Cp4.1LG01g09010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g09010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S4
Location	Cp4.1LG01: 4442438 .. 4445720 (-)
RNA-Seq Expression	Cp4.1LG01g09010
Synteny	Cp4.1LG01g09010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGCACGGGCATTTTGGTAAATTGCGTAAAAACCCTAAGCCCTTCTCTTATTTAAAGTGAAACCGACGTAACCCCAATTCTCTTCCCCAAGGAGTTTCAGAGGCGGCAGCAAACTCACTCGGCCTTCTACAAAGGCGACCTTCCTTGTTTCGAAACCATGGTAAGGAGATGTTTCTATGAACCTTCTTCCTCCTAATTTGCATTTGATATTTGTTAATCCGGGTTGATAAACTTCAATGCAGTTTTCTCTCTGTTCTCGTTTGGTTTTTTTTTTTCCGATCATTGTTGAATTGTAGCCTGTTGTATCAGTATTAGGTATGCTGTTATAAGTTCGTCTTGAATCTGCCTTTCTTATCTCGAGATCTGAAAATGCGCTTCTTATTTTGTTTTGGAGATCATTTATTGGGCACTGACATATGAGATTCATGGTTGGGTGGTTTATGTACATTTCGGCGTCCTGTGTTTGTGGTTGGTCTATCTGGTTGAGTTGAATCCGTGTAAGTTATATATTGTTTGTATGTTTCTGGTGCCTGCATATATTCTTAGGGCATTCATGTTTTTGTAAGCGATACCTTTTGTAAACTTTGAACTGCAAAATAAGAACAACAAAGTACGTTTAGTTATTCAGTAATGCACTAGCTGTACATCCCAACTAGTTTGCATGTTCGTTTAGTTCTACATTCCAACTAGTTTACACCTCAACTAATTTTGTAATGTTGTTAACATGAATTTAAAGATTTTATGGCTCGAGATTTTATGCAAGATGTTTATCAGAGTTACTATGTTCCTTGCTCTTTGTTTTGGCTTCATGCTATCTGTATCTATGTGTCCTTTCTTCTGTCTAGCATTTTGGTGTTAGGACTTGGGAATATATAATATTACCTTTGGAATTAATGGCTATTTCTACCACAGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGTGAGTCAAAATTATAGTTCAAGTTCAGTTTACATCTTGCTATTGTTCAACATGTTACCTATTTTTGACATTTATCGGATCTTTTTGTAGGCCCCCAAACCTTCCTCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATTCTTATCCTACGAAACCGATTGAAGTATGCTCTCACTTATCGTGAGGTGATTTCAATCTTAATGCAAAGACATGTTCTTGTTGATGGGAAAGTGAGAACTGATAAGACATACCCAGCTGGGTTTATGGGTATTCTGCTTACCTTTTATCTTCTTAATTTAATTCTAATCTTAATAATTGAATGAAAGTGCCATTCTTCGTTGCATAATTTTAGGCATCACTTGTCTTGACAAACTTAAACAAGTCATTATCGATCTGTCGATGAATGAGACTAGGATGATGTATTATTAACGGAGATCATGTTTGAAGTGAATGGGGCAAGTGGCCATGAACTGCGGTCTGGTTCAGGAATGCTTCCATTTCCTAGCTTGACCACATTTTGTAATATTTTAGCCTTATTGTTAGTTTCATCTCGTGAATTACTATAAATTGTTACATTTTTTATGGAATTGATTCTTTAAAATATTGAATAGTTGGTACTGCCTTTATTAAATTTTATTATTTGATTAGATTAGCCCCCATTATTATAAATAAACATACCAAACTGTTTTTACTATAGATATTAGAATGTGGATGTGAATAACATTATGTCTAGATAACATACGATGTGCATTCTAATTTTGTGTTGCCAATTCTGAAGAAGATAGTCAGTAATATATTGATCTGATTATACGATCTTATGGTGTGATTGTCACCTAGACAAAGTGTTTTTTTTTCTTGGTGTGTAATGTTTGTTTTATATGATTATTATTCTGTCCATGCTAAAGTTGAATTTTCTTTTTTTCCTTGTGATGCCTTCTTGGTAGATGTTGTATCAATTCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAGGCAAAGGTTAGTTACCTATATATTTGATATCAAACTTTATCTTCTATTTTTTTGTTTGTTAAACATGACTTCTCGGGATCAGAAAACAAGTAAATCACATCATGTGTAGCTGTCACAAATCTGTGAATAAGCTTTAGAACTTCTCCGCTTCGATTGTCATTTCCTGTCAAAAAAAAAAGAAGCATTCCGTCTTTTCCTGCTTACCTGTTCTAGGTAGTTGCATTTTTCTTTTAACTCCTGGGGTTTTAGGAAGGAAAATGGATTTCCTCTTCAACGACTTACAGACATTATTGTCATTGGTCTATGAAAATATTGGATTGTTCACATTGATTTTCATGTTTCTTTATGCAGTACAAACTCTGCAAAGTCCGTTCTGTGCAGTTCGGGCAGAAGGGCATTCCATATCTTAACACATATGATGGTCGTACCATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACCATCAAGCTCGACCTTGAGACCAACAAGATCGCTGATTTCATCAAGTTTGATGTGGGTAATGTTGTGATGGTTACTGGTGGAAGAAATCGTGGAAGAGTTGGAGTAATTAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGCCACGAATTTGCCACTCGTCTTTGCAATGTCTTTACCGTCGGTAAGGGTACTAAGCCATGGCTATCCCTACCTAAGGGCAAGGGTATTAAGTTATCCATCATCGAAGAGGCTAGGAAGAGGCTTGCAAGCCAGGCGGCAGTTACAGCTTAGGAGTCTTTAATGAAAAGGTTGGAAGAAGACATTGTTTATGGTTATTGATTTTAGATTGTTCTGACGAGTCTGTTCTTTGAATTTGTGTTTCAAATTTTGTTTTAGTAAGTTTTTCCCAACCGCTGTTTCGTTATTTTCATTTTAATTTTAGCGTGGCTGCTACAATTAGTCATTCTAAAAGTTTCATGTTAATGTTTGCAATCTAAATGAGAGTTTAAAAATTAAGTCAATTGTCAAAATGTCAATGTAGGAACATTTGTCATGTTCTATTTTGTTACGTGTATTTAAATGATAGGAAGTTTTCTTGGTTGTTCGAAGTTATTTATGCGTCGAGTTTTCTGTTTAAACTAATGAGTATGAAATTTGGTTTTGTTACCATAAGATGGGACAATGGTATAAAAATCTTTCGTTTAGGAACATTAACGTGTATCATCTCACATTTGATTATTGATGTGTTGTAATTAAG

mRNA sequence

CACGCACGGGCATTTTGGTAAATTGCGTAAAAACCCTAAGCCCTTCTCTTATTTAAAGTGAAACCGACGTAACCCCAATTCTCTTCCCCAAGGAGTTTCAGAGGCGGCAGCAAACTCACTCGGCCTTCTACAAAGGCGACCTTCCTTGTTTCGAAACCATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCCTCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATTCTTATCCTACGAAACCGATTGAAGTATGCTCTCACTTATCGTGAGGTGATTTCAATCTTAATGCAAAGACATGTTCTTGTTGATGGGAAAGTGAGAACTGATAAGACATACCCAGCTGGGTTTATGGATGTTGTATCAATTCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAGGCAAAGTACAAACTCTGCAAAGTCCGTTCTGTGCAGTTCGGGCAGAAGGGCATTCCATATCTTAACACATATGATGGTCGTACCATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACCATCAAGCTCGACCTTGAGACCAACAAGATCGCTGATTTCATCAAGTTTGATGTGGGTAATGTTGTGATGGTTACTGGTGGAAGAAATCGTGGAAGAGTTGGAGTAATTAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGCCACGAATTTGCCACTCGTCTTTGCAATGTCTTTACCGTCGGTAAGGGTACTAAGCCATGGCTATCCCTACCTAAGGGCAAGGGTATTAAGTTATCCATCATCGAAGAGGCTAGGAAGAGGCTTGCAAGCCAGGCGGCAGTTACAGCTTAGGAGTCTTTAATGAAAAGGTTGGAAGAAGACATTGTTTATGGTTATTGATTTTAGATTGTTCTGACGAGTCTGTTCTTTGAATTTGTGTTTCAAATTTTGTTTTAGTAAGTTTTTCCCAACCGCTGTTTCGTTATTTTCATTTTAATTTTAGCGTGGCTGCTACAATTAGTCATTCTAAAAGTTTCATGTTAATGTTTGCAATCTAAATGAGAGTTTAAAAATTAAGTCAATTGTCAAAATGTCAATGTAGGAACATTTGTCATGTTCTATTTTGTTACGTGTATTTAAATGATAGGAAGTTTTCTTGGTTGTTCGAAGTTATTTATGCGTCGAGTTTTCTGTTTAAACTAATGAGTATGAAATTTGGTTTTGTTACCATAAGATGGGACAATGGTATAAAAATCTTTCGTTTAGGAACATTAACGTGTATCATCTCACATTTGATTATTGATGTGTTGTAATTAAG

Coding sequence (CDS)

ATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCCTCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATTCTTATCCTACGAAACCGATTGAAGTATGCTCTCACTTATCGTGAGGTGATTTCAATCTTAATGCAAAGACATGTTCTTGTTGATGGGAAAGTGAGAACTGATAAGACATACCCAGCTGGGTTTATGGATGTTGTATCAATTCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAGGCAAAGTACAAACTCTGCAAAGTCCGTTCTGTGCAGTTCGGGCAGAAGGGCATTCCATATCTTAACACATATGATGGTCGTACCATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACCATCAAGCTCGACCTTGAGACCAACAAGATCGCTGATTTCATCAAGTTTGATGTGGGTAATGTTGTGATGGTTACTGGTGGAAGAAATCGTGGAAGAGTTGGAGTAATTAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGCCACGAATTTGCCACTCGTCTTTGCAATGTCTTTACCGTCGGTAAGGGTACTAAGCCATGGCTATCCCTACCTAAGGGCAAGGGTATTAAGTTATCCATCATCGAAGAGGCTAGGAAGAGGCTTGCAAGCCAGGCGGCAGTTACAGCTTAG

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPKGKGIKLSIIEEARKRLASQAAVTA

Homology

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BLAST of Cp4.1LG01g09010 vs. ExPASy Swiss-Prot
Match: Q8VYK6 (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 504.6 bits (1298), Expect = 6.8e-142
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy Swiss-Prot
Match: P49204 (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 504.2 bits (1297), Expect = 8.9e-142
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy Swiss-Prot
Match: P46300 (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.6e-141
Identity = 241/264 (91.29%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+H+QD+ GHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy Swiss-Prot
Match: Q93VH9 (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.4e-141
Identity = 239/261 (91.57%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy Swiss-Prot
Match: O22424 (40S ribosomal protein S4 OS=Zea mays OX=4577 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 3.2e-139
Identity = 240/265 (90.57%), Postives = 254/265 (95.85%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +RDE+AK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK+DLETNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRN GRVGVIKNREKHKGSFETIHV+D+ GH+FATR+ NVFT+GKG KPW+SLPK
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKR-LASQAAVTA 265
           GKGIKLSIIEE RKR  A+QAA  A
Sbjct: 241 GKGIKLSIIEEQRKRDAAAQAAANA 265

[Close]

BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: XP_023551057.1 (40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 530 bits (1366), Expect = 5.21e-190
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: XP_022942860.1 (40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_022987478.1 40S ribosomal protein S4-3-like [Cucurbita maxima] >KAG7031302.1 40S ribosomal protein S4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 530 bits (1365), Expect = 7.40e-190
Identity = 263/264 (99.62%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPWLSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWLSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: XP_022976936.1 (40S ribosomal protein S4-3-like [Cucurbita maxima] >KAG6592224.1 40S ribosomal protein S4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 523 bits (1348), Expect = 2.89e-187
Identity = 259/264 (98.11%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: XP_022932544.1 (40S ribosomal protein S4-3-like [Cucurbita moschata])

HSP 1 Score: 522 bits (1345), Expect = 8.29e-187
Identity = 258/264 (97.73%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQA+VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQASVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: XP_022132117.1 (40S ribosomal protein S4-3 [Momordica charantia])

HSP 1 Score: 520 bits (1339), Expect = 6.81e-186
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy TrEMBL
Match: A0A6J1JJJ9 (40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111485015 PE=3 SV=1)

HSP 1 Score: 530 bits (1365), Expect = 3.58e-190
Identity = 263/264 (99.62%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPWLSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWLSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy TrEMBL
Match: A0A6J1FX18 (40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111447763 PE=3 SV=1)

HSP 1 Score: 530 bits (1365), Expect = 3.58e-190
Identity = 263/264 (99.62%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPWLSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWLSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy TrEMBL
Match: A0A6J1II98 (40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111477157 PE=3 SV=1)

HSP 1 Score: 523 bits (1348), Expect = 1.40e-187
Identity = 259/264 (98.11%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy TrEMBL
Match: A0A6J1EXA2 (40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111439038 PE=3 SV=1)

HSP 1 Score: 522 bits (1345), Expect = 4.01e-187
Identity = 258/264 (97.73%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQA+VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQASVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. ExPASy TrEMBL
Match: A0A6J1BSY6 (40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=1)

HSP 1 Score: 520 bits (1339), Expect = 3.30e-186
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL++NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 264
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g09010 vs. TAIR 10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 504.6 bits (1298), Expect = 4.8e-143
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g09010 vs. TAIR 10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 504.2 bits (1297), Expect = 6.3e-143
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Cp4.1LG01g09010 vs. TAIR 10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 501.9 bits (1291), Expect = 3.1e-142
Identity = 239/261 (91.57%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Cp4.1LG01g09010 vs. TAIR 10
Match: AT5G07090.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 465.7 bits (1197), Expect = 2.5e-131
Identity = 223/243 (91.77%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 19  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRT 78
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVISILMQRH+ VDGKVRT
Sbjct: 1   MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 60

Query: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 138
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK+KLCKVRS+QFGQKGIPY
Sbjct: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 120

Query: 139 LNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
           LNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 121 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 180

Query: 199 EKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPKGKGIKLSIIEEARKRLAS 258
           EKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPKGKGIKL+IIEEARKRLAS
Sbjct: 181 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 240

Query: 259 QAA 262
           Q A
Sbjct: 241 QQA 243

[Close]

BLAST of Cp4.1LG01g09010 vs. TAIR 10
Match: AT2G17360.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 352.8 bits (904), Expect = 2.3e-97
Identity = 167/181 (92.27%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVG  
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGKC 180

Query: 181 V 182
           V
Sbjct: 181 V 181

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYK6	6.8e-142	92.34	40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2	[more]
P49204	8.9e-142	92.34	40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4	[more]
P46300	2.6e-141	91.29	40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1	[more]
Q93VH9	4.4e-141	91.57	40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1	[more]
O22424	3.2e-139	90.57	40S ribosomal protein S4 OS=Zea mays OX=4577 GN=RPS4 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g09010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551057.1	5.21e-190	100.00	40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942860.1	7.40e-190	99.62	40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_022987478.1 40S ribosom...	[more]
XP_022976936.1	2.89e-187	98.11	40S ribosomal protein S4-3-like [Cucurbita maxima] >KAG6592224.1 40S ribosomal p...	[more]
XP_022932544.1	8.29e-187	97.73	40S ribosomal protein S4-3-like [Cucurbita moschata]	[more]
XP_022132117.1	6.81e-186	97.35	40S ribosomal protein S4-3 [Momordica charantia]	[more]

BLAST of Cp4.1LG01g09010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJJ9	3.58e-190	99.62	40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111485015 PE=3 SV=1	[more]
A0A6J1FX18	3.58e-190	99.62	40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111447763 PE=3 SV=1	[more]
A0A6J1II98	1.40e-187	98.11	40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111477157 PE=3 SV=1	[more]
A0A6J1EXA2	4.01e-187	97.73	40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111439038 PE=3 SV=1	[more]
A0A6J1BSY6	3.30e-186	97.35	40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=...	[more]

BLAST of Cp4.1LG01g09010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58420.1	4.8e-143	92.34	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	6.3e-143	92.34	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	3.1e-142	91.57	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.2	2.5e-131	91.77	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.2	2.3e-97	92.27	Ribosomal protein S4 (RPS4A) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 42..106 e-value: 9.3E-5 score: 31.8
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 47..90 e-value: 5.2E-7 score: 29.3
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 51..112 e-value: 5.35425E-6 score: 41.4662
IPR005824	KOW	SMART	SM00739	kow_9	coord: 174..201 e-value: 7.7E-4 score: 28.8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 177..210 e-value: 2.3E-6 score: 27.3
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 95..169 e-value: 5.4E-36 score: 122.3
IPR032277	40S ribosomal protein S4, C-terminal domain	PFAM	PF16121	40S_S4_C	coord: 212..258 e-value: 8.8E-24 score: 82.9
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 175..245 e-value: 1.9E-38 score: 132.2
IPR000876	Ribosomal protein S4e	PIRSF	PIRSF002116	RPS4a_RPS4e	coord: 1..241 e-value: 6.1E-98 score: 324.8
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 2..221
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 221..264
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 7..238 score: 36.349121
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 1..117 e-value: 1.2E-61 score: 207.9
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 3..39 e-value: 4.1E-19 score: 68.4
IPR038237	Ribosomal protein S4e, central domain superfamily	GENE3D	2.40.50.740		coord: 122..172 e-value: 7.0E-32 score: 111.0
None	No IPR available	PANTHER	PTHR11581:SF33	40S RIBOSOMAL PROTEIN S4	coord: 221..264
None	No IPR available	PANTHER	PTHR11581:SF33	40S RIBOSOMAL PROTEIN S4	coord: 2..221
None	No IPR available	PROSITE	PS50889	S4	coord: 42..104 score: 9.052361
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 8..22
IPR041982	Ribosomal protein S4, KOW domain	CDD	cd06087	KOW_RPS4	coord: 175..229 e-value: 4.56376E-30 score: 105.29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09010.1	Cp4.1LG01g09010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding