Cp4.1LG01g07530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g07530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	30S ribosomal protein S17, chloroplastic
Location	Cp4.1LG01: 5442119 .. 5447675 (+)
RNA-Seq Expression	Cp4.1LG01g07530
Synteny	Cp4.1LG01g07530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCAGTCATCGGACATCATAACCAACGTAGCTATCCTTTCCAAACCCTACCACCCACTGTACGCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAACCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGGTTTTTTATTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAGTCCCATTTCTACTCCCCAATTAATTTTTTCTTTTTCATTCCAATTTAATCAACCATGTTTTCGACTCGATTTTGAGTTTCAGTTACAATATCGTGTAATTTGCTTGACTACACTGTAATACTGGATGAAATGGCTAATATTCTCCGTATATTGAAGAATCTCGCATGTTTTCGCGAATGTTCTTTGTGTTTGGAGAGTTTGTTCGTTCAATTTGCAAATGCATAATGTTCATTTATATTAATCTTGTCGCGTTTTTATTTCTCTGGAACATGAACCGAGGGTACTTTAATATTTGAACGTTTATAATTTCTAATCCACTGATGAAACAAATTGAATTTTATAATATCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCTTTGTTTTATAGAAAGCCAAACTTGTATTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAGTCCCATTTCTACTCCCCAATTAATTTTTTCTTTTTCATTCCAATTTAATCAACCATGTTTTCGACTCGATTTTGAGTTTCAGTTACAATATCGTGTAATTTGCTTGACTACACTGTAATACTGGATGAAATGGCTAATATTCTCCGTATATTGAAGAATCTCGCATGTTTTCGCGAATGTTCTTTGTGTTTGGAGAGTTTGTTCGTTCAATTTGCAAATGCATAATGTTCATTTATATTAATCTTGTCGCGTTTTTATTTCTCTGGAACATGAACCGAGGGTACTTTAATATTTGAACGTTTATAATTTCTAATCCACTGATGAAACAAATTGAATTTTATAATATCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCTTTGTTTTATAGAAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGACTATTTGTATGATATTGTTGTTTAAACATTGTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATACATCTTTAATGTTCTGTAAACAATATTTGATAATTAGCATCTTTCTTGGTGGCATGATAGGTCCATGACTAGTTCTTGCTAATGTAATGACAACATTGTGCGCATCCAGCTAAGAAGATTTAGTAATAAAACTAAAATGAATTATTTTGGTAGTCTTGAAACTAATGTACTTAGGGTGGTGGCTTTCGTGCTGCATTGACACATGTAATGTTTTACCTTGAATTGTTTTGTGGGAACTCAAGATGCCCTTCCCATGGTATTGTGATCATTTGTTTGGCGTTTGATGATTAGAGCCTTGTATTTTATTTGCTTCATTAGGCTTCATTTAGGCATTTGTTTCATTTAAACGTTTGTTGTATCTTTTAATTTGGGGAAATTTGTATCCCCCCTCCCCGATAAAAAGGGAACATAACGATAGTAGTTATTGGAAGGTCCTTTCATAATAATTGATTTTATGTTCATTCTGCCCTCCAATTACTTGTTAATGTTTTGAATTATTCACCTTTTATCCAGATAATGCATTGCTTAGAATTCAGGGTTTTGATCAACCAGATAGCTGTCTTTAAAATACTTGTTGGTGATTGTTCAAATTTTTTATTTGAAGTTTGAGCTATAGGATGCTTGTCTTCCGAAAGTCCTATGTTGTTCCTAGCTATTGTGGTTGGAATAAGGTCAAAAACAATCTCTTTCACTTGTCATTTTAGAATTACTTGGAACCTTCAAAACCAACATGCATCAGGTAGCCATACACCTAAGATTTAAAATCATACAAGTTTGCTTGTCAACCAAATGTAGTGGGGTCAAATGGTTCGGACAGAAAACCGTCAATACCATGCTGGATTCTTTTGGAGGTTTAAATGGTATGATTGCATTAGCATGGTAAACTACACAGTGAGAGGGCTGAATCATGTGAATAAAATCAAAGTTAAAAGGAAAATTTAGTGGCTTTCTTTCAGTGAAAATAGAGTTTTCAAAGGTGCTGGTCCCAGCAACACTGTCCTTTTCTCCTCAGAGAGTTACATGGCTATTATGGAAACATGTCAGTGGATATTTGTTGATAGATGCTCCGTAATGTTAAACGAGTTTAATATACTATGCAAACCTTATATTTTCAATTAAAGGCGGAGAGGAAAGTTTCTTGGTCGTCCGAGGTTTCCTCAAAATAAGAAAAGGGAAATGGTTGATTTTATGAAGTCAAATCAATAGACTTTTCAACTTTTGACCACATTTCTTTGAAGGAGGAGATAAACACCTGTAGCACCTTGGATTCTTGAAAGTTGGAAGGTGCAAAGCAAACATTTTTCCGAAGGAGCTATAAAGGTACTACTGTTTAATGAAGATTTAAATCTGAAGTACAAGTAGACATTTGAGAGATAGAGCTCACTGTGGTTTGGTTAGACACTTTATATAGTAATCCAATCCTAATTTTGTTGTTGTCCAAGAAATAAAATTCAGAGAAGTTAATAGAAAATTAGTTGAATCTTCATGGAGTTCCAAGATCATTGCAAATGACTACTTTCAATGCATTGGGTCTATCGGGGCTTTTTTATTTTATTGAACAACCCTTATTTATGTTTTGATAGGTTTTCATGATTGTAACTGGGTCTTGGGAGTAATCTCAATGTGGTAAGATGATCGAGAGAATAATCTCAAGTAGTAATAGATTTACTTCCAGCATGAAGAATTCTATCTCTTTTTGACCCTCTAGAAAAGGAGGCCTTTTACATGGTCAAACATGAGAGAAAGCTCGTCTTTCTTGTTTGGTCAAATTCTTTCTCCTATGCTTTTCTGTACGAGTTTCTAAATTTTCATATGAGTGGGGTTGAATAGGAGCACATCTGACTATTATCCAATTTTCCTTGAAGTTGGTAATTTGGATGGGTGAACTCCCTTTCGTTTTGATTATGTTCAGTAGGTTCATGCTGAGTTCCTTCGTGTATGCAAAACATGGTGGAACCGTTTACTAGATATTAGGTTATTTGGGCCATTCTTCTATCTTAAAACTGAAAGATCTAAAGGGAAAAATTAGAATGTGAAAAAAGAGTTTTGGAAATGTTAATAGTATTGCTACTCTGGATGCCTTAGATGAGGAAAGAAACTTATCTCAAAATGAAAGTAGCTCTACAACATTAATGAAAACAAATTGCTGAGATTATCCTCAAAGAGGATATGTTAGGAAGATCAAAGTGCCAACCAAAATGGTGAAAGAAGGGTGAGGAAAACTGTTACTTCTTTCACACTATAACTCCGCTATAAAGAAAAAAGAGTTTCGTTTTGGAAATTCATTTGGAGGATGGCAGATGTCAGGTCATTGCTTAGCAAGTAGAAGGGAAATCAAATTTGCATCCTCTTCATCTTTATTTCCAAAGGGTCATAATTTAGTCCAATTATTTCTCCATTGGATATTGATTGGCTGTATATCCTATTGATAAGTTTTCGGGATGTTAACGACCAATGAGTTTTGTTTGTAAGGAATGGAGATTGGTGAAACTTAAATGAGCTCCATCTTATTGTCGTCAATGATTTTGGTTTGAACAAGGGAGAACTTCAATGAGCGTATCCCATTAATGATTTTGGTTTGAGTAAGAAGTGGAAATTACTGAATATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCTTTAATTCCAAAAAATTTAGTGACAAATGTTTGAGTTCAAGCCAATTAAGCCTTGCCTCCCATTTGCAGAAACTTTTCCTAATATGCTTTTTTTGTTATCTTCCGGCTACTTTGTGTAGAGATCTGAGCTGAATATCCATAAAAGATGCCCCCAAACGTATCTTGACATCAAGTGTTGCTTCTTGTTTAAGAATTATGTGGAAGGGAAGATTAGGATCATATGTTCTCGGGGTGCCCTTTGTTTCTATTTGGGAAGGTTTTGTGATAGTTTCAACTAATGGATTGTAGTCCCTACAAGATCTTGGATGATTCCTAACTTCTATTAACACAAATATCTTTGTAGTAATTACCAATTTGAACATAGTTAGAGGCTTGAATCTCCACCCTTCATTTTTGTTGAACTTTTTATTTTTATTTATTTATTTTGCAGTAATAGGTCTGAACAGAAAATATTAGGTGCTTTGTTTTGAAGGTTTTCATGCTAGCTACCCTCTTGGGAGTTAGGTGGGATGAACTAGTAGATTCTTTAAAGATGAGTGATCCATGGATGATTCTGTAGTTAGCTATTGTTTTGCCTCTTCATGTGCCTTGTAACTTCCTTCAACAATCATTCAATTTTTTATGGTTCAACCTAATGGGACATTGCATGTATATAATTTCTTCACAACTCAGTTAAGTTGATTCCCTCTCCCTTCTATTGTTTTCTTTCATCAATGTGAACAACTGCTAATCTGTCTCACATTTATGTAAAGACTCTTACAAGAATATTTGTTTGCACAACAATTGAACAGGGGAAACTACTGCAAACCACATACGAGACCGAACCAGATAAAAAAAGAAAAAACGAAATTGATCGAAAAACCGAAGAACGAAAGCTCTGGAAATGAACTACTACTGTAATGTAAGCAGTATGTATGTTTCTGATGCTAAAGATTTGTAGTTACATTAGCATTACGTTATGTATTGATGTGTGAACCTATTTTTGTTCTCCCTATCAGGATTTATTTCCATAAGTTTCTTTTTGTGAGGTTGTTGAAAGTGCATAATAAAGTACTCAAAAAGGTTTCATCTAATTTAATACTTGGATTGTGTTGAA

mRNA sequence

CACCAGTCATCGGACATCATAACCAACGTAGCTATCCTTTCCAAACCCTACCACCCACTGTACGCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAACCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGGTTTTTTATTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGCCAAACTTGTATTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGGGAAACTACTGCAAACCACATACGAGACCGAACCAGATAAAAAAAGAAAAAACGAAATTGATCGAAAAACCGAAGAACGAAAGCTCTGGAAATGAACTACTACTGTAATGTAAGCAGTATGTATGTTTCTGATGCTAAAGATTTGTAGTTACATTAGCATTACGTTATGTATTGATGTGTGAACCTATTTTTGTTCTCCCTATCAGGATTTATTTCCATAAGTTTCTTTTTGTGAGGTTGTTGAAAGTGCATAATAAAGTACTCAAAAAGGTTTCATCTAATTTAATACTTGGATTGTGTTGAA

Coding sequence (CDS)

ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGCCAAACTTGTATTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQPNLYFRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT

Homology

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy Swiss-Prot
Match: B1I1J7 (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-21
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 100 RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKL 159
           R   K   G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+
Sbjct: 3   RKSRKVRTGRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKI 62

Query: 160 DPSRPLSKHKRWVVAEILRKARI 183
             +RPLS+HKRW VAE+L +++I
Sbjct: 63  AETRPLSRHKRWRVAEVLERSQI 85

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy Swiss-Prot
Match: A7HM43 (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 104 KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 163
           K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4   KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 164 PLSKHKRWVVAEILRKARIYQPPSQENQVVSDKG 198
           PLSK KRWVV  IL ++++ + P  E  +  + G
Sbjct: 64  PLSKLKRWVVVNILERSKLSETPEIEETIDIEGG 97

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy Swiss-Prot
Match: Q8R7W3 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-20
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 100 RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKL 159
           RG+ K  +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+
Sbjct: 3   RGQRKVRIGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKI 62

Query: 160 DPSRPLSKHKRWVVAEILRKA 181
             +RPLSK KRW + E+++KA
Sbjct: 63  METRPLSKEKRWRLVEVIKKA 83

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy Swiss-Prot
Match: B9MKH2 (30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 100 RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKL 159
           RG  K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GD+V +
Sbjct: 5   RGMRKTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLI 64

Query: 160 DPSRPLSKHKRWVVAEILRKAR 182
             +RPLSK KRW V +IL +A+
Sbjct: 65  METRPLSKEKRWRVVQILERAK 86

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy Swiss-Prot
Match: A4XLS1 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 100 RGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKL 159
           RG  K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GD+V +
Sbjct: 5   RGMRKTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLI 64

Query: 160 DPSRPLSKHKRWVVAEILRKAR 182
             +RPLSK KRW V +IL +A+
Sbjct: 65  METRPLSKEKRWRVVQILERAK 86

[Close]

BLAST of Cp4.1LG01g07530 vs. NCBI nr
Match: XP_022943007.1 (uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_023549349.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549358.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549366.1 uncharacterized protein LOC111807726 isoform X2 [Cucurbita pepo subsp. pepo] >KAG7031466.1 rpsQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208 bits (530), Expect = 4.33e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 103 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 162
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 163 RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Cp4.1LG01g07530 vs. NCBI nr
Match: XP_022989005.1 (uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharacterized protein LOC111486195 [Cucurbita maxima])

HSP 1 Score: 207 bits (527), Expect = 1.24e-65
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 103 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 162
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 163 RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           RPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Cp4.1LG01g07530 vs. NCBI nr
Match: KAE8649314.1 (hypothetical protein Csa_015070 [Cucumis sativus])

HSP 1 Score: 202 bits (514), Expect = 5.06e-63
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 94  FRGFNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNI 153
           FR FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNI
Sbjct: 37  FRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNI 96

Query: 154 GDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           GDRVKLDPSRPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAPSTT
Sbjct: 97  GDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 148

[Close]

BLAST of Cp4.1LG01g07530 vs. NCBI nr
Match: KAA0041013.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 6.89e-62
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 97  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 156
           FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR
Sbjct: 45  FNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 104

Query: 157 VKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           VKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 105 VKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Cp4.1LG01g07530 vs. NCBI nr
Match: TYK20371.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 6.89e-62
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 97  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 156
           FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR
Sbjct: 45  FNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 104

Query: 157 VKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           VKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 105 VKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy TrEMBL
Match: A0A6J1FRT9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447872 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 2.10e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 103 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 162
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 163 RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy TrEMBL
Match: A0A6J1JP01 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486195 PE=3 SV=1)

HSP 1 Score: 207 bits (527), Expect = 6.00e-66
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 103 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 162
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 163 RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           RPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy TrEMBL
Match: A0A5D3D9X1 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00680 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 3.34e-62
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 97  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 156
           FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR
Sbjct: 45  FNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 104

Query: 157 VKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           VKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 105 VKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy TrEMBL
Match: A0A5A7TD01 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G002330 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 3.34e-62
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 97  FNLRGKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 156
           FN   KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR
Sbjct: 45  FNRLPKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDR 104

Query: 157 VKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           VKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 105 VKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Cp4.1LG01g07530 vs. ExPASy TrEMBL
Match: A0A1S4E5I9 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 195 bits (496), Expect = 3.11e-61
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 103 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 162
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 163 RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 205
           RPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]

BLAST of Cp4.1LG01g07530 vs. TAIR 10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 103 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 162
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 163 RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 206
           RPLSK+K W+VAEI++KARIY P +     VS     S+ STT
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAA-AAVSASASASSASTT 102

[Close]

BLAST of Cp4.1LG01g07530 vs. TAIR 10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1  MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQP 84
          RPLSKHK W+V+EI++KARIY P
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSP 83

[Close]

BLAST of Cp4.1LG01g07530 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKHKRWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]

BLAST of Cp4.1LG01g07530 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 6   GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLS 65
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 66  KHKRWVVAEIL 76
           K  R+ V +++
Sbjct: 134 KTVRFNVLKVI 144

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g07530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1I1J7	2.7e-21	61.45	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ...	[more]
A7HM43	1.8e-20	51.06	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
Q8R7W3	3.0e-20	58.02	30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
B9MKH2	1.1e-19	57.32	30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /...	[more]
A4XLS1	1.1e-19	56.10	30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]

BLAST of Cp4.1LG01g07530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943007.1	4.33e-66	100.00	uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 unchar...	[more]
XP_022989005.1	1.24e-65	99.03	uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharac...	[more]
KAE8649314.1	5.06e-63	90.18	hypothetical protein Csa_015070 [Cucumis sativus]	[more]
KAA0041013.1	6.89e-62	90.83	30S ribosomal protein S17-like [Cucumis melo var. makuwa]	[more]
TYK20371.1	6.89e-62	90.83	30S ribosomal protein S17-like [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG01g07530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRT9	2.10e-66	100.00	30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JP01	6.00e-66	99.03	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5D3D9X1	3.34e-62	90.83	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TD01	3.34e-62	90.83	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4E5I9	3.11e-61	93.20	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092...	[more]

BLAST of Cp4.1LG01g07530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49400.1	1.3e-34	70.87	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	1.9e-33	79.52	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	1.4e-09	42.31	ribosomal protein S17	[more]
AT4G30800.1	1.4e-04	39.44	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 52..62 score: 49.27 coord: 20..43 score: 37.58 coord: 62..69 score: 67.5
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 6..73 e-value: 3.4E-32 score: 110.4 coord: 108..175 e-value: 3.4E-32 score: 110.4
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..89 coord: 103..195
None	No IPR available	GENE3D	2.40.50.140		coord: 1..91 e-value: 8.0E-34 score: 117.5
None	No IPR available	GENE3D	2.40.50.140		coord: 92..181 e-value: 1.5E-34 score: 119.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..205
None	No IPR available	PANTHER	PTHR10744:SF1	37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	coord: 1..89
None	No IPR available	PANTHER	PTHR10744:SF1	37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	coord: 103..195
IPR019984	30S ribosomal protein S17	TIGRFAM	TIGR03635	TIGR03635	coord: 2..71 e-value: 2.0E-30 score: 102.6 coord: 104..173 e-value: 2.0E-30 score: 102.6
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 1..76 score: 22.33972
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 103..178 score: 22.33972
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..83
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 103..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g07530.1	Cp4.1LG01g07530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome