Cp4.1LG01g07630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g07630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	myb-related transcription factor, partner of profilin-like
Location	Cp4.1LG01: 5414134 .. 5414511 (+)
RNA-Seq Expression	Cp4.1LG01g07630
Synteny	Cp4.1LG01g07630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCATCTTCTTTCTCTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCGCCTCCTCCGTCGTCTTTCATATACATACTCGGCCCCCCTGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCATCTTCTTTCTCTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCGCCTCCTCCGTCGTCTTTCATATACATACTCGGCCCCCCTGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCATCTTCTTTCTCTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCGCCTCCTCCGTCGTCTTTCATATACATACTCGGCCCCCCTGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Protein sequence

MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV

Homology

[Close]

BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241 bits (616), Expect = 3.03e-80
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 236 bits (601), Expect = 5.89e-78
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFI SFF FFLS NVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (585), Expect = 1.57e-75
Identity = 121/125 (96.80%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFIFSFF F LSINVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFSFF-FVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 124

[Close]

BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (581), Expect = 6.40e-75
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFIFSF +F LSINVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFSF-LFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 124

[Close]

BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_004723 [Cucumis sativus])

HSP 1 Score: 149 bits (376), Expect = 1.14e-43
Identity = 84/123 (68.29%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L I  FF+  LSIN+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLI-LSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFL 123
           G +
Sbjct: 121 GLI 122

[Close]

BLAST of Cp4.1LG01g07630 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 236 bits (601), Expect = 2.85e-78
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFI SFF FFLS NVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Cp4.1LG01g07630 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 5.52e-44
Identity = 84/123 (68.29%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L I  FF+  LSIN+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLI-LSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFL 123
           G +
Sbjct: 121 GLI 122

[Close]

BLAST of Cp4.1LG01g07630 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 2.06e-40
Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 21  LSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCT--HNPPPPPPPPKKPSPAYCPPPPPP 80
           LSINVV  HG +SS KLD STGGD  +VKCTPCT  + PPPPPPPPKKP  +YCPPPPPP
Sbjct: 14  LSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPP 73

Query: 81  PSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 125
           PSSFIY+LGPPGNLYPI +DFAG  RRRVAVEL  VAL GL+GF+ V
Sbjct: 74  PSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLGLMGFIAV 118

[Close]

BLAST of Cp4.1LG01g07630 vs. ExPASy TrEMBL
Match: A0A2C9UFM0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G127400 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.37e-19
Identity = 57/105 (54.29%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 32  LSSKKLDESTGGDDPSVKCTPCTHNPPPPPPP-------------PKKPSPAYCPPPPPP 91
           L S+KLDE+T       KCTPCT  PPPPPPP             PKKP  + CPPPPP 
Sbjct: 25  LDSRKLDENTAPGSTDQKCTPCTATPPPPPPPSPCPPPPALPPPTPKKPPSSNCPPPPP- 84

Query: 92  PSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFL 123
             SFIYI GPPGNLYP+D DF+GA R  VA  L A+   GL+ FL
Sbjct: 85  --SFIYISGPPGNLYPVDNDFSGAGRTTVA-GLPALIGCGLLAFL 125

[Close]

BLAST of Cp4.1LG01g07630 vs. ExPASy TrEMBL
Match: A0A6J1B199 (mulatexin-like OS=Herrania umbratica OX=108875 GN=LOC110423197 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.81e-19
Identity = 62/121 (51.24%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 18  IFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------PPP 77
           IFF+   V      L S+KLDEST   DP VKC+P CT +PPPP             PPP
Sbjct: 17  IFFVVATVAYPTNSLESRKLDESTAPGDPGVKCSPSCTPSPPPPSPPPPCPPPPALPPPP 76

Query: 78  PKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI-GF 123
           PKK    YCPPPP PPS FIY+ GPPG+LYP+D+DF GA R         V L GL+ GF
Sbjct: 77  PKKSPTKYCPPPPSPPS-FIYMTGPPGSLYPVDQDFGGASRN------LEVGLLGLVCGF 130

[Close]

BLAST of Cp4.1LG01g07630 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPPPPPPKKPSPAYCPP---------------- 91
           L ++KLDE     DP +KC+P C  NPPPP PPP  P P  CPP                
Sbjct: 38  LEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 92  PPPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIGFL 124
           PPPPP++F+YI GPPGNLYP+D  F A A +  + V+LS +  FG++ FL
Sbjct: 98  PPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]

BLAST of Cp4.1LG01g07630 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-12
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 18  IFFLSINVVLTHGFLS-SKKLDESTGGDDPSVKCTPCTHN-PPPPPPPPKKPSPAY-CPP 77
           + FL+  +++     S ++KL+E     DP +KCTPC  N PPP PPPP  P P+  CPP
Sbjct: 57  VVFLTFPMIINASDSSTNRKLEE-----DP-IKCTPCLQNIPPPSPPPPSPPPPSQACPP 116

Query: 78  P------------PPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIG 124
           P            PPPPS++IY+ GPPG LYPID+ F A   +    V++S +  FG++ 
Sbjct: 117 PPLPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTKSFTVVKISGLIAFGVMS 172

[Close]

BLAST of Cp4.1LG01g07630 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.5e-05
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 46  PSVKCTPCTHNPPPP-PPPPKKPS--PAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGA 105
           PS     CT +PPPP PPPPKK S  P+  PPPPPPP        PPG+LYPI+  +  A
Sbjct: 53  PSPPPPSCTPSPPPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTYPPGDLYPIENYYGAA 112

Query: 106 DRRRVAVELSAVA---LFGLIGFL 124
               VAVE  +V    +FG++ FL
Sbjct: 113 ----VAVESFSVMKLFVFGVMVFL 132

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g07630 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g07630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546806.1	3.03e-80	100.00	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
XP_022942055.1	5.89e-78	97.60	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
KAG6600825.1	1.57e-75	96.80	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031461.1	6.40e-75	96.00	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN50831.1	1.14e-43	68.29	hypothetical protein Csa_004723 [Cucumis sativus]	[more]

BLAST of Cp4.1LG01g07630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH5	2.85e-78	97.60	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A0A0KSV7	5.52e-44	68.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A6J1DRJ1	2.06e-40	74.77	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A2C9UFM0	2.37e-19	54.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G127400 PE=4 SV=...	[more]
A0A6J1B199	3.81e-19	51.24	mulatexin-like OS=Herrania umbratica OX=108875 GN=LOC110423197 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g07630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23040.1	1.5e-14	46.36	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	7.1e-12	41.80	proline-rich family protein	[more]
AT1G02405.1	8.5e-05	47.62	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..74
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 5..123
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 5..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g07630.1	Cp4.1LG01g07630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity