Cp4.1LG01g08140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g08140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Location	Cp4.1LG01: 5120449 .. 5124357 (-)
RNA-Seq Expression	Cp4.1LG01g08140
Synteny	Cp4.1LG01g08140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATTCTTCGTTGGCTTATTGGGAGAACGAGAAGGAAGTCGAGGGATTTTTCGAAGCTTCAATTGAGACAGAACGCGATCGGAAGGCAAGTCTGCGTTCATTTTCTCTACAAACTTCTGACGGAGAGCATAATCTTTGTCGACGTAGAAGAGGATAAATTATGGGCGTTCTGTAATGTCCGTGCAAACGGTGCTAGGAGGAAAGATAATGTCGAAGCTTTTGAAGAAAATTGCCGGCTTCTTCACCGACAGAACTCTGATGGGAGTTGACAAAGCGGGAAACAGATACTTCTTTGTAAAAGAAGAAATTGATGGCATAAGTAAGTAGCTCTAAATCCCCTTAAATTGCTCATTCTCATTGTTCCATAACTGCTTTTGATCGGAATGAGGATCTTGTTCTGTAATTTGTCTTACATTTGCCGTTGTGAGATTCCGACTGAGTTTTTGCTTCTTTTTGTTTCTTTATGGATTTCCAGTTGCATTCACCAATTTTAAGAACTGTCGGAAGTCTGAAATTACACAAAAGTTAACAGCTAATCTTAATCCATGGAAAGCCAATAATTTCCCCCCGAAAACTGTTGAACTCTTTCTTCTGCTAGTGGTTTCATCTCTGTGTGCCTTTGCAATTGAATTATAAAATTTTAATCATTGGGGCCTTTCCCTTTATCTTAGTCGACATTAAATGAATGTTATTCCTGAGATATAAAGAGCAAGAGCACTCATGATTTAGCTTGATTGGTAATTAGCTGCCTTTCTTATACAGTGAAACTTTTATTACTGTACGTATACAGCTCACACAACTTTTACTCATTGGTTTGCTAGTGAAAGAGAAGAGATGGGTGGTTTTTAAGGGTGAGGATGATCCAACTTCAATTCCAGGTATGCATTTATGTACCTATAGTTAAAATTTAAGAGAAGGCCTTTGTTATTCAAATCATCTGATTATGTCGTGTTTAAATTAGGGTTTGAAATATTGGGTAAATTATAAATTTTATCCCTATAGTTAGGAGAAAGTTAGAATTTAGTCTGGATGATTTTTAAAGTTTGAATTTCTTCTTTATGATATGGTAAAACCTCATAAATAGTTTTTATGATTTGATATTACCCTCATAAATGCTTCCTCCTTCGAAGTTGGATATGTAGTTTAGGAGGAACTCGACATGCTGGTGGTAGGTTTTTGTGATGATGATTGCTTATATTTGCTGCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACTCCCGAGGTAACTTCTTCCATGACCAACCGGATCTCTTTGCATCCCCCTTGATTGGCCTGAAGAATGGTGATTGGTGTGCTACTCTTGATTTAATATTTAAATGGTTCTTTTGTCATTGTCTTCAGGAAATGATGGAGTTAGAAGCTAGGCGTGAACATGTACGACAAAATGTTGCCTGTATGTTGACTCTTCATGCCTCTTATTCCTTTGTTGTTCATGATGGAATATTTTACAATATGCATTTAGAACTTTCAACTTCTCTCTATGCAAATTGTAACTCATATACATACAGGCAGAAAGGGATGAACTGCATTGTGCCTAAAATGGTCAAATATAAGAATCTCCAAACATATTCATATCTGAGAACTGCTTTTTGTACGAACTGATCGTGAACTTTATAATCTTACTTAAAGACCTAAGAAGCATGGATATGGATGCAAGCCTCAAATACAACATGACATACCATTTAAAAAAAATCTAGGACACGGACATGAAAAAACACGTTTATTAGAATATGAAATTTTATAATACATCAGTTTTATACTAGAAAGAAATTCAAAATCAATAAGATTATGCGTTTATATGCTTGAAAAATGAGTTTGATGTTTTTTACTCTCAAAATTTATTATTTTTGTACTATATTATTATGTGTCTATTTAGTATACTTTACGTGTGTTTGATACATGTTTAACAAATGTTGGATCTATATTGGTTTTGTACGACAACTAGTGACAGACTCATGTATTGTACTTAGCAAGTATCCAATATGTGTCCAACAAGTGTCGAAGTGTCTGACACATGTTAGATATGGTACATGGACACGCTAGCTAAATAAATTGTCTCTGCTTCTTAGCTTAAGACATTCGTTCAAAATTATTTTTTTCTGCCTTATATCTTCTTACAAGATGGTTTATGCTTCCAGTTGGAATTCATCTAGCTCAACTTTTTTTCTGTTAATGAATTCATATTTCTTTTTATGAGATACAGAACCGGATCAGCATTTGATTAGCAATTGAAGTTCAAATTTTAATTTTGTTTGATTCTTTTTGAAGAGCCAATACCATTCTCATTCTTTGACTTAACAAGGTCTTTTTGGAAATTTGTATGTCTAATTTAGTACTCAAGAAAGAAGAGATGGAAAGAAAATCTAAAGAAAGCAATCTACGGAAAGTCGTTAGCACTGGTGAGTTGCTTATTTACTAACTCACGTGCTTGTTACTTGGAGCATATTACTAACATTCTTTTGCTGCATGGGTCAAGTTGCAGGTCCTAACTTGAAAAGCTTTATTCGACAATTTCCAACTGGTTCAGAAGGTATCATATGATCTAATAATGTATTTTCTTACCCCTTTATTTCCTCTTGGTCCTCCCCCCAAGATAAAAGAAATGTATTTGCTTCAATACTTAGAATAGGATTTTCTTAATGGCTATATTGAGATAGAAAGAAGCCGAGGTTCCCATTTGTATCACTTGCAAAAGCATTTGGTTTAAAATAATAATTTAGAATGATCTTAATTTTCTTCATTTGGTTGATTACTTTCTTGTATTTCTTCTGGTCACATATACCTCGCTCTCTCCCAAACTGATAGTCCTTCATTTCCTTTCGATCAGAGTTTATTTTATTGATTCGATACATATAATTGTTCATTCATTTTGGTTTTTCTTGAACAAAGGTGCTCAAGACAACGAAGGATCGGCTGCAAAGGATAGCCTGAGGTAGGTCATTCATTTTGAATGTCATAACTATTTAACTTATAATTTTTGACTCAATGCTATGGTCTTCCATGAAAAATTTTGAATGTACTTTTCCATGTTGTTCGCCTTTGCCATGTGACTTGTATTGAGTGTTATTATTCTTTCTGAGTTTTCTAGGTAATCAATATTGTGATCCTTTAGCATTTATTCTGTTAAAAACATCTAAAGTTTTCTTTTGCAATGTATTTAATTTATAATCAATGTGCTTAAATTTAGAGAACTGTTCCTTACTTGTAATATGGATTTACCTTTGCTTCAACTACCAGGAACTCAAAAGAAAATGAGGCAGCTAAAGAGCAACCAATTCCAGAGTAAGTGGATTTTTCTTTCTTTCTGATCTCACTCAACTTATTAGTCATAACTATCAACATTAGAGCCATAGGATTTATGTACTAGCTGAATTATGTATCAAAAAGTTGCCGTTCTTTCATTTTCAGGTCCTCCGAGCCCATGGGATCTGGTCAAACATTCAGACCAGGAACGTGGCAGCCTCCAACATGAGTGCTGGTGCTCTTCAACTTCAAGAGAAGAACTCTCCAACCCTTGAACTAGCAGTACAAGACTTCTGTATCAGCAATTTTGTATGCTTCCGTTTACTCAACATTCAACTTTTTCCGAGGGACGCCCTTGTATTTGACTCTTACACATCCTGCCCTCCATTGTTCTAAACACAAGGTTGTGCGTCGCCTTGGTTTCAAATGCTCATATAGTATTTGGTGAAAGCAAGGATAACTATAGTTTTTTAAATGAATATCCCTAAAGAATACGTGTCACTATGGGATAAATATCTCAATATTGATTTAACCCATTTGAATCTCATTTAAATTTTAAATATGTTTTTATTTTAATATTTAAGTTATCAAATACAATATATATTCCTTTCTTTGAATATTTCAAA

mRNA sequence

CTTTATTCTTCGTTGGCTTATTGGGAGAACGAGAAGGAAGTCGAGGGATTTTTCGAAGCTTCAATTGAGACAGAACGCGATCGGAAGGCAAGTCTGCGTTCATTTTCTCTACAAACTTCTGACGGAGAGCATAATCTTTGTCGACGTAGAAGAGGATAAATTATGGGCGTTCTGTAATGTCCGTGCAAACGGTGCTAGGAGGAAAGATAATGTCGAAGCTTTTGAAGAAAATTGCCGGCTTCTTCACCGACAGAACTCTGATGGGAGTTGACAAAGCGGGAAACAGATACTTCTTTGTAAAAGAAGAAATTGATGGCATAATGAAAGAGAAGAGATGGGTGGTTTTTAAGGGTGAGGATGATCCAACTTCAATTCCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACTCCCGAGGAAATGATGGAGTTAGAAGCTAGGCGTGAACATGTACGACAAAATGTTGCCTTACTCAAGAAAGAAGAGATGGAAAGAAAATCTAAAGAAAGCAATCTACGGAAAGTCGTTAGCACTGGTCCTAACTTGAAAAGCTTTATTCGACAATTTCCAACTGGTTCAGAAGGTGCTCAAGACAACGAAGGATCGGCTGCAAAGGATAGCCTGAGGAACTCAAAAGAAAATGAGGCAGCTAAAGAGCAACCAATTCCAGAGTCCTCCGAGCCCATGGGATCTGGTCAAACATTCAGACCAGGAACGTGGCAGCCTCCAACATGAGTGCTGGTGCTCTTCAACTTCAAGAGAAGAACTCTCCAACCCTTGAACTAGCAGTACAAGACTTCTGTATCAGCAATTTTGTATGCTTCCGTTTACTCAACATTCAACTTTTTCCGAGGGACGCCCTTGTATTTGACTCTTACACATCCTGCCCTCCATTGTTCTAAACACAAGGTTGTGCGTCGCCTTGGTTTCAAATGCTCATATAGTATTTGGTGAAAGCAAGGATAACTATAGTTTTTTAAATGAATATCCCTAAAGAATACGTGTCACTATGGGATAAATATCTCAATATTGATTTAACCCATTTGAATCTCATTTAAATTTTAAATATGTTTTTATTTTAATATTTAAGTTATCAAATACAATATATATTCCTTTCTTTGAATATTTCAAA

Coding sequence (CDS)

ATGTCCGTGCAAACGGTGCTAGGAGGAAAGATAATGTCGAAGCTTTTGAAGAAAATTGCCGGCTTCTTCACCGACAGAACTCTGATGGGAGTTGACAAAGCGGGAAACAGATACTTCTTTGTAAAAGAAGAAATTGATGGCATAATGAAAGAGAAGAGATGGGTGGTTTTTAAGGGTGAGGATGATCCAACTTCAATTCCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACTCCCGAGGAAATGATGGAGTTAGAAGCTAGGCGTGAACATGTACGACAAAATGTTGCCTTACTCAAGAAAGAAGAGATGGAAAGAAAATCTAAAGAAAGCAATCTACGGAAAGTCGTTAGCACTGGTCCTAACTTGAAAAGCTTTATTCGACAATTTCCAACTGGTTCAGAAGGTGCTCAAGACAACGAAGGATCGGCTGCAAAGGATAGCCTGAGGAACTCAAAAGAAAATGAGGCAGCTAAAGAGCAACCAATTCCAGAGTCCTCCGAGCCCATGGGATCTGGTCAAACATTCAGACCAGGAACGTGGCAGCCTCCAACATGA

Protein sequence

MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQPPT

Homology

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy Swiss-Prot
Match: Q59J78 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 OS=Mus musculus OX=10090 GN=Ndufaf2 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.6e-04
Identity = 46/170 (27.06%), Postives = 73/170 (42.94%), Query Frame = 0


Query: 26  RTLMGVDKAGNRYFFVKEEID---GIMKEKRWVVFKG----EDDPTSIPVEWICWLNGQR 85
           R  +G D  GN+Y++V E  +     ++EKR V        + +   IP EW  W+   R
Sbjct: 20  REHVGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTR 79

Query: 86  KKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVSTGPNLKSFIRQFPTG 145
           K  PT EE+++ E  RE ++     +K ++   K K          G      +   PT 
Sbjct: 80  KTPPTMEEILKNEKYREEIK-----IKSQDFYEKDK---------LGKETSEELLPSPT- 139

Query: 146 SEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQP 189
              A   +G A+             +E+P   S  P  +G+TF+PG+W P
Sbjct: 140 ---ATQVKGHASAPYF--------GREEP---SVAPTSTGKTFQPGSWTP 160

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy Swiss-Prot
Match: Q8N183 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 OS=Homo sapiens OX=9606 GN=NDUFAF2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.2e-04
Identity = 44/168 (26.19%), Postives = 75/168 (44.64%), Query Frame = 0


Query: 29  MGVDKAGNRYFFV---KEEIDGIMKEKRWVVFKGED----DPTSIPVEWICWLNGQRKKA 88
           +G D+ GN+Y+++   K      ++EKR V    +     +   IP EW  W+   RK  
Sbjct: 23  VGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTRKTP 82

Query: 89  PTPEEMMELEARREHVR-QNVALLKKEEMERKSKESNLRKVVSTGPNLKSFIRQFPTGSE 148
           PT EE+++ E  RE ++ ++    +KE++  K     L       P +++ I+       
Sbjct: 83  PTMEEILKNEKHREEIKIKSQDFYEKEKLLSKETSEEL-----LPPPVQTQIK------- 142

Query: 149 GAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQP 189
                 G A+             KE+P   S  P  +G+TF+PG+W P
Sbjct: 143 ------GHASAPYF--------GKEEP---SVAPSSTGKTFQPGSWMP 161

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: XP_023545847.1 (uncharacterized protein LOC111805151 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374 bits (959), Expect = 2.00e-130
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT 180
           VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT
Sbjct: 121 VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT 180

Query: 181 FRPGTWQPPT 190
           FRPGTWQPPT
Sbjct: 181 FRPGTWQPPT 190

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: XP_022942432.1 (uncharacterized protein LOC111447475 isoform X2 [Cucurbita moschata])

HSP 1 Score: 370 bits (951), Expect = 3.32e-129
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT 180
           VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT
Sbjct: 121 VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT 180

Query: 181 FRPGTWQPPT 190
           FRPGTWQPPT
Sbjct: 181 FRPGTWQPPT 190

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: XP_023545840.1 (uncharacterized protein LOC111805151 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369 bits (946), Expect = 2.06e-128
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVST--GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180
           VVST  GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG
Sbjct: 121 VVSTVAGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180

Query: 181 QTFRPGTWQPPT 190
           QTFRPGTWQPPT
Sbjct: 181 QTFRPGTWQPPT 192

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: XP_022942431.1 (uncharacterized protein LOC111447475 isoform X1 [Cucurbita moschata])

HSP 1 Score: 365 bits (938), Expect = 3.42e-127
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVST--GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180
           VVST  GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG
Sbjct: 121 VVSTVAGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180

Query: 181 QTFRPGTWQPPT 190
           QTFRPGTWQPPT
Sbjct: 181 QTFRPGTWQPPT 192

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: KAG7031417.1 (hypothetical protein SDJN02_05457 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (936), Expect = 6.90e-127
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKK+AGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKLAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVST--GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180
           VVST  GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG
Sbjct: 121 VVSTVAGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180

Query: 181 QTFRPGTWQPPT 190
           QTFRPGTWQPPT
Sbjct: 181 QTFRPGTWQPPT 192

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy TrEMBL
Match: A0A6J1FQ79 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita moschata OX=3662 GN=LOC111447475 PE=3 SV=1)

HSP 1 Score: 370 bits (951), Expect = 1.61e-129
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT 180
           VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT
Sbjct: 121 VVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQT 180

Query: 181 FRPGTWQPPT 190
           FRPGTWQPPT
Sbjct: 181 FRPGTWQPPT 190

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy TrEMBL
Match: A0A6J1FNU8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita moschata OX=3662 GN=LOC111447475 PE=3 SV=1)

HSP 1 Score: 365 bits (938), Expect = 1.66e-127
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60
           MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE
Sbjct: 1   MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGE 60

Query: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRK 120
           DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRK
Sbjct: 61  DDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRK 120

Query: 121 VVST--GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180
           VVST  GPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG
Sbjct: 121 VVSTVAGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSG 180

Query: 181 QTFRPGTWQPPT 190
           QTFRPGTWQPPT
Sbjct: 181 QTFRPGTWQPPT 192

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy TrEMBL
Match: A0A6J1JSL7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxima OX=3661 GN=LOC111487996 PE=3 SV=1)

HSP 1 Score: 346 bits (887), Expect = 6.25e-120
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL KKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI
Sbjct: 1   MSKLFKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVSTGPNLKSF 131
           CWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRKVVSTGPNLKSF
Sbjct: 61  CWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRKVVSTGPNLKSF 120

Query: 132 IRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQPPT 190
           IRQFPTGSEGAQDNEGSAAKDSLRNS+ENEAAKE+PIPESSEPMGSGQTFRPGTWQPPT
Sbjct: 121 IRQFPTGSEGAQDNEGSAAKDSLRNSEENEAAKEKPIPESSEPMGSGQTFRPGTWQPPT 179

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy TrEMBL
Match: A0A6J1JVV8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxima OX=3661 GN=LOC111487996 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 6.43e-118
Identity = 175/181 (96.69%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL KKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI
Sbjct: 1   MSKLFKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST--GPNLK 131
           CWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMERKSKESNLRKVVST  GPNLK
Sbjct: 61  CWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERKSKESNLRKVVSTVAGPNLK 120

Query: 132 SFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQPP 190
           SFIRQFPTGSEGAQDNEGSAAKDSLRNS+ENEAAKE+PIPESSEPMGSGQTFRPGTWQPP
Sbjct: 121 SFIRQFPTGSEGAQDNEGSAAKDSLRNSEENEAAKEKPIPESSEPMGSGQTFRPGTWQPP 180

[Close]

BLAST of Cp4.1LG01g08140 vs. ExPASy TrEMBL
Match: A0A5A7SS01 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00330 PE=3 SV=1)

HSP 1 Score: 298 bits (764), Expect = 4.01e-101
Identity = 152/183 (83.06%), Postives = 163/183 (89.07%), Query Frame = 0


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL  KIAGFF++RTL+GVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI
Sbjct: 1   MSKLFGKIAGFFSNRTLVGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVSTG----PN 131
           CWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEEMER SKE  LRK++STG    P+
Sbjct: 61  CWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEMERNSKEGKLRKIISTGQVMGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 190
           LKSFIRQ PTGSEGAQD EG   +D+LRNS E E  +E+PIPESSEP+GSG TFRPGTWQ
Sbjct: 121 LKSFIRQVPTGSEGAQDVEGLPTRDTLRNSNEKEPVQEKPIPESSEPVGSGHTFRPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. TAIR 10
Match: AT4G26965.1 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-53
Identity = 108/185 (58.38%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MS+L  + AG F+ ++ +GVDK GN+YF   EEIDG +KEKRWV F+ E+DPTSIPVEWI
Sbjct: 1   MSRLWARFAGLFSSKSFIGVDKTGNKYFSRMEEIDGFVKEKRWVKFRREEDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVV---STGPNL 131
           CWLNGQRK+APTPEEM+ELEARRE V+ NVALLKKEE E+K++    RK+      GP+L
Sbjct: 61  CWLNGQRKRAPTPEEMIELEARRERVKLNVALLKKEEEEKKARVGTGRKITIGKVDGPDL 120

Query: 132 KSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENE---AAKEQPIPESSEPMGSGQTFRPGT 191
            SF+RQFP  S+G +  E S   D  R +KE+E    + E P P+++EP GSG +FRPGT
Sbjct: 121 TSFVRQFPPDSKGGEPEEASEEADKSR-AKEHEPEIVSAEPPEPKTTEPSGSGSSFRPGT 180

[Close]

BLAST of Cp4.1LG01g08140 vs. TAIR 10
Match: AT4G26965.2 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 169.1 bits (427), Expect = 3.5e-42
Identity = 90/148 (60.81%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 49  MKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEE 108
           MKEKRWV F+ E+DPTSIPVEWICWLNGQRK+APTPEEM+ELEARRE V+ NVALLKKEE
Sbjct: 1   MKEKRWVKFRREEDPTSIPVEWICWLNGQRKRAPTPEEMIELEARRERVKLNVALLKKEE 60

Query: 109 MERKSKESNLRKVV---STGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENE---A 168
            E+K++    RK+      GP+L SF+RQFP  S+G +  E S   D  R +KE+E    
Sbjct: 61  EEKKARVGTGRKITIGKVDGPDLTSFVRQFPPDSKGGEPEEASEEADKSR-AKEHEPEIV 120

Query: 169 AKEQPIPESSEPMGSGQTFRPGTWQPPT 191
           + E P P+++EP GSG +FRPGTWQPP+
Sbjct: 121 SAEPPEPKTTEPSGSGSSFRPGTWQPPS 147

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q59J78	3.6e-04	27.06	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 OS=Mus musc...	[more]
Q8N183	6.2e-04	26.19	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 OS=Homo sap...	[more]

BLAST of Cp4.1LG01g08140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545847.1	2.00e-130	100.00	uncharacterized protein LOC111805151 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022942432.1	3.32e-129	99.47	uncharacterized protein LOC111447475 isoform X2 [Cucurbita moschata]	[more]
XP_023545840.1	2.06e-128	98.96	uncharacterized protein LOC111805151 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022942431.1	3.42e-127	98.44	uncharacterized protein LOC111447475 isoform X1 [Cucurbita moschata]	[more]
KAG7031417.1	6.90e-127	97.92	hypothetical protein SDJN02_05457 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG01g08140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQ79	1.61e-129	99.47	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita mosch...	[more]
A0A6J1FNU8	1.66e-127	98.44	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita mosch...	[more]
A0A6J1JSL7	6.25e-120	97.77	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxim...	[more]
A0A6J1JVV8	6.43e-118	96.69	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxim...	[more]
A0A5A7SS01	4.01e-101	83.06	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo va...	[more]

BLAST of Cp4.1LG01g08140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26965.1	1.1e-53	58.38	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]
AT4G26965.2	3.5e-42	60.81	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..190
None	No IPR available	PANTHER	PTHR12910:SF1	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12	coord: 12..190
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PFAM	PF05071	NDUFA12	coord: 27..107 e-value: 4.6E-12 score: 46.7
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PANTHER	PTHR12910	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2	coord: 12..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08140.1	Cp4.1LG01g08140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0016020	membrane