Cp4.1LG01g08810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g08810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionVery-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
LocationCp4.1LG01: 4651520 .. 4653108 (+)
RNA-Seq ExpressionCp4.1LG01g08810
SyntenyCp4.1LG01g08810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGATGGGCTTCTGATTTTTAGGAATTATGTACATTGTTAACTCAGTTTTTATTGTTAAGTTTGCCGACCATTGTATATTCTGTGAGATGATAATTTATTAGATCATCACTTCCTCATTCAAATTAGTAGATCTAGACTGAGTTTGACATGATTCGTAGAATTGTGAAAATTTGGTTACTTAATTCTTGCATGTTTAGGAGTGACTTTGAAATGGTCAAAAATCACTTCTTAGTGATTTTGCCATTCCAAACTTACTCTCAAACATGCTTGAGGAGTTTTGAAATGGTTAGGATTACTTTCATCATGTTCGAACCTACTCCAGAACATGCTTTAATCATTCATTCCAAATCAACTTAATGTTTGATTTTACAATTTTCATACCGTACAAATTGATTTTGAGTAATTAAAAACATGTTTCAGAGTTATTTTAAATGCGGCAAAAGTGATTTTATCTACCTCAAAGTGTTCTTTTTGAAGTAGTTATAGAAAGAGTTAGATACTTAGAAATTCATTACAAACCAGTCCTAAGTTATGGAAAAAAGTTCCAAAATCTATCTATCAAGGCATACAGTTTTCAAAATGTACCATGGAGACGTATAAACAATTACTGACTTTATGTTGATATGCAATCTCTTGTGGATAAGTTCTATGTCTGGTTTCTTCGTCTTACCAATCTTTGATTGCAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTACTGGCTCCTTATGTAGTGGAGTGGAGTACAATTGGTCGGTGTTCTCTGCATCTGTGATATTAAAACTGTTCTCAATCATATCATGTAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGTAAGAAATCCAATGTCATGTTGTACACATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGCGTCGAAGTATACGTCGTTCCATTAGGAAGTTTGTCGTCATTTCAAATTGCAGTGAATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTATGTTTTTGTATTTGCTCCTTTTGGTAATACAGAAACTGTGTCCTGCAGGAAGTCCACACATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATACATTTGTCTACCGAAACTCTTAATCAACTCTTAATCTAACTCCAATTAAGCTAATATGATTGATTTAATTATAATATTTAGATTAGTTAGATAA

mRNA sequence

TGTGATGGGCTTCTGATTTTTAGGAATTATGTACATTGTTAACTCAGTTTTTATTGTTAAGTTTGCCGACCATTGTATATTCTGTGAGATGATAATTTATTAGATCATCACTTCCTCATTCAAATTAGTAGATCTAGACTGAGTTTGACATGATTCGTAGAATTGTGAAAATTTGGTTACTTAATTCTTGCATGTTTAGGAGTGACTTTGAAATGGTCAAAAATCACTTCTTAGTGATTTTGCCATTCCAAACTTACTCTCAAACATGCTTGAGGAGTTTTGAAATGGTTAGGATTACTTTCATCATGTTCGAACCTACTCCAGAACATGCTTTAATCATTCATTCCAAATCAACTTAATGTTTGATTTTACAATTTTCATACCGTACAAATTGATTTTGAGTAATTAAAAACATGTTTCAGAGTTATTTTAAATGCGGCAAAAGTGATTTTATCTACCTCAAAGTGTTCTTTTTGAAGTAGTTATAGAAAGAGTTAGATACTTAGAAATTCATTACAAACCAGTCCTAAGTTATGGAAAAAAGTTCCAAAATCTATCTATCAAGGCATACAGTTTTCAAAATGTACCATGGAGACGTATAAACAATTACTGACTTTATGTTGATATGCAATCTCTTGTGGATAAGTTCTATGTCTGGTTTCTTCGTCTTACCAATCTTTGATTGCAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACACATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATACATTTGTCTACCGAAACTCTTAATCAACTCTTAATCTAACTCCAATTAAGCTAATATGATTGATTTAATTATAATATTTAGATTAGTTAGATAA

Coding sequence (CDS)

ATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACACATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG

Protein sequence

MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Homology
[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy Swiss-Prot
Match: Q7XSZ4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-37
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPS LLWLRYSTF++LY TGI+SEVGL+Y+ALPYMK S KY  RMPNKWNFSF
Sbjct: 124 MKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 97
           D+ Y ++L LAIYVPGSPHM+ YML QR KAL+K+K
Sbjct: 184 DFFYASILSLAIYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy Swiss-Prot
Match: Q5ZEJ0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.1e-36
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKE FGFAPS LLWLRYSTF++LY TGI+SEVGL+Y+ALPYMK + KY  RMPNKWNFSF
Sbjct: 124 MKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 97
           D+ Y ++L LA+YVPGSPHM+ YML QR KAL+K+K
Sbjct: 184 DFSYASILSLAVYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy Swiss-Prot
Match: Q8VZB2 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-34
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEA GFAPS  LWLRYS+FLLLY TGITSEVGL+YLALP++K S  YS RMPN  NFSFD
Sbjct: 125 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 184

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           + Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 185 FFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy Swiss-Prot
Match: Q9QY80 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN=Hacd1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.4e-17
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 0 

Query: 9   PSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFDYLYGAML 68
           P  + W RY+ F++LY  G+  E+  +Y ALPY+K+SG +S R+PNK+N SFDY Y  ++
Sbjct: 188 PHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRLPNKYNVSFDYYYFLLI 247

Query: 69  ILAIYVPGSPHMYRYMLVQRSKAL 93
            +A Y+P  P +Y +ML QR K L
Sbjct: 248 TMASYIPLFPQLYFHMLRQRRKVL 271

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy Swiss-Prot
Match: Q4W1W1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris OX=9615 GN=HACD1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-16
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 0 

Query: 9   PSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFDYLYGAML 68
           P  + W RY+ F++LY  G+  E+  +Y ALPY+K++G +S R+PNK+N SFDY Y  ++
Sbjct: 156 PYFIKWARYNFFIILYPVGVVGELLTIYAALPYVKKTGMFSIRLPNKYNVSFDYYYFLLI 215

Query: 69  ILAIYVPGSPHMYRYMLVQRSKAL 93
            +A Y+P  P +Y +ML QR K L
Sbjct: 216 TMASYIPLFPQLYFHMLRQRRKVL 239

[Close]
BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: XP_023548387.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197 bits (500), Expect = 2.06e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
          MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 1  MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60

Query: 61 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
          DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 61 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98

[Close]
BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 197 bits (500), Expect = 1.07e-61
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 184 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: XP_022942204.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 197 bits (500), Expect = 1.07e-61
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 184 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: XP_022942201.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata] >XP_022942202.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 197 bits (500), Expect = 1.93e-61
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 143 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 202

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 203 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 240

[Close]
BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: XP_022942934.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 197 bits (500), Expect = 1.93e-61
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 143 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 202

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 203 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 240

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy TrEMBL
Match: A0A6J1FQM5 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 5.18e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 184 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy TrEMBL
Match: A0A6J1FX62 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 5.18e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 184 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy TrEMBL
Match: A0A6J1FPK4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 9.34e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 143 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 202

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 203 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 240

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy TrEMBL
Match: A0A6J1FST0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 9.34e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF
Sbjct: 143 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 202

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 203 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 240

[Close]
BLAST of Cp4.1LG01g08810 vs. ExPASy TrEMBL
Match: A0A6J1IKY7 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 GN=LOC111474885 PE=3 SV=1)

HSP 1 Score: 195 bits (496), Expect = 2.10e-61
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALP+MKESGKYSFRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPFMKESGKYSFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 98
           DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Sbjct: 184 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. TAIR 10
Match: AT5G10480.1 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 147.1 bits (370), Expect = 7.3e-36
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEA GFAPS  LWLRYS+FLLLY TGITSEVGL+YLALP++K S  YS RMPN  NFSFD
Sbjct: 125 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 184

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           + Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 185 FFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]
BLAST of Cp4.1LG01g08810 vs. TAIR 10
Match: AT5G10480.2 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 147.1 bits (370), Expect = 7.3e-36
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEA GFAPS  LWLRYS+FLLLY TGITSEVGL+YLALP++K S  YS RMPN  NFSFD
Sbjct: 100 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 159

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           + Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 160 FFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 196

[Close]
BLAST of Cp4.1LG01g08810 vs. TAIR 10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 147.1 bits (370), Expect = 7.3e-36
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEA GFAPS  LWLRYS+FLLLY TGITSEVGL+YLALP++K S  YS RMPN  NFSFD
Sbjct: 134 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 193

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           + Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 194 FFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 230

[Close]
BLAST of Cp4.1LG01g08810 vs. TAIR 10
Match: AT5G59770.1 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0 

Query: 6   GFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWN-FSFDYLY 65
           G  P  L +LRY+ F+++Y TG+  E+ ++Y ALPY+KE   Y+    N ++ F F Y  
Sbjct: 176 GRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKERNLYA----NFFSVFPFSYYD 235

Query: 66  GAMLILAIYVPGSPHMYRYMLVQRSKALSKSKK 98
               +L +Y      +Y  +  QR   L KSKK
Sbjct: 236 FLWAVLLVYPFLWLKLYLQLFKQRKSKLGKSKK 264

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g08810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XSZ42.9e-3776.04Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa... [more]
Q5ZEJ04.1e-3672.92Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa... [more]
Q8VZB21.0e-3475.26Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t... [more]
Q9QY807.4e-1746.43Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN... [more]
Q4W1W12.1e-1645.24Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris O... [more]
BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023548387.12.06e-63100.00very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucurbita pepo... [more]
XP_022942935.11.07e-61100.00very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2... [more]
XP_022942204.11.07e-61100.00very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2... [more]
XP_022942201.11.93e-61100.00very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1... [more]
XP_022942934.11.93e-61100.00very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1... [more]
BLAST of Cp4.1LG01g08810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FQM55.18e-62100.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662... [more]
A0A6J1FX625.18e-62100.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662... [more]
A0A6J1FPK49.34e-62100.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662... [more]
A0A6J1FST09.34e-62100.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662... [more]
A0A6J1IKY72.10e-6198.98Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 G... [more]
BLAST of Cp4.1LG01g08810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G10480.17.3e-3675.26Protein-tyrosine phosphatase-like, PTPLA [more]
AT5G10480.27.3e-3675.26Protein-tyrosine phosphatase-like, PTPLA [more]
AT5G10480.37.3e-3675.26Protein-tyrosine phosphatase-like, PTPLA [more]
AT5G59770.12.1e-0635.48Protein-tyrosine phosphatase-like, PTPLA [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 6..93
e-value: 1.7E-26
score: 92.8
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 2..98
NoneNo IPR availablePANTHERPTHR11035:SF39VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASEcoord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08810.1Cp4.1LG01g08810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030497 fatty acid elongation
biological_process GO:0030148 sphingolipid biosynthetic process
biological_process GO:0042761 very long-chain fatty acid biosynthetic process
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
molecular_function GO:0018812 3-hydroxyacyl-CoA dehydratase activity
molecular_function GO:0102343 3-hydroxy-arachidoyl-CoA dehydratase activity
molecular_function GO:0102344 3-hydroxy-behenoyl-CoA dehydratase activity
molecular_function GO:0102345 3-hydroxy-lignoceroyl-CoA dehydratase activity
molecular_function GO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity