Cp4.1LG01g07090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g07090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
LocationCp4.1LG01: 4025803 .. 4029154 (+)
RNA-Seq ExpressionCp4.1LG01g07090
SyntenyCp4.1LG01g07090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGCGCTAATTTTTGCCGAGAATATTATGCACAAAACCGCGCCCTCGCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGGTCAGCTCTCTCTCTCTCTCTCTGATAAATTCTTCTCTATCTTTCCATTTCTCTCCTCCCTCTGTTCTCATCTCTCAATCTCACTCTCAGTTTTGGTTTTATAATTAGTCTTTCTTTCTCTTTTCTTTTAGTTGCATTGTTTCGTCCTTCCTGTTGTTTTTTTCGTGCAGTTTCCCTAGTAGTGTGTTCTTAAACTATTGCATCTGACTGAGGTATTATTACTTGAATGTTTTATGATGAGTACATGTAATCTCTTGTTTGCCTCTTAGGATGAAAATAGTTCAAATTTTCATTTTCTGAGTTTATCAATGCTCTACAATCACTGGAGACCTTGAGTGAAGGGTTAATATTCTCATTCTGTGTTTTCTCGAACAATTTAAGCCTCGACTATAGTTTCTCTGGGACATGATGTTCTTTAGGGCAACTTTGGGCACATTCTGTTTTATGAGATTATGCTGATACGGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCACTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGTATTTTTTTCTTTGGTATTTGCATATTTGTTTATGCGACATCTCAGTCTTCTATTTGTTAATTCTAACATACTAATGCCTTTCATATCCTCCCTCTTTTGTCTTCAATTTCAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTGTGCTTTCGCTTTCAGTACTTTTATCCAATACATGTTGCCAAATGGTTCGACCTTTTTCTTATGCGCAAGTATGTTTGAATCATGTCTTACTCTTGAGTCGTTATAAAAGCCTTTCATTGTATAATATCTTCGGCTCCTGTTCCTTTTCATTGACACAACTCTTTTGAGTTGGATGAAAATTTTATCCTTTGTACTGAAAAATTATGATTTCTCTTTCTAATAATCATGATCCTGTAGACCAGCTAGTTCTTACCTCTGCTAATCCCCTTGAGGCAACTATTGAACTCTCTTTAAATTTATTAAAATTGGATAACATTTTAGCATCGTATTTTTTTTGTCTTTAGTTAAAGGTCAGCTTTATGTCAATTTTTAATTTTACTAAATTCTGCTGATTGAATGATATTTTGATATATTGGGAGTTTGATGCTTGAAAACTTGATATATAATTGATGTTTGGAAGTTATGATTTTTAGTTATCTATGTCAGAAACCCTGTGAAAAGTTCACATGGCTTTTGTTGTTTAGACTAGGAAGGTTGGATATTTGTAATAACTTAAAAAAAAGGAAAAGATCTCATTTTCTATGCCCCTTGGTATTATGTGAATAATGTTGTATTCTTGAGTCATTTATTTATCCATCCCGAGTTTGCTGATGCGCTTTAGTTTTGGTTTAGTGTACAATATCTTGAATTTCTCTAGTAGAGAAATTCCTTGACAGTTGGTCTTCAAAACGGGTTTTTATTTTTTTACTTACTATGTTGGAAATTCCTTGGTAGTTGGTCTTTAAAATGGCGTTTTATTTTTACTTCTTTTTTAAAAATATACTTATTTCTGTAAAATGTGAAATTTCTGCTATCTTTTGGGTGCTATAGTTTGGCTGGCAAGAAACTGTATGATTTTTTAAGACGTGTTTTATACCTTTTGGAGTAAAACTGATGATCTTTAGATTCAGTGCCGTTTTTTCTTTCAACATTGTTTCTATGGTTGATTATTGTGATATTTTTCCCTTCCCATTTGATGATTGTTACCAAGTTACTCTTTCGTAAGCTATTTATAAAATGGCTATATTTATAATTTTTTTAAAAAGTGATAACTACGACATTTTCATGAAGCTCATTTCTTTTGATTTATAAACAAGTGTATTGGCTATATTGCTTTCAAGGAACCTTTTTTTAAATCTTTCCAGGCCCCCNGGGGGGGGGGGGGGGGGGGGGTTATACTGCAAGATCTTTGGACTTCTTCAATTTTGTTCTGTTTATTCTTTTACTTGAAACTTTACTGAAGTGCTCTACTAGAATGTCATTAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGGAATTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTATGCTTTGTTTGTGTGTGTTAAAGAGTTGTGCCTTTTAATTCGCAGGTGAACTGTTTAGGTAAAAACCCTCATGTTTTGGACCCCCTCGACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTCTTGTTGTGTGCTTACTCTTTTCCTTGCTTTGTACTGTAGACTCGTGAGTTACGTATCTCATGTATAATTACTGTGTCTAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGGATAGTCCGCCATCTCATAATATGTTAAGTTTGAATCCTTGAGTTGACTCCATATGCCTGCCGATCTTATTTCTTGTCGTTCTTCCTGTGATAAACATCAAACTTTCAGTTGATAGCCTGACCTTCTGCCAAGTTTGGAGCTATCTTATCAGTTTGTAGTTCATTTTAATTTTTCTTCTTCTGCAAACCATTTCCCAGATACTGCAACTCTAGAAAGTGTATCTGTTTAGATATCAGAGAATATCTAGTAGAAATGCTATATCTGTTTTTAACATGTCTATTGATTAGAGACTTGGAGTGTCTTTGCAACATGGGACATTTATTTGTTCTGATCAGCAAGTAATATTATCATTCAGAACTATGAGGATCTTTTGGGCTAGGTAGGTATGTGCTGTTCCTCGAGTCTTGGTCCTTGTTGCTTCTGTTCATGTGTACACACCAAGGAATCAAATTTCCATTGACGTGTGAATAGTTTTCTGTGTTTATAAATCGAAGGGTTTGACAATCATAGTTGCTTATGCATGTGTGTACATAGCTGTTTTTCGCTCTTCTAGAACATTTTCATATTTCGTTACTGATTTATGAAGTGATTGGAAAGTCTTGATGCATATAAACAAGAAATACTTTTGAAGAAATTTCTCGTCTCCCTGTAGACGAGAAGGAAGGCTATTTTCCTGCTACTTC

mRNA sequence

TTAGGCGCTAATTTTTGCCGAGAATATTATGCACAAAACCGCGCCCTCGCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGACTCACTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTGTGCTTTCGCTTTCAGTACTTTTATCCAATACATGTTGCCAAATGGTTCGACCTTTTTCTTATGCGCAAACTAACAAGAATGAAGAAGAGGAATTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGGATAGTCCGCCATCTCATAATATGTTAAGTTTGAATCCTTGAGTTGACTCCATATGCCTGCCGATCTTATTTCTTGTCGTTCTTCCTGTGATAAACATCAAACTTTCAGTTGATAGCCTGACCTTCTGCCAAGTTTGGAGCTATCTTATCAGTTTGTAGTTCATTTTAATTTTTCTTCTTCTGCAAACCATTTCCCAGATACTGCAACTCTAGAAAGTGTATCTGTTTAGATATCAGAGAATATCTAGTAGAAATGCTATATCTGTTTTTAACATGTCTATTGATTAGAGACTTGGAGTGTCTTTGCAACATGGGACATTTATTTGTTCTGATCAGCAAGTAATATTATCATTCAGAACTATGAGGATCTTTTGGGCTAGGTAGGTATGTGCTGTTCCTCGAGTCTTGGTCCTTGTTGCTTCTGTTCATGTGTACACACCAAGGAATCAAATTTCCATTGACGTGTGAATAGTTTTCTGTGTTTATAAATCGAAGGGTTTGACAATCATAGTTGCTTATGCATGTGTGTACATAGCTGTTTTTCGCTCTTCTAGAACATTTTCATATTTCGTTACTGATTTATGAAGTGATTGGAAAGTCTTGATGCATATAAACAAGAAATACTTTTGAAGAAATTTCTCGTCTCCCTGTAGACGAGAAGGAAGGCTATTTTCCTGCTACTTC

Coding sequence (CDS)

ATGGTTCGACCTTTTTCTTATGCGCAAACTAACAAGAATGAAGAAGAGGAATTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK
Homology
[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-45
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 9   QTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
           +  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 15  ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74

Query: 69  TEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 108
           TEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 75  TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-45
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 9   QTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
           +  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 15  ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74

Query: 69  TEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 108
           TEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 75  TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-45
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 9   QTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
           +  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 15  ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74

Query: 69  TEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 108
           TEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 75  TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-44
Identity = 84/96 (87.50%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 12  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
           + EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 17  RQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEL 76

Query: 72  PKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 108
           P+TGKGKKK +P+NKDRFISKMFLRGDSVI+VLRNP
Sbjct: 77  PRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.2e-41
Identity = 79/94 (84.04%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 14  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 73
           E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK
Sbjct: 20  EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 74  TGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 108
           TGKGKKKA+ + KDRFISKMFLRGDSVI+V++NP
Sbjct: 80  TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of Cp4.1LG01g07090 vs. NCBI nr
Match: XP_019464922.1 (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Lupinus angustifolius])

HSP 1 Score: 202 bits (514), Expect = 3.14e-65
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP      NKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPMEEDAVNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. NCBI nr
Match: XP_042477120.1 (small nuclear ribonucleoprotein Sm D2 isoform X2 [Macadamia integrifolia])

HSP 1 Score: 202 bits (513), Expect = 4.46e-65
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     T KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPMEEDATGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. NCBI nr
Match: XP_022146455.1 (small nuclear ribonucleoprotein Sm D2-like [Momordica charantia] >XP_022146456.1 small nuclear ribonucleoprotein Sm D2-like [Momordica charantia] >XP_022146457.1 small nuclear ribonucleoprotein Sm D2-like [Momordica charantia])

HSP 1 Score: 202 bits (513), Expect = 4.46e-65
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     T KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. NCBI nr
Match: XP_022942850.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201 bits (512), Expect = 6.13e-65
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     TNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPME-EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cp4.1LG01g07090 vs. NCBI nr
Match: XP_022983472.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima])

HSP 1 Score: 201 bits (511), Expect = 8.72e-65
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     TNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPME-EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy TrEMBL
Match: A0A6J1CZE7 (Small nuclear ribonucleoprotein Sm D2 OS=Momordica charantia OX=3673 GN=LOC111015669 PE=3 SV=1)

HSP 1 Score: 202 bits (513), Expect = 2.16e-65
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     T KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy TrEMBL
Match: A0A6J1FX13 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111447757 PE=3 SV=1)

HSP 1 Score: 201 bits (512), Expect = 2.97e-65
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     TNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPME-EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy TrEMBL
Match: A0A6J1IZE4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111482063 PE=3 SV=1)

HSP 1 Score: 201 bits (511), Expect = 4.22e-65
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP     TNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPME-EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy TrEMBL
Match: G7LBH6 (Small nuclear ribonucleoprotein Sm D2 OS=Medicago truncatula OX=3880 GN=11426500 PE=2 SV=1)

HSP 1 Score: 200 bits (508), Expect = 1.25e-64
Identity = 99/108 (91.67%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP       KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPMEEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. ExPASy TrEMBL
Match: A0A1S2YDS1 (Small nuclear ribonucleoprotein Sm D2 OS=Cicer arietinum OX=3827 GN=LOC101515130 PE=3 SV=1)

HSP 1 Score: 200 bits (508), Expect = 1.25e-64
Identity = 99/108 (91.67%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M RP       KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSRPMEEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-50
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M +P       K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 109
           LENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-50
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M +P       K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 109
           LENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. TAIR 10
Match: AT3G62840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-50
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 1   MVRPFSYAQTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           M +P       K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 109
           LENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Cp4.1LG01g07090 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 12  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 72  PKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 109
           PKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of Cp4.1LG01g07090 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 12  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 72  PKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 109
           PKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3SZF84.1e-4585.86Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
P623164.1e-4585.86Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
P623174.1e-4585.86Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
Q9VI101.2e-4487.50Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
Q187866.2e-4184.04Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239... [more]
BLAST of Cp4.1LG01g07090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_019464922.13.14e-6592.59PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Lupinus angustifolius][more]
XP_042477120.14.46e-6592.59small nuclear ribonucleoprotein Sm D2 isoform X2 [Macadamia integrifolia][more]
XP_022146455.14.46e-6592.59small nuclear ribonucleoprotein Sm D2-like [Momordica charantia] >XP_022146456.1... [more]
XP_022942850.16.13e-6594.44small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 ... [more]
XP_022983472.18.72e-6593.52small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima][more]
BLAST of Cp4.1LG01g07090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CZE72.16e-6592.59Small nuclear ribonucleoprotein Sm D2 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A6J1FX132.97e-6594.44Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111447... [more]
A0A6J1IZE44.22e-6593.52Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148206... [more]
G7LBH61.25e-6491.67Small nuclear ribonucleoprotein Sm D2 OS=Medicago truncatula OX=3880 GN=11426500... [more]
A0A1S2YDS11.25e-6491.67Small nuclear ribonucleoprotein Sm D2 OS=Cicer arietinum OX=3827 GN=LOC101515130... [more]
BLAST of Cp4.1LG01g07090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47640.25.7e-5087.04Small nuclear ribonucleoprotein family protein [more]
AT2G47640.35.7e-5087.04Small nuclear ribonucleoprotein family protein [more]
AT3G62840.25.7e-5087.04Small nuclear ribonucleoprotein family protein [more]
AT2G47640.14.8e-4994.85Small nuclear ribonucleoprotein family protein [more]
AT2G47640.44.8e-4994.85Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 26..105
e-value: 5.9E-20
score: 82.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 29..103
e-value: 6.3E-19
score: 67.4
NoneNo IPR availableGENE3D2.30.30.100coord: 16..108
e-value: 2.3E-41
score: 141.5
NoneNo IPR availablePANTHERPTHR12777:SF6SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..108
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..108
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 18..107
e-value: 9.54587E-62
score: 180.99
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 21..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07090.1Cp4.1LG01g07090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0008380 RNA splicing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0030532 small nuclear ribonucleoprotein complex