Cp4.1LG01g08450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g08450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMetallothionein-like protein type 3
LocationCp4.1LG01: 4894334 .. 4895649 (-)
RNA-Seq ExpressionCp4.1LG01g08450
SyntenyCp4.1LG01g08450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAGAAGAAAAATAGAAAAGAAAAGTGAAATTGACATTAGAGAAGGATAGAAAGGCAACCTATATGATTCGGATTCTTTTGGACAGTTCAGAAGAGGCGTGTGCTTCTCCCATACTTGGCATTCATCTCGGCCACTCCTTGCCAATGCCAACGCCATGGCCCTGCACTATAAATACACAGCCATACTCAAGACTTAGAGATCATAAGCCAAAAAAAGTTCCATAAGCTATCAGTTTTTCGTTCTCCTACAACTTCTCTAGCTTCTTCACCATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGTAAGTATTTTTTTTTTTTTTGGTTTCCTACGAACTTTGCAGCAAATCTCATCAAGAGCTTGCTTGTTTCAAAGCTATGATTCTGTTTCCCTCTAGAAATTATCTTAATATAGCAAGTCTGTCAATATGGTCCTTGGTTGCCCTCCCAATTATGACAGTTTGTTTGATGCTATAAAGGGAAGCAGAAGGGGCAATAAACTCTATTGGGGTGAAACTAAAAGTTCGAATCCAAATTATAGTGTCGCTGCAAATAAGATAATCATAAAACCACTTTTTCTTTCTTTTCCTTCACAGTACGACCAAATCAAAACTAAAAAATTACTAGTAAAAAAAAGGATTGAAAAGTTTGCATATTCGAATTCATTTCTATGTTAATGACGTGCTCTATAATGACAGGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGGTAATTTTTTCAGCTCATCGGGCATATACCTTCTTCAAAACAGATGATTTAGAGCCCATTTTTTTCATGAAAAACTCAAATTCAAAGGGTGTAAACAAAAGTATGTTTAGAGTTAGAAAATAAAGAGTGGAGCAGAGACAAAAGAAATCTCAACAAGTTATTAACTAAAAGTGCTTGATAGTACCTGGCATCTAACAATGAATCTCTTGGTTCTGCAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGAACACATACACCTGTTGTTTCCATTAACACAGTTATATAAAGCCAGGAATAATGTAGCTGTGTTTGAAAAGTGTCCTATTATGTTCAAAACCTCTGTGCTTAGCTAGAGGTGTGTTACGAATAATATCTACTTCTGTTCTTCATCCATAGTCATGTAATGCTGGTCACTTCTGTGGCCATGGGTTAACTATTAATGGATAAGTTATATGCTAGTATACTCTCCCTCTCCTTCCA

mRNA sequence

TACAGAAGAAAAATAGAAAAGAAAAGTGAAATTGACATTAGAGAAGGATAGAAAGGCAACCTATATGATTCGGATTCTTTTGGACAGTTCAGAAGAGGCGTGTGCTTCTCCCATACTTGGCATTCATCTCGGCCACTCCTTGCCAATGCCAACGCCATGGCCCTGCACTATAAATACACAGCCATACTCAAGACTTAGAGATCATAAGCCAAAAAAAGTTCCATAAGCTATCAGTTTTTCGTTCTCCTACAACTTCTCTAGCTTCTTCACCATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGAACACATACACCTGTTGTTTCCATTAACACAGTTATATAAAGCCAGGAATAATGTAGCTGTGTTTGAAAAGTGTCCTATTATGTTCAAAACCTCTGTGCTTAGCTAGAGGTGTGTTACGAATAATATCTACTTCTGTTCTTCATCCATAGTCATGTAATGCTGGTCACTTCTGTGGCCATGGGTTAACTATTAATGGATAAGTTATATGCTAGTATACTCTCCCTCTCCTTCCA

Coding sequence (CDS)

ATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGA

Protein sequence

MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHCGK
Homology
[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy Swiss-Prot
Match: O24059 (Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.2e-16
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MSGKC NCDC+DS+ CVKKGNSY  VI+E E    D + +D PAAEH+ KC C   CSC 
Sbjct: 1  MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCV 60

Query: 61 DCHCG 65
           C CG
Sbjct: 61 SCTCG 65

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy Swiss-Prot
Match: A2WLS0 (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCGNCDC+D S CVKKG SYG VI+E EKS+F+    +V A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE----EVAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCGK 66
          DC CGK
Sbjct: 61 DCKCGK 62

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy Swiss-Prot
Match: A1YTM8 (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica OX=39947 GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCGNCDC+D S CVKKG SYG VI+E EKS+F+    +V A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE----EVAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCGK 66
          DC CGK
Sbjct: 61 DCKCGK 62

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy Swiss-Prot
Match: Q40256 (Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCN-PCSCKDCHC 64
          CGNCDC D S CVKKGNSYG  I+E EKSY D + +   AAEH+ KC C   C+C DC C
Sbjct: 4  CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTDCKC 63

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy Swiss-Prot
Match: O48951 (Metallothionein-like protein 1 OS=Prunus avium OX=42229 GN=MT1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KC NCDCSDSS C KKG S+  VI+E E    D + MD PAAE+   C C P C+C 
Sbjct: 1  MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIMDAPAAENGGNCKCGPSCACV 60

Query: 61 DCHC 64
          DC C
Sbjct: 61 DCKC 64

[Close]
BLAST of Cp4.1LG01g08450 vs. NCBI nr
Match: KAG7031367.1 (Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (360), Expect = 4.53e-43
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD 60
          MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD
Sbjct: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKD 60

Query: 61 CHCGK 65
          CHCGK
Sbjct: 61 CHCGK 65

[Close]
BLAST of Cp4.1LG01g08450 vs. NCBI nr
Match: ADN33916.1 (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 105 bits (263), Expect = 2.83e-28
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 63
          CGNCDCSD + CVKKGNSYGAVIMENE S FDAI M+ PAAEHNDKCSCNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

[Close]
BLAST of Cp4.1LG01g08450 vs. NCBI nr
Match: ACZ69388.1 (metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical protein Csa_011531 [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 1.64e-27
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 63
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

[Close]
BLAST of Cp4.1LG01g08450 vs. NCBI nr
Match: PON68011.1 (Metallothionein-like protein type [Parasponia andersonii])

HSP 1 Score: 91.3 bits (225), Expect = 1.88e-22
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KCG+CDC+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 64
          +C CG
Sbjct: 61 NCTCG 65

[Close]
BLAST of Cp4.1LG01g08450 vs. NCBI nr
Match: PON91165.1 (Metallothionein-like protein type [Trema orientale])

HSP 1 Score: 89.4 bits (220), Expect = 1.09e-21
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KCG+C+C+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCNCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 64
          +C CG
Sbjct: 61 NCTCG 65

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy TrEMBL
Match: E5GBS4 (Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.37e-28
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 63
          CGNCDCSD + CVKKGNSYGAVIMENE S FDAI M+ PAAEHNDKCSCNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy TrEMBL
Match: D2J0B0 (Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 103 bits (258), Expect = 7.95e-28
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 63
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy TrEMBL
Match: A0A2P5D400 (Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098150 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.09e-23
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KCG+CDC+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 64
          +C CG
Sbjct: 61 NCTCG 65

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy TrEMBL
Match: A0A2P5F066 (Metallothionein-like protein type OS=Trema orientale OX=63057 GN=TorRG33x02_129810 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.26e-22
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KCG+C+C+D S CVKKG+SY  VI+E EKSY DA+ MD PAAEHN KC C   CSC 
Sbjct: 1  MSDKCGSCNCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCV 60

Query: 61 DCHCG 64
          +C CG
Sbjct: 61 NCTCG 65

[Close]
BLAST of Cp4.1LG01g08450 vs. ExPASy TrEMBL
Match: A0A2N9F6R2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10356 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.06e-21
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS KCGNCDC+D S CVKKG+SYG VI+E +KSY + + MD PAAEH  KC C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGSSYGLVIVETDKSYTNTVVMDAPAAEHEGKCKCGASCSCT 60

Query: 61 DCHCGK 65
          +C CG+
Sbjct: 61 NCTCGQ 66

[Close]
BLAST of Cp4.1LG01g08450 vs. TAIR 10
Match: AT3G15353.1 (metallothionein 3 )

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC---NPCS 60
          MS  CG+CDC+D + CVKKG SY   I+E ++SY +A+ MDV A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHC 64
          C +C C
Sbjct: 61 CVNCTC 66

[Close]
BLAST of Cp4.1LG01g08450 vs. TAIR 10
Match: AT3G15353.2 (metallothionein 3 )

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-09
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC---NPCS 60
          MS  CG+CDC+D +   KKG SY   I+E ++SY +A+ MDV A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKTQ--KKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHC 64
          C +C C
Sbjct: 61 CVNCTC 64

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g08450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O240599.2e-1660.00Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1[more]
A2WLS01.3e-1460.61Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A P... [more]
A1YTM81.3e-1460.61Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica OX=39947 GN=MT3A... [more]
Q402561.3e-1460.66Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1[more]
O489511.1e-1356.25Metallothionein-like protein 1 OS=Prunus avium OX=42229 GN=MT1 PE=3 SV=1[more]
BLAST of Cp4.1LG01g08450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031367.14.53e-43100.00Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma][more]
ADN33916.12.83e-2881.36metallothionein-like protein [Cucumis melo subsp. melo][more]
ACZ69388.11.64e-2779.66metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical p... [more]
PON68011.11.88e-2266.15Metallothionein-like protein type [Parasponia andersonii][more]
PON91165.11.09e-2164.62Metallothionein-like protein type [Trema orientale][more]
BLAST of Cp4.1LG01g08450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GBS41.37e-2881.36Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
D2J0B07.95e-2879.66Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=... [more]
A0A2P5D4009.09e-2366.15Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
A0A2P5F0665.26e-2264.62Metallothionein-like protein type OS=Trema orientale OX=63057 GN=TorRG33x02_1298... [more]
A0A2N9F6R21.06e-2162.12Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10356 PE=4 SV=1[more]
BLAST of Cp4.1LG01g08450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15353.13.7e-1250.00metallothionein 3 [more]
AT3G15353.23.8e-0946.97metallothionein 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08450.1Cp4.1LG01g08450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046914 transition metal ion binding