Cp4.1LG01g08040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g08040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDUF4228 domain protein
LocationCp4.1LG01: 5141666 .. 5141917 (+)
RNA-Seq ExpressionCp4.1LG01g08040
SyntenyCp4.1LG01g08040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGAGAAGCTTCATGGCTTACGACGAGGCTCCGGTGGCCTCTGCGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAGTGTGGTGGAGGTGAAGGAAGAGCTGCAGATGGAGCATCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

mRNA sequence

ATGGTGAAGAGAAGCTTCATGGCTTACGACGAGGCTCCGGTGGCCTCTGCGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAGTGTGGTGGAGGTGAAGGAAGAGCTGCAGATGGAGCATCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Coding sequence (CDS)

ATGGTGAAGAGAAGCTTCATGGCTTACGACGAGGCTCCGGTGGCCTCTGCGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAGTGTGGTGGAGGTGAAGGAAGAGCTGCAGATGGAGCATCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Protein sequence

MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD
Homology
[Close]
BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: KAG6600784.1 (hypothetical protein SDJN03_06017, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031421.1 hypothetical protein SDJN02_05461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (386), Expect = 3.60e-46
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFY 60
           MVKRS MAYDEAPVAS TATTTELKIKITKRELEMLLANY+VVEVKEELQ E LLSPLFY
Sbjct: 25  MVKRSLMAYDEAPVASVTATTTELKIKITKRELEMLLANYNVVEVKEELQTEQLLSPLFY 84

Query: 61  VDGTLEMQPRSWQPSLQSIPEAD 83
           VDGTLEMQPRSWQPSLQSIPEAD
Sbjct: 85  VDGTLEMQPRSWQPSLQSIPEAD 107

[Close]
BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: XP_016903026.1 (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo] >KAA0033990.1 DUF4228 domain protein [Cucumis melo var. makuwa] >TYK02555.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 3.75e-27
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 1   MVKRSFMAY-------DEAP---VASATATTTELKIKITKRELEMLLANYSVVEVKEELQ 60
           M+KR+ MAY       DE P   VA+ T TTTE+KIKITKRELEMLL NY VVEVKEEL 
Sbjct: 25  MMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELS 84

Query: 61  MEHLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 83
               LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 85  TTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]
BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: XP_011652736.1 (uncharacterized protein LOC105435072 [Cucumis sativus] >KGN56121.1 hypothetical protein Csa_011128 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 4.89e-27
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 0 

Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLS-PLF 60
           M+KR  MAYDE P +S  ATTTE+KIKITK+ELEMLL NY+VVEVK+EL   H  S P+ 
Sbjct: 26  MMKRRIMAYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIV 85

Query: 61  Y-----VDGTLEMQPRSWQPSLQSIPEAD 83
                 +D   EMQPRSW+PSLQSIPE D
Sbjct: 86  ELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]
BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: XP_038904231.1 (uncharacterized protein LOC120090574 [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 3.21e-11
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 2   VKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFYV 61
           V+R  + +D A   SA  TTTELKI+ITKRELE LL+   V    EEL +  LLS L  V
Sbjct: 27  VRRRLVVHDGARKCSAN-TTTELKIRITKRELEKLLSKVDV----EELPVTELLSQLIDV 86

Query: 62  DGTLEM-QPRSWQPSLQSIPEAD 83
               E    RSW+PSLQSIPE +
Sbjct: 87  GDAFESTHQRSWRPSLQSIPEVN 104

[Close]
BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: XP_031739098.1 (uncharacterized protein LOC116402843 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.65e-11
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFY 60
           M++R  +  + A   SA+ TTTELKI+ITKRELE LL    V    EEL +  LLS L  
Sbjct: 27  MLRRRLVVKNGAQKCSAS-TTTELKIRITKRELEKLLCKVDV----EELPVTELLSKLID 86

Query: 61  VDGTLEM-QPRSWQPSLQSIPEAD 83
           V  T E    RSW+PSLQSIPE +
Sbjct: 87  VGDTFESTHQRSWRPSLQSIPEVN 105

[Close]
BLAST of Cp4.1LG01g08040 vs. ExPASy TrEMBL
Match: A0A5D3BTP7 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00060 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.82e-27
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 1   MVKRSFMAY-------DEAP---VASATATTTELKIKITKRELEMLLANYSVVEVKEELQ 60
           M+KR+ MAY       DE P   VA+ T TTTE+KIKITKRELEMLL NY VVEVKEEL 
Sbjct: 25  MMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELS 84

Query: 61  MEHLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 83
               LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 85  TTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]
BLAST of Cp4.1LG01g08040 vs. ExPASy TrEMBL
Match: A0A1S4E465 (uncharacterized protein LOC103501581 OS=Cucumis melo OX=3656 GN=LOC103501581 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.82e-27
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 1   MVKRSFMAY-------DEAP---VASATATTTELKIKITKRELEMLLANYSVVEVKEELQ 60
           M+KR+ MAY       DE P   VA+ T TTTE+KIKITKRELEMLL NY VVEVKEEL 
Sbjct: 25  MMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELS 84

Query: 61  MEHLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 83
               LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 85  TTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]
BLAST of Cp4.1LG01g08040 vs. ExPASy TrEMBL
Match: A0A0A0L7M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 2.37e-27
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 0 

Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLS-PLF 60
           M+KR  MAYDE P +S  ATTTE+KIKITK+ELEMLL NY+VVEVK+EL   H  S P+ 
Sbjct: 26  MMKRRIMAYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIV 85

Query: 61  Y-----VDGTLEMQPRSWQPSLQSIPEAD 83
                 +D   EMQPRSW+PSLQSIPE D
Sbjct: 86  ELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]
BLAST of Cp4.1LG01g08040 vs. ExPASy TrEMBL
Match: A0A0A0L2D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.25e-11
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFY 60
           M++R  +  + A   SA+ TTTELKI+ITKRELE LL    V    EEL +  LLS L  
Sbjct: 27  MLRRRLVVKNGAQKCSAS-TTTELKIRITKRELEKLLCKVDV----EELPVTELLSKLID 86

Query: 61  VDGTLEM-QPRSWQPSLQSIPEAD 83
           V  T E    RSW+PSLQSIPE +
Sbjct: 87  VGDTFESTHQRSWRPSLQSIPEVN 105

[Close]
BLAST of Cp4.1LG01g08040 vs. ExPASy TrEMBL
Match: A0A6A1WS92 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G024734 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.12e-11
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 4   RSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFYVDG 63
           R F     A  A+AT TTTE+K+KIT+++LE LL     V++KE L +  +L+ L  V  
Sbjct: 56  RGFFPSSAATTAAATTTTTEVKVKITRKQLEELLGR---VDIKE-LSVHQVLAQLINVSD 115

Query: 64  TLEMQPRSWQPSLQSIPEAD 83
             E   RSW+P+LQSIPE +
Sbjct: 116 RYEKHQRSWRPALQSIPEVN 131

[Close]
BLAST of Cp4.1LG01g08040 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 15  ASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFY----------VDGT 74
           +S+++   E+KI+ITK+ELE L+ N  +    + L  E +LS L +          VD T
Sbjct: 57  SSSSSERREIKIRITKKELEDLMRNIGL----KSLTAEEILSKLIFEGGDQIGFSAVDVT 116

Query: 75  LEMQPRSWQPSLQSIPEAD 84
              QP  W+P LQSIPE D
Sbjct: 117 NHHQP--WKPVLQSIPEMD 129

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g08040 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600784.13.60e-4693.98hypothetical protein SDJN03_06017, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_016903026.13.75e-2763.44PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo] >KAA0033990.1 DUF... [more]
XP_011652736.14.89e-2762.92uncharacterized protein LOC105435072 [Cucumis sativus] >KGN56121.1 hypothetical ... [more]
XP_038904231.13.21e-1151.81uncharacterized protein LOC120090574 [Benincasa hispida][more]
XP_031739098.14.65e-1151.19uncharacterized protein LOC116402843 [Cucumis sativus][more]
BLAST of Cp4.1LG01g08040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTP71.82e-2763.44DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
A0A1S4E4651.82e-2763.44uncharacterized protein LOC103501581 OS=Cucumis melo OX=3656 GN=LOC103501581 PE=... [more]
A0A0A0L7M32.37e-2762.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076570 PE=4 SV=1[more]
A0A0A0L2D82.25e-1151.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1[more]
A0A6A1WS924.12e-1145.00Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G024734 PE=4 SV=1[more]
BLAST of Cp4.1LG01g08040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21920.12.1e-0439.24unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 12..82
NoneNo IPR availablePANTHERPTHR33647:SF5OS01G0793900 PROTEINcoord: 12..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08040.1Cp4.1LG01g08040.1mRNA