Cp4.1LG01g08270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g08270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG01: 4941837 .. 4945199 (-)
RNA-Seq Expression	Cp4.1LG01g08270
Synteny	Cp4.1LG01g08270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGATACATAAAAATCTAAAGAAGGAATATGATTGGCTAACAAAACTGTGTGTTTACCCCACAAAATTTCTGGGTCTTCCATTCTTCGCCACTCATCTTCCCCATCTTCTCATAATATTCCCCCACTCCATTTCTCTCTTCTTCTCGCACCTTTCCCACAACTCTAACACACACCTCAACTACGATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCTCCCCTTTTCTCGGCCAAAACAGAGCCTCTTCCAGTAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGTCCCGACCCCTTTCGTTTTCTCTCTCCCTACCTTTGCTTCCTTTTTGTCTTAGGGAGTATTGAAATNTTTTTTTTTTTTTTTTTTTTTTTCAATTTTGAATAGGGAAATCAACTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCCGCTCAGACTCCCTCCTACTTGAACGGAGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATTTCCATCCCCATCCTTGCTTAAGAATTAATTAAGGTATTAATTTGATGAATTCAAATTTTGATTTACATATGGTCGAACGGAATTGCAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGTGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTCGGCGAAGGCAACGACCTATACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTCCAGGCCATCGTGACTGGGAAAGGCCCCCTCGAGAACCTTCTGGACCATCTGGATAACCCTGTGGCCAACAATGCCTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTGAGGCGATGTGTGGTGGGTTTGGTCGATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGAGTAATGGATTTATGGAATGATTATTCTTAATCTTAATTACATCATTTAATTTAGATCTAATCTATTATCACACTACCCTGCTTTGTTCTAATCTATTATATGTCAAAAATATGATATTACTTCGGCTCATCTCAATATTATATAAACCAATAATTAAGAATAAAAGTCAAAGCACTAACAGACAAAAATGTTAACACAATTTAAATCCTCTCTTCTTGATGTCACTCCATCCAACAGACAAAAATTACAAAAAATGGTATTTAATTATGAAAGGTTTCAAATTTTTGGACTCCAAATCGAATTTAATTATGAAAGGGTAAAATGGTATTTTCAGGTCCCAGGTCAAAATTCAACAAGTACAAACATATTCTTCTTTTAGTTTCTTGCTTCCCTTTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACTGAAAATTCTGTTCACGAGCTCCCTCAAGGTACACTTGAGTTATGTGAAAAGGAATTAAACTAAACAGTATCAGATAGACTTGAGAATTGTATCCTCCAGAGTTTTTTACTTGTCGTTTCTTGCCCATTGCCTCTCTTTAAGATGTTTTAGATCTCTTCTGTGTTTTCGTATTTGTTTTCTTTGAGTATTTTTTAAGTTTAACTAATTTATTTCTCCCTTGAATTTAAAGCGATGGACGTGTCCGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTGTAAGCTTCTACCTGGAAATTATGCTTAATTTTTTAACCACAATTCATCATGCGCTTTTGCTTTTGTTTCTGGTTTCAATTCAAGTGTTCCCAGCTCCTGATTTTAGATACATTGCCTTTGTTGAATTGCTGTGCACAGAGATGAGTTAGATTTGGATTTCATTATTTCACATGACTAAGCCATTATCCCAAATTCGTTCATTTTGAGATGAGGTCGAGAAAATTAGGATGCATCTTTTAATGCCATCAAACAAGAAGCTGTCTTGGGTTTGGTTGTCTCTGACCGACCGTATTTCAATTTGCATTTTGATTGCTAAGATCACATTGTTTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACTAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGCAAAAGCCATATCCAAGAGCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGATACAGCCCTTAAATTATAAAATTGATTTATTTCTGTTCCCTTCATAGAATTTTATGTTATTTACTTCCACCCACAAAGTGTGTCAACCCTGCAAATTCCAAAGTCCTAAGTCACTGGAGAAAGATCCACAGGAGTCCAAAGGCTCATCTAATGGCGTCAACACCTTGACACCCCAACCAGACCCATCCAAGCTTTTAGTTCTCTATCAAAGATGACTCTTTCCATTGCTGCTGTCCCCACTCCACACGTTCTTCCAAAAACTAATCCTCTGTCTATCTCCAGCTTTGGTAAATCTATGAATACCTTCCATGCTTATTGAAGATTTGGATTTACCATTGGACTTGAGGGATTTCAAGGTCTTCTCTCTGCCCTCTACTGTTACACAAATGTGAAAGATGTTGAATATTTACTCTTTTGCATCAAAGATGTGTTCCCCTTTAGCACAAAGAGCTTCAATATTATCCTCCATGGATGGCTATGGATCTCATAGAAACGTCGCTGTGTCCTGTTATGTAGTGCCACAACCTTTTAATTTTAAAACTGCTTTCGCCTGTTATGTATTGGTGTTATGTATGGTTTTCCACACCTTAAAGAAATGTTTCGACGTTCCTCTCCAATCGATATAGAATTTTACAATCCATTCTCTTGAGGGTTAGCGTCCTCGTTGGCACGTTGCTCTTGGGGGCTAGCGTCCTTGTTAGTACATTGTTCGGTGTCTAACTTTGATATCATTTGTAACAATTTCAGCCTAT

mRNA sequence

TGAGATACATAAAAATCTAAAGAAGGAATATGATTGGCTAACAAAACTGTGTGTTTACCCCACAAAATTTCTGGGTCTTCCATTCTTCGCCACTCATCTTCCCCATCTTCTCATAATATTCCCCCACTCCATTTCTCTCTTCTTCTCGCACCTTTCCCACAACTCTAACACACACCTCAACTACGATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCTCCCCTTTTCTCGGCCAAAACAGAGCCTCTTCCAGTAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGGAAATCAACTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCCGCTCAGACTCCCTCCTACTTGAACGGAGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGTGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTCGGCGAAGGCAACGACCTATACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTCCAGGCCATCGTGACTGGGAAAGGCCCCCTCGAGAACCTTCTGGACCATCTGGATAACCCTGTGGCCAACAATGCCTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTGAGGCGATGTGTGGTGGGTTTGGTCGATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGAGTAATGGATTTATGGAATGATTATTCTTAATCTTAATTACATCATTTAATTTAGATCTAATCTATTATCACACTACCCTGCTTTGTTCTAATCTATTATATGTCAAAAATATGATATTACTTCGGCTCATCTCAATATTATATAAACCAATAATTAAGAATAAAAGTCAAAGCACTAACAGACAAAAATGTTAACACAATTTAAATCCTCTCTTCTTGATGTCACTCCATCCAACAGACAAAAATTACAAAAAATGGTATTTAATTATGAAAGGTTTCAAATTTTTGGACTCCAAATCGAATTTAATTATGAAAGGGTAAAATGGTATTTTCAGGTCCCAGGTCAAAATTCAACAAGTACAAACATATTCTTCTTTTAGTTTCTTGCTTCCCTTTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACTGAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGTCCGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTAAAGTTGAAGAAGGGGGGAAGACTAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGCAAAAGCCATATCCAAGAGCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGATACAGCCCTTAAATTATAAAATTGATTTATTTCTGTTCCCTTCATAGAATTTTATGTTATTTACTTCCACCCACAAAGTGTGTCAACCCTGCAAATTCCAAAGTCCTAAGTCACTGGAGAAAGATCCACAGGAGTCCAAAGGCTCATCTAATGGCGTCAACACCTTGACACCCCAACCAGACCCATCCAAGCTTTTAGTTCTCTATCAAAGATGACTCTTTCCATTGCTGCTGTCCCCACTCCACACGTTCTTCCAAAAACTAATCCTCTGTCTATCTCCAGCTTTGGTAAATCTATGAATACCTTCCATGCTTATTGAAGATTTGGATTTACCATTGGACTTGAGGGATTTCAAGGTCTTCTCTCTGCCCTCTACTGTTACACAAATGTGAAAGATGTTGAATATTTACTCTTTTGCATCAAAGATGTGTTCCCCTTTAGCACAAAGAGCTTCAATATTATCCTCCATGGATGGCTATGGATCTCATAGAAACGTCGCTGTGTCCTGTTATGTAGTGCCACAACCTTTTAATTTTAAAACTGCTTTCGCCTGTTATGTATTGGTGTTATGTATGGTTTTCCACACCTTAAAGAAATGTTTCGACGTTCCTCTCCAATCGATATAGAATTTTACAATCCATTCTCTTGAGGGTTAGCGTCCTCGTTGGCACGTTGCTCTTGGGGGCTAGCGTCCTTGTTAGTACATTGTTCGGTGTCTAACTTTGATATCATTTGTAACAATTTCAGCCTAT

Coding sequence (CDS)

ATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCTCCCCTTTTCTCGGCCAAAACAGAGCCTCTTCCAGTAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGGAAATCAACTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCCGCTCAGACTCCCTCCTACTTGAACGGAGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGTGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTCGGCGAAGGCAACGACCTATACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTCCAGGCCATCGTGACTGGGAAAGGCCCCCTCGAGAACCTTCTGGACCATCTGGATAACCCTGTGGCCAACAATGCCTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAA

Protein sequence

MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS

Homology

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy Swiss-Prot
Match: Q9S7M0 (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 1.8e-142
Identity = 235/263 (89.35%), Postives = 251/263 (95.44%), Query Frame = 0


Query: 2   SMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSAQ 61
           S   +S+++L P+ FLGQ +ASS N LRDVV++G+PKYTMGN LWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 121
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KW++V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFAPGS 265
           LDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy Swiss-Prot
Match: P27489 (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB13 PE=1 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 5.4e-139
Identity = 232/264 (87.88%), Postives = 248/264 (93.94%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           M+  A+ST +++ +PFLGQ +  ++N LRDVVAMG+ ++TM N LWYGPDRVKYLGPFSA
Sbjct: 4   MAATASSTTVVKATPFLGQTK--NANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSA 63

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCI PEVLEKW+K
Sbjct: 64  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVK 123

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GV
Sbjct: 124 VDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 183

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 184 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PG+
Sbjct: 244 LLDHLDNPVANNAWVYATKFVPGA 265

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy Swiss-Prot
Match: P27523 (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHBC PE=2 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 9.5e-136
Identity = 228/263 (86.69%), Postives = 245/263 (93.16%), Query Frame = 0


Query: 3   MAATSTAILRPSPFL-GQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSAQ 62
           MAA S A++  +PFL GQ RA+S++ LRD+ A    + TMGN LWYGPDRVKYLGPFSAQ
Sbjct: 6   MAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQ 65

Query: 63  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 122
           TPSYLNGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GC+ PEVL+KW+ V
Sbjct: 66  TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGV 125

Query: 123 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 182
           +FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 126 EFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG 185

Query: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245

Query: 243 LDHLDNPVANNAWVYATKFAPGS 265
            DHLD+PVANNAWV+ATKFAPGS
Sbjct: 246 FDHLDDPVANNAWVFATKFAPGS 268

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy Swiss-Prot
Match: P27518 (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum OX=3635 GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 363.2 bits (931), Expect = 2.4e-99
Identity = 184/266 (69.17%), Postives = 204/266 (76.69%), Query Frame = 0


Query: 7   STAILRPSPFLGQNRASSSNSL-RDVVAMGTPKYTM-------GNQLWYGPDRVKYLGPF 66
           +T+ ++ S F GQ     SN L   + A+G  + +M          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S Q PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L K 
Sbjct: 62  SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DHL +PVANNAW YAT F PG
Sbjct: 242 IENLFDHLADPVANNAWAYATNFVPG 264

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy Swiss-Prot
Match: P14278 (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB4 PE=2 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.4e-99
Identity = 184/266 (69.17%), Postives = 204/266 (76.69%), Query Frame = 0


Query: 7   STAILRPSPFLGQNRASSSNS-LRDVVAMGTPKYTM-------GNQLWYGPDRVKYLGPF 66
           +T  ++ S F+GQ    S N  +R V   G  + TM          +WYG DR KYLGPF
Sbjct: 2   ATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K 
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DH+++PVANNAW YAT F PG
Sbjct: 242 IENLSDHINDPVANNAWAYATNFVPG 264

[Close]

BLAST of Cp4.1LG01g08270 vs. NCBI nr
Match: XP_023538245.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547 bits (1409), Expect = 1.45e-196
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. NCBI nr
Match: KAG6600741.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 543 bits (1400), Expect = 3.41e-195
Identity = 261/264 (98.86%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           MSMAATSTAILRP+PFLGQNRASS+NSLRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQNRASSNNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. NCBI nr
Match: XP_022943011.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 541 bits (1395), Expect = 1.97e-194
Identity = 260/264 (98.48%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           MSMAATSTAILRP+PFLGQNRA S+NSLRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. NCBI nr
Match: XP_022993918.1 (chlorophyll a-b binding protein 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 541 bits (1393), Expect = 3.98e-194
Identity = 260/264 (98.48%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           MSMAATSTAILRP+PFLGQ+RASS NSLRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. NCBI nr
Match: XP_022929511.1 (chlorophyll a-b binding protein 13, chloroplastic [Cucurbita moschata])

HSP 1 Score: 525 bits (1351), Expect = 1.01e-187
Identity = 251/264 (95.08%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           M+  ATST +LR +PFLGQ R+S  N LRDVVAMGTPKYTMGN LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy TrEMBL
Match: A0A6J1FQJ2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447875 PE=3 SV=1)

HSP 1 Score: 541 bits (1395), Expect = 9.55e-195
Identity = 260/264 (98.48%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           MSMAATSTAILRP+PFLGQNRA S+NSLRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy TrEMBL
Match: A0A6J1K3P2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489770 PE=3 SV=1)

HSP 1 Score: 541 bits (1393), Expect = 1.93e-194
Identity = 260/264 (98.48%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           MSMAATSTAILRP+PFLGQ+RASS NSLRDVVAMGTPKYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy TrEMBL
Match: A0A6J1ENC1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436057 PE=3 SV=1)

HSP 1 Score: 525 bits (1351), Expect = 4.88e-188
Identity = 251/264 (95.08%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           M+  ATST +LR +PFLGQ R+S  N LRDVVAMGTPKYTMGN LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy TrEMBL
Match: A0A6J1J4D4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483299 PE=3 SV=1)

HSP 1 Score: 523 bits (1348), Expect = 1.40e-187
Identity = 250/264 (94.70%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           M+  AT+T +LR +PFLGQ R+S  N LRDVVAMGTPKYTMGN LWYGPDRVKYLGPFSA
Sbjct: 1   MAATATATGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. ExPASy TrEMBL
Match: W9RGN8 (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis OX=981085 GN=L484_018739 PE=3 SV=1)

HSP 1 Score: 518 bits (1333), Expect = 2.71e-185
Identity = 247/264 (93.56%), Postives = 254/264 (96.21%), Query Frame = 0


Query: 1   MSMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSA 60
           M+  A+S+A+LRP+PFLGQNR  SS SLRDVV MGT KYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW+K
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 264
           LLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of Cp4.1LG01g08270 vs. TAIR 10
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3 )

HSP 1 Score: 506.5 bits (1303), Expect = 1.3e-143
Identity = 235/263 (89.35%), Postives = 251/263 (95.44%), Query Frame = 0


Query: 2   SMAATSTAILRPSPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVKYLGPFSAQ 61
           S   +S+++L P+ FLGQ +ASS N LRDVV++G+PKYTMGN LWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 121
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KW++V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFAPGS 265
           LDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of Cp4.1LG01g08270 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-99
Identity = 182/267 (68.16%), Postives = 202/267 (75.66%), Query Frame = 0


Query: 7   STAILRPSPFLGQNRASSSNS-LRDVVAMGTPKYTM-------GNQLWYGPDRVKYLGPF 66
           +T+ ++ S F GQ     SN  LR V   G  + TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPGS 265
           +ENL DHL +PVANNAW YAT F PG+
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPGN 265

[Close]

BLAST of Cp4.1LG01g08270 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 357.8 bits (917), Expect = 7.3e-99
Identity = 180/266 (67.67%), Postives = 203/266 (76.32%), Query Frame = 0


Query: 7   STAILRPSPFLGQNRAS-SSNSLRDVVAMGTPKYTM-------GNQLWYGPDRVKYLGPF 66
           +T+ ++ S F GQ     SS+ ++ V  +G  + TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DHL +PVANNAW YAT F PG
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPG 264

[Close]

BLAST of Cp4.1LG01g08270 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 354.8 bits (909), Expect = 6.2e-98
Identity = 179/268 (66.79%), Postives = 200/268 (74.63%), Query Frame = 0


Query: 7   STAILRPSPFLGQNRASSSNSL----------RDVVAMGTPKYTMGNQLWYGPDRVKYLG 66
           +T+ ++ S F GQ     SN L            ++   T K T    +WYGPDR KYLG
Sbjct: 2   ATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKST-PQSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPG 264
           GP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 GPIENLFDHIADPVANNAWAYATNFVPG 265

[Close]

BLAST of Cp4.1LG01g08270 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 348.6 bits (893), Expect = 4.4e-96
Identity = 178/271 (65.68%), Postives = 203/271 (74.91%), Query Frame = 0


Query: 3   MAATSTAILRP---------SPFLGQNRASSSNSLRDVVAMGTPKYTMGNQLWYGPDRVK 62
           MAA++ A+  P         SP   +   S   ++R  VA   PK   G+  WYG DRVK
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVA--KPKGPSGSP-WYGSDRVK 60

Query: 63  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPE 122
           YLGPFS ++PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE
Sbjct: 61  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 123 VLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 182
           +L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 121 LLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 180

Query: 183 INGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 242
           + G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 181 VAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240

Query: 243 TGKGPLENLLDHLDNPVANNAWVYATKFAPG 264
           TGKGP+ENL DHL +PV NNAW +AT F PG
Sbjct: 241 TGKGPIENLADHLADPVNNNAWAFATNFVPG 266

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7M0	1.8e-142	89.35	Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P27489	5.4e-139	87.88	Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
P27523	9.5e-136	86.69	Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg...	[more]
P27518	2.4e-99	69.17	Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum OX=3635...	[more]
P14278	2.4e-99	69.17	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]

BLAST of Cp4.1LG01g08270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538245.1	1.45e-196	100.00	chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
KAG6600741.1	3.41e-195	98.86	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022943011.1	1.97e-194	98.48	chlorophyll a-b binding protein 3, chloroplastic-like [Cucurbita moschata]	[more]
XP_022993918.1	3.98e-194	98.48	chlorophyll a-b binding protein 3, chloroplastic [Cucurbita maxima]	[more]
XP_022929511.1	1.01e-187	95.08	chlorophyll a-b binding protein 13, chloroplastic [Cucurbita moschata]	[more]

BLAST of Cp4.1LG01g08270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQJ2	9.55e-195	98.48	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1K3P2	1.93e-194	98.48	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1ENC1	4.88e-188	95.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J4D4	1.40e-187	94.70	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
W9RGN8	2.71e-185	93.56	Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis OX=981085 GN=L...	[more]

BLAST of Cp4.1LG01g08270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54270.1	1.3e-143	89.35	light-harvesting chlorophyll B-binding protein 3	[more]
AT2G05100.1	1.5e-99	68.16	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	7.3e-99	67.67	photosystem II light harvesting complex gene 2.2	[more]
AT3G27690.1	6.2e-98	66.79	photosystem II light harvesting complex gene 2.3	[more]
AT1G29910.1	4.4e-96	65.68	chlorophyll A/B binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..230 e-value: 2.8E-49 score: 167.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 53..257 e-value: 2.2E-91 score: 307.1
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 3..264
None	No IPR available	PANTHER	PTHR21649:SF129	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 3..264
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 45..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08270.1	Cp4.1LG01g08270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009635	response to herbicide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009517	PSII associated light-harvesting complex II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019904	protein domain specific binding