Cp4.1LG01g09170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g09170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Tetratricopeptide-like helical
Location	Cp4.1LG01: 4334222 .. 4334587 (-)
RNA-Seq Expression	Cp4.1LG01g09170
Synteny	Cp4.1LG01g09170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAAGGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGATGAAGACTACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGCGGTGTGTCCTTCTCTCCGACGATCATGTGGCATTTGAGAAAAATCACAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGACCAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAA

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAAGGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGATGAAGACTACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGCGGTGTGTCCTTCTCTCCGACGATCATGTGGCATTTGAGAAAAATCACAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGACCAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAAGGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGATGAAGACTACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGCGGTGTGTCCTTCTCTCCGACGATCATGTGGCATTTGAGAAAAATCACAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGACCAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKIIASKRSKS

Homology

[Close]

BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 227 bits (578), Expect = 1.41e-74
Identity = 116/121 (95.87%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSC 60
           MSVSLEALAMAGIDSNEWAMDAEEWER EME DIPPHLLADED EEDEMSTKFPATRCSC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  CRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKIIASKRSK 120
           CRKDDGVGGVS SPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLM MTIKIIASKRSK
Sbjct: 61  CRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: KAG6600647.1 (hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (556), Expect = 3.20e-71
Identity = 113/121 (93.39%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSC 60
           MSVSLEALAMAGIDSNE AMDAEEWER EME +IPPHLLADED EEDEMSTKFPATRCSC
Sbjct: 1   MSVSLEALAMAGIDSNERAMDAEEWERNEMEKNIPPHLLADEDNEEDEMSTKFPATRCSC 60

Query: 61  CRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKIIASKRSK 120
           CRKD+GVGGVS SPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLM MTIKIIASKRSK
Sbjct: 61  CRKDEGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107 bits (266), Expect = 5.98e-27
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMST-----KFPA 60
           MSVSLEALAMAGI SNEWAMDAEEWER E+END+PPHLLADED ++D +++      FP 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPV 60

Query: 61  TRC--SCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKI 119
                S  R+D G   +     I+  L K  EKR  N +SS+ I+   ++GFL++  +KI
Sbjct: 61  AGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILKI 120

[Close]

BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (265), Expect = 8.48e-27
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMST-----KFPA 60
           MSVSLEALAMAGI SNEWAMDAEEWER E+END+PPHLLADED ++D +++      FP 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPV 60

Query: 61  TRC--SCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKI 119
                S  R+D G   +     I+  L K  EKR  N +SS+ I+   ++GFL++  +KI
Sbjct: 61  AGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILKI 120

[Close]

BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 7.46e-25
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSC 60
           MSVSLEALAMAGIDSNEW MDA+EWER E++  +PPHLLADE  E+DE      +T  + 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADE--EDDEDGEYVTSTISNY 60

Query: 61  CRKDDG-----------VGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLM 120
           C + DG             G      I + L K+ EKR  N ++S+ I+   ++GFLM+M
Sbjct: 61  CFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVM 120

[Close]

BLAST of Cp4.1LG01g09170 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 227 bits (578), Expect = 6.83e-75
Identity = 116/121 (95.87%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSC 60
           MSVSLEALAMAGIDSNEWAMDAEEWER EME DIPPHLLADED EEDEMSTKFPATRCSC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  CRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKIIASKRSK 120
           CRKDDGVGGVS SPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLM MTIKIIASKRSK
Sbjct: 61  CRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of Cp4.1LG01g09170 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 2.49e-26
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEED------------- 60
           MSVSLEALAMAGIDSNEWAMDAEEWER E++  +PPHLLADE+ +ED             
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  --EMSTKFPATRCSCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGF 120
              +   F   R   C+ D G G       I   L K+ EKR  N +SS+ I+   ++GF
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILG--IFCSLSKVIEKRASNGMSSVRIIVRTILGF 120

[Close]

BLAST of Cp4.1LG01g09170 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 3.61e-25
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSC 60
           MSVSLEALAMAGIDSNEW MDA+EWER E++  +PPHLLADE  E+DE      +T  + 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADE--EDDEDGEYVTSTISNY 60

Query: 61  CRKDDG-----------VGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLM 120
           C + DG             G      I + L K+ EKR  N ++S+ I+   ++GFLM+M
Sbjct: 61  CFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVM 120

[Close]

BLAST of Cp4.1LG01g09170 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.62e-21
Identity = 57/121 (47.11%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSC 60
           MSVSLEALAMAGIDSNEW MDA+EWER E++  +PPHLLADE  E+DE      +T  + 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADE--EDDEDGEYVTSTISNY 60

Query: 61  CRKDDG-----------VGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLM 110
           C + DG             G      I + L K+ EKR  N ++S+ I+   ++GFLM+M
Sbjct: 61  CFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVM 118

[Close]

BLAST of Cp4.1LG01g09170 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.34e-15
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERK--EMEND--IPPHLLADEDYEEDEMSTKFPAT 60
          M VSLEALAMAGIDSNEWAMDAEEW+    +MEND  IPPHLLADED  E+ ++ K    
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADED--EENIAAK--EL 60

Query: 61 RCSCCRKDDGVGGVSFSPTIMWHLRKITEKR 87
            S  RKDDG+            LRK+ EKR
Sbjct: 61 CISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87

[Close]

BLAST of Cp4.1LG01g09170 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDE 49
          +EALAMAG+D  EW +  EEWE +  E+ +P HLLAD+  EE++
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQ--ESVVPLHLLADDFKEEEQ 42

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09170 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g09170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943015.1	1.41e-74	95.87	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KAG6600647.1	3.20e-71	93.39	hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015383.1	5.98e-27	50.00	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	8.48e-27	50.00	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK16880.1	7.46e-25	48.09	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG01g09170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX98	6.83e-75	95.87	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KWE7	2.49e-26	48.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	3.61e-25	48.09	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	3.62e-21	47.11	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KU90	3.34e-15	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g09170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	2.2e-05	52.27	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09170.1	Cp4.1LG01g09170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane