Cp4.1LG01g07790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g07790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CLAVATA3/ESR-RELATED 16
Location	Cp4.1LG01: 5321598 .. 5321921 (+)
RNA-Seq Expression	Cp4.1LG01g07790
Synteny	Cp4.1LG01g07790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAACGGCACGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCCGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAGTCCGCCACCCTTCACCGGAAGACCCATGTTTTTGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

mRNA sequence

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAACGGCACGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCCGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAGTCCGCCACCCTTCACCGGAAGACCCATGTTTTTGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAACGGCACGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCCGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAGTCCGCCACCCTTCACCGGAAGACCCATGTTTTTGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

Protein sequence

MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN

Homology

[Close]

BLAST of Cp4.1LG01g07790 vs. ExPASy Swiss-Prot
Match: Q8S8M2 (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 26  AAIFFICLIFVLSRMTLSSAAVRGV-NVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHA 85
           AA+FF C IFV ++  +SS+A+    + P+L + A    +   F+  +      G +   
Sbjct: 22  AAVFF-CGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQAPKATVSFTGQRREE 81

Query: 86  DVADIVYEDDKRVVHTGPNPLHN 108
           +  D VY+DDKR+VHTGPNPLHN
Sbjct: 82  ENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: KAG6600814.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031451.1 CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 1.28e-68
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGRNGGNGTKR AGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT
Sbjct: 1   MRVGVERGRNGGNGTKRQAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN 107
           LHRKTHVFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN
Sbjct: 61  LHRKTHVFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN 107

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: KAA0063335.1 (putative Clavata3/esr-related 16 [Cucumis melo var. makuwa] >TYK03325.1 putative Clavata3/esr-related 16 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 8.77e-47
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGRNGG G KR AG     AAIFFI LI ++SRM LSSAA++ VNV  L KS  
Sbjct: 1   MRVGVERGRNGGKGRKREAG---AVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 107
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: KAE8648231.1 (hypothetical protein Csa_018474 [Cucumis sativus])

HSP 1 Score: 126 bits (317), Expect = 2.52e-35
Identity = 71/102 (69.61%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1  MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
          MRVGVERGRNGG G K  AG     AAIFFI LI V+SRM LSSAA + VN   LTKS  
Sbjct: 1  MRVGVERGRNGGKGRKGEAG---AVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTV 60

Query: 61 LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRV 97
          LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKR+
Sbjct: 61 LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 99

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: PNT15890.1 (hypothetical protein POPTR_010G111200 [Populus trichocarpa])

HSP 1 Score: 59.7 bits (143), Expect = 6.74e-09
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 2   RVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATL 61
           +VGVE  R      +R+AG A  AA IF   ++ +L+++ +        + P      +L
Sbjct: 6   KVGVEAAR-----ARRYAG-AARAAIIFLFWILLILAQLGVFLVVHEETDKPV----KSL 65

Query: 62  HRKTHVFETEEVFKPP---AGFKIHADVADIVYEDDKRVVHTGPNPLHN 107
            RK  VFET  V   P       I     D VYEDDKR +HTGPNPLHN
Sbjct: 66  PRKARVFETGSVHASPNQDQPVNIDGGDPDAVYEDDKRTIHTGPNPLHN 104

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: ESR61476.1 (hypothetical protein CICLE_v10017256mg [Citrus clementina])

HSP 1 Score: 58.9 bits (141), Expect = 1.51e-08
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           M++ V R      G +R   GA  A+  F++ LIF L  +  +       +  T T S+ 
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALH-----DDETGTYSSF 60

Query: 61  LHRKTHVFETEEVFKPP----AGFKIHADV---ADIVYEDDKRVVHTGPNPLHN 107
             RKT  F TE  F  P    +G  +  +       VYEDDKR++HTGPNPLHN
Sbjct: 61  SARKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. ExPASy TrEMBL
Match: A0A5A7VBQ7 (Putative Clavata3/esr-related 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19870G00010 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 4.25e-47
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGRNGG G KR AG     AAIFFI LI ++SRM LSSAA++ VNV  L KS  
Sbjct: 1   MRVGVERGRNGGKGRKREAG---AVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 107
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. ExPASy TrEMBL
Match: A0A0A0KIX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.86e-45
Identity = 81/112 (72.32%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGRNGG G K  AG     AAIFFI LI V+SRM LSSAA + VN   LTKS  
Sbjct: 1   MRVGVERGRNGGKGRKGEAG---AVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 107
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. ExPASy TrEMBL
Match: B9HW54 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G111200 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.26e-09
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 2   RVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATL 61
           +VGVE  R      +R+AG A  AA IF   ++ +L+++ +        + P      +L
Sbjct: 6   KVGVEAAR-----ARRYAG-AARAAIIFLFWILLILAQLGVFLVVHEETDKPV----KSL 65

Query: 62  HRKTHVFETEEVFKPP---AGFKIHADVADIVYEDDKRVVHTGPNPLHN 107
            RK  VFET  V   P       I     D VYEDDKR +HTGPNPLHN
Sbjct: 66  PRKARVFETGSVHASPNQDQPVNIDGGDPDAVYEDDKRTIHTGPNPLHN 104

[Close]

BLAST of Cp4.1LG01g07790 vs. ExPASy TrEMBL
Match: V4UGP5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.30e-09
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           M++ V R      G +R   GA  A+  F++ LIF L  +  +       +  T T S+ 
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALH-----DDETGTYSSF 60

Query: 61  LHRKTHVFETEEVFKPP----AGFKIHADV---ADIVYEDDKRVVHTGPNPLHN 107
             RKT  F TE  F  P    +G  +  +       VYEDDKR++HTGPNPLHN
Sbjct: 61  SARKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. ExPASy TrEMBL
Match: A0A067FB56 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.32e-08
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 14  GTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATLHRKTHVFETEEV 73
           G +R   GA  A+  F++ LIF L  +  +       +  T T S+   RKT  F TE  
Sbjct: 25  GRRRRCAGAKAASFFFWVILIFSLLGLLCALH-----DDETGTYSSFSARKTRSFNTEST 84

Query: 74  FKPP----AGFKIHADV---ADIVYEDDKRVVHTGPNPLHN 107
           F  P    +G  +  +       VYEDDKR++HTGPNPLHN
Sbjct: 85  FHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Cp4.1LG01g07790 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-08
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 26  AAIFFICLIFVLSRMTLSSAAVRGV-NVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHA 85
           AA+FF C IFV ++  +SS+A+    + P+L + A    +   F+  +      G +   
Sbjct: 22  AAVFF-CGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQAPKATVSFTGQRREE 81

Query: 86  DVADIVYEDDKRVVHTGPNPLHN 108
           +  D VY+DDKR+VHTGPNPLHN
Sbjct: 82  ENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Cp4.1LG01g07790 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 36/101 (35.64%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 9   RNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKS--ATLHRKTH 68
           R  G G KR     +      F  + +V  ++ LSS+A  G +   L  S      RK  
Sbjct: 7   RRQGQGKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKAL 66

Query: 69  VFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN 108
            + T   F+ P          D +Y DDKRVVHTGPNPLHN
Sbjct: 67  RYSTAP-FRGPLS-------RDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Cp4.1LG01g07790 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 36/101 (35.64%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 9   RNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKS--ATLHRKTH 68
           R  G G KR     +      F  + +V  ++ LSS+A  G +   L  S      RK  
Sbjct: 7   RRQGQGKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKAL 66

Query: 69  VFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN 108
            + T   F+ P          D +Y DDKRVVHTGPNPLHN
Sbjct: 67  RYSTAP-FRGPLS-------RDDIYGDDKRVVHTGPNPLHN 99

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g07790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8M2	1.3e-06	39.76	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 P...	[more]

BLAST of Cp4.1LG01g07790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600814.1	1.28e-68	99.07	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KAA0063335.1	8.77e-47	72.32	putative Clavata3/esr-related 16 [Cucumis melo var. makuwa] >TYK03325.1 putative...	[more]
KAE8648231.1	2.52e-35	69.61	hypothetical protein Csa_018474 [Cucumis sativus]	[more]
PNT15890.1	6.74e-09	38.53	hypothetical protein POPTR_010G111200 [Populus trichocarpa]	[more]
ESR61476.1	1.51e-08	35.96	hypothetical protein CICLE_v10017256mg [Citrus clementina]	[more]

BLAST of Cp4.1LG01g07790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBQ7	4.25e-47	72.32	Putative Clavata3/esr-related 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KIX6	2.86e-45	72.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1	[more]
B9HW54	3.26e-09	38.53	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G111200 PE=4 ...	[more]
V4UGP5	7.30e-09	35.96	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 ...	[more]
A0A067FB56	1.32e-08	37.62	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706m...	[more]

BLAST of Cp4.1LG01g07790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01505.1	9.1e-08	39.76	CLAVATA3/ESR-RELATED 16	[more]
AT1G70895.1	1.2e-04	35.64	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.2e-04	35.64	CLAVATA3/ESR-RELATED 17	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 13..107
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 13..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g07790.1	Cp4.1LG01g07790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010078	maintenance of root meristem identity
biological_process	GO:0010088	phloem development
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0048731	system development
cellular_component	GO:0005576	extracellular region