Cp4.1LG01g06900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g06900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	dehydrin DHN1-like
Location	Cp4.1LG01: 3988184 .. 3989111 (+)
RNA-Seq Expression	Cp4.1LG01g06900
Synteny	Cp4.1LG01g06900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACATCCACATTCTGAAACTCGCTGAATTATTTGTTCGTTCATCCATCCATCCATCTCTGTTTTGTTTTTTGGGTTTTGAAAAATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCACGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCAATTCGGCGGGGCGGTGAGTACGGTGACCGGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCACCAGCAGCATAAAGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGGTAAAATTTAATGTTATATGATTACTTTCATACATTAGTGTATAATAATAATAATAATAATAATAATAATAATGAGGTTGAAATTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCAGGACATCATGACACGGCGCAGCAGCCACACGCGACATCAACCACTACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCTGGACATAACTGAGAGGCGTCGCCCACCATATGTGGGTGTAGATATGATATTAATAAAGTGTTAGATGTGCGTGTATTGGGACTTTGTGTAGTGTAAGTGTTGGTATGGCTAAATAACGAGGGAGCGTGGTGGTCGGTTTGTGGTTGTGTGTATTATTATGTCATTTATGGGTTTGATGTATGTACGTCTCGTTTGTGTTCATCTCATCTATCTTCTACTTGGGCTGTTTTACGCTTCAA

mRNA sequence

CAACATCCACATTCTGAAACTCGCTGAATTATTTGTTCGTTCATCCATCCATCCATCTCTGTTTTGTTTTTTGGGTTTTGAAAAATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCACGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCAATTCGGCGGGGCGGTGAGTACGGTGACCGGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCACCAGCAGCATAAAGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCAGGACATCATGACACGGCGCAGCAGCCACACGCGACATCAACCACTACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCTGGACATAACTGAGAGGCGTCGCCCACCATATGTGGGTGTAGATATGATATTAATAAAGTGTTAGATGTGCGTGTATTGGGACTTTGTGTAGTGTAAGTGTTGGTATGGCTAAATAACGAGGGAGCGTGGTGGTCGGTTTGTGGTTGTGTGTATTATTATGTCATTTATGGGTTTGATGTATGTACGTCTCGTTTGTGTTCATCTCATCTATCTTCTACTTGGGCTGTTTTACGCTTCAA

Coding sequence (CDS)

ATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCACGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCAATTCGGCGGGGCGGTGAGTACGGTGACCGGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCACCAGCAGCATAAAGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCAGGACATCATGACACGGCGCAGCAGCCACACGCGACATCAACCACTACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCTGGACATAACTGA

Protein sequence

MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEYGDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN

Homology

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 96/179 (53.63%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEYGDRIGT 67
           TD+YGNP++Q  DEYGN + G G      + TGG G       YG   +  G  G   GT
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGG------YGTGGGGGATGGQGYGTGGQGYGSGGQGYGT 72

Query: 68  GGT-YETG-GHGGVGYGGG--HH---QQHKEH----GGVLRRSGSSSSSSSSEDDGHGGR 127
           GG  Y TG G  G G GGG  HH   Q HKE     GG+L RSG S SSSSSEDDG GGR
Sbjct: 73  GGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG-SGSSSSSEDDGQGGR 132

Query: 128 RKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQ-HEKKGIMDKIKEKLPG 174
           RKKG+ +KIKEKLPGHHD + Q  A       GY +  +GG+ HEKKG+MDKIKEKLPG
Sbjct: 133 RKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 183

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy Swiss-Prot
Match: A8CVF3 (Dehydrin DHN1 OS=Avicennia marina OX=82927 GN=DHN1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-22
Identity = 93/185 (50.27%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 8   TDQYGNPVRQTDEYG-------NVIHGT-----GQHVDPHHRTGGTGEFRETDQYGNPIR 67
           TD+YGNP+RQT E+G       N  +GT     G   D    T  TG  ++TDQYG P  
Sbjct: 12  TDEYGNPIRQTGEFGATGAYGANQQYGTTGTTVGYGTDQCVTTVTTGA-QKTDQYGTPGT 71

Query: 68  RGGEYGDRIGTGGTY-ETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGG 127
            G    D+ GT GT  E G HGG G   G        GG   R   SS SSSSEDDG GG
Sbjct: 72  TGAYGTDQYGTTGTTGEYGTHGG-GIAPGATDAGLAGGGGGHRRLGSSGSSSSEDDGQGG 131

Query: 128 RRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGG------QHEKKGIMDKIK 174
           RRKKG+KEKIKEKLPG      Q H T   + GGY   EHGG        EKKGIMDKIK
Sbjct: 132 RRKKGIKEKIKEKLPGGGHGDDQTHPTPPGS-GGY-GYEHGGAAESPEHEEKKGIMDKIK 191

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy Swiss-Prot
Match: P12950 (Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-22
Identity = 86/162 (53.09%), Postives = 94/162 (58.02%), Query Frame = 0


Query: 40  GTGEFRETDQYGNPIR--RGGEYGDRIG---TGGTYETGGHGGVGYGGGHHQQHKEH--- 99
           G G     DQYGNP+     G  G R G   TGG  + G HGG G GGG  Q  +E    
Sbjct: 10  GHGRTGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGEHGGAGMGGGQFQPAREEHKT 69

Query: 100 GGVLRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPHATSTT------- 159
           GG+L RSG SSSSSSSEDDG GGRRKKG+KEKIKEKLPG H   Q  HAT+TT       
Sbjct: 70  GGILHRSG-SSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDDQ--HATATTGGAYGQQ 129

Query: 160 --TPGGYSSVEH-GGQH--------EKKGIMDKIKEKLPGHN 176
             T   Y    H GG +        EKKGIMDKIKEKLPG +
Sbjct: 130 GHTGSAYGQQGHTGGAYATGTEGTGEKKGIMDKIKEKLPGQH 168

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy Swiss-Prot
Match: Q2R4Z5 (Dehydrin Rab16B OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16B PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-21
Identity = 79/165 (47.88%), Postives = 90/165 (54.55%), Query Frame = 0


Query: 32  VDPHHRTGGTGEFRETDQYGNPIRRGGEYGDRIGTGGTYET---GGHGGVGYGGGHHQQH 91
           +D +    G G  R  D YGNP+  G   G     GG +     GGH G G GG      
Sbjct: 1   MDNYQGQHGYGADR-VDVYGNPVGAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAR 60

Query: 92  KEH--GGVLRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPG-----HHDT------- 151
           ++H  GG+L RSGSSSSSSSSEDDG GGRRKKG+KEKIKEKLPG     +H         
Sbjct: 61  EDHKTGGILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNHQQQQMMGNT 120

Query: 152 ----AQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 176
                QQ HA  T    G    E+G   EKKG MDKIKEKLPG +
Sbjct: 121 GGAYGQQGHAGMTGAGTGVHGAEYGNAGEKKGFMDKIKEKLPGQH 164

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy Swiss-Prot
Match: P22239 (Desiccation-related protein clone PCC6-19 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.8e-21
Identity = 89/176 (50.57%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 5   QSGTDQYGNPVRQTDEYGNVI-HGTGQHVDPHHRTGG-TGEFRETDQYGNP-IRRGGEYG 64
           Q G ++YG   R TDEYGN I  G G      HR GG  G  ++  Q+G   +   G  G
Sbjct: 3   QFGGEKYGG--RHTDEYGNPIQQGAGA-----HRGGGIMGGGQQAGQHGTTGVLGHGTAG 62

Query: 65  DRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLK 124
               TGG     GHG  G GG    QH       RRSGSSSSSSSSE DG GGRRKKG+K
Sbjct: 63  QHGTTGGGL---GHGTAGTGGALGGQH-------RRSGSSSSSSSSESDGEGGRRKKGMK 122

Query: 125 EKIKEKLPGHHDTA--QQPHATSTTTPGGYSSVEHG--GQHEKKGIMDKIKEKLPG 174
           +K+KEKLPG H T   QQ + T+ T         HG   QHEKKGIMDKIKEKLPG
Sbjct: 123 DKMKEKLPGGHGTTTDQQQYGTAAT---------HGQAQQHEKKGIMDKIKEKLPG 152

[Close]

BLAST of Cp4.1LG01g06900 vs. NCBI nr
Match: XP_023550338.1 (dehydrin Rab18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353 bits (906), Expect = 7.71e-123
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60

Query: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120
           GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL
Sbjct: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175
           KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN
Sbjct: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175

[Close]

BLAST of Cp4.1LG01g06900 vs. NCBI nr
Match: XP_022942609.1 (dehydrin Rab16B-like [Cucurbita moschata])

HSP 1 Score: 333 bits (853), Expect = 8.39e-115
Identity = 168/175 (96.00%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQ VDPHHRTG   EFRETDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTG---EFRETDQYGNPVRRGGEY 60

Query: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120
           GD IGTGGTYETGGHGGVGYGGGH QQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL
Sbjct: 61  GDPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175
           KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN
Sbjct: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of Cp4.1LG01g06900 vs. NCBI nr
Match: XP_022983036.1 (dehydrin DHN1-like [Cucurbita maxima])

HSP 1 Score: 327 bits (839), Expect = 1.14e-112
Identity = 164/175 (93.71%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG   EFR+TDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG---EFRDTDQYGNPVRRGGEY 60

Query: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120
           G+ IGTGGTYETGGHGGVGYGGGH QQHKEHGG+LRRSGSSSSSSSSEDDGHGGRRKKGL
Sbjct: 61  GEPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175
           KEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLPGHN
Sbjct: 121 KEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of Cp4.1LG01g06900 vs. NCBI nr
Match: KAG6600589.1 (Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031229.1 Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324 bits (831), Expect = 2.79e-111
Identity = 168/186 (90.32%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG   EFRETDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG---EFRETDQYGNPVRRGGEY 60

Query: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQH-----------KEHGGVLRRSGSSSSSSSSED 120
           GD IGTGGTYETGGHGGVGYGGGH QQH           KEHGGVLRRSGSSSSSSSSED
Sbjct: 61  GDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSED 120

Query: 121 DGHGGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 175
           DGHGGRRKKGLKEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQHEKKGIMDKIKE
Sbjct: 121 DGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 180

[Close]

BLAST of Cp4.1LG01g06900 vs. NCBI nr
Match: XP_038902571.1 (dehydrin Xero 1-like [Benincasa hispida])

HSP 1 Score: 250 bits (639), Expect = 3.32e-82
Identity = 135/178 (75.84%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           M+H+QSGTDQYGNP+RQTDEYGNVI  T Q+ DP  RTG   EFRETDQYGNP+ R  E+
Sbjct: 1   MAHYQSGTDQYGNPIRQTDEYGNVISDTAQYGDPLRRTG---EFRETDQYGNPVHRTDEF 60

Query: 61  GDRI--GTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRR-K 120
           G+ I  GTGGTYETGG+GG GYGG HHQQHKEHGG+L RSGSSSSSSS EDDGHGGRR K
Sbjct: 61  GNPISTGTGGTYETGGYGGTGYGGEHHQQHKEHGGILHRSGSSSSSSS-EDDGHGGRRRK 120

Query: 121 KGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175
           KGLKEK+KEK+PGHH    +P A STTTPGGYSS ++GGQHEKKGIM+KIKEKLPGH+
Sbjct: 121 KGLKEKVKEKMPGHH---HEPQAMSTTTPGGYSSAQYGGQHEKKGIMEKIKEKLPGHH 171

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy TrEMBL
Match: A0A6J1FRT8 (dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1)

HSP 1 Score: 333 bits (853), Expect = 4.06e-115
Identity = 168/175 (96.00%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQ VDPHHRTG   EFRETDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTG---EFRETDQYGNPVRRGGEY 60

Query: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120
           GD IGTGGTYETGGHGGVGYGGGH QQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL
Sbjct: 61  GDPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175
           KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN
Sbjct: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy TrEMBL
Match: A0A6J1J0Z6 (dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1)

HSP 1 Score: 327 bits (839), Expect = 5.54e-113
Identity = 164/175 (93.71%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG   EFR+TDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG---EFRDTDQYGNPVRRGGEY 60

Query: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120
           G+ IGTGGTYETGGHGGVGYGGGH QQHKEHGG+LRRSGSSSSSSSSEDDGHGGRRKKGL
Sbjct: 61  GEPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175
           KEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLPGHN
Sbjct: 121 KEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy TrEMBL
Match: A0A5D3CYN8 (Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 PE=3 SV=1)

HSP 1 Score: 246 bits (627), Expect = 1.32e-80
Identity = 136/183 (74.32%), Postives = 149/183 (81.42%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGE 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTG   EFRETDQYGNP+RR  +
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTG---EFRETDQYGNPVRRTDD 60

Query: 61  Y-------GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
                   G  +GTGGTYET G+GG GYGGGHHQQHKEHGG+L RSGSSSSSSS EDDGH
Sbjct: 61  VFGNPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSS-EDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 175
           GGRRKKGLKEK+KEKLPG H    Q  A STTTPGGY+S EHGGQHEKKGIM+KIKEKLP
Sbjct: 121 GGRRKKGLKEKVKEKLPGRHHHEGQ--AVSTTTPGGYASAEHGGQHEKKGIMEKIKEKLP 177

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy TrEMBL
Match: A0A1S3BTX2 (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 246 bits (627), Expect = 1.32e-80
Identity = 136/183 (74.32%), Postives = 149/183 (81.42%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGE 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTG   EFRETDQYGNP+RR  +
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTG---EFRETDQYGNPVRRTDD 60

Query: 61  Y-------GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
                   G  +GTGGTYET G+GG GYGGGHHQQHKEHGG+L RSGSSSSSSS EDDGH
Sbjct: 61  VFGNPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSS-EDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 175
           GGRRKKGLKEK+KEKLPG H    Q  A STTTPGGY+S EHGGQHEKKGIM+KIKEKLP
Sbjct: 121 GGRRKKGLKEKVKEKLPGRHHHEGQ--AVSTTTPGGYASAEHGGQHEKKGIMEKIKEKLP 177

[Close]

BLAST of Cp4.1LG01g06900 vs. ExPASy TrEMBL
Match: A0A0A0KWM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 244 bits (623), Expect = 5.37e-80
Identity = 136/183 (74.32%), Postives = 150/183 (81.97%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGE 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTG   EFRETDQYGNP RR  +
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTG---EFRETDQYGNPGRRTDD 60

Query: 61  Y-------GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
                   G  +GTGGTYET G+GG GYGGGHHQQHKEHGG+L RSGSSSSSSS EDDGH
Sbjct: 61  VFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSS-EDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 175
           GGRRKKGLKEK+KEKLPGHH   +Q  A STTTPGGY+S E+GGQHEKKGIM+KIKEKLP
Sbjct: 121 GGRRKKGLKEKVKEKLPGHHRHEEQ--AVSTTTPGGYTSAEYGGQHEKKGIMEKIKEKLP 177

[Close]

BLAST of Cp4.1LG01g06900 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein )

HSP 1 Score: 121.3 bits (303), Expect = 7.6e-28
Identity = 96/179 (53.63%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEYGDRIGT 67
           TD+YGNP++Q  DEYGN + G G      + TGG G       YG   +  G  G   GT
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGG------YGTGGGGGATGGQGYGTGGQGYGSGGQGYGT 72

Query: 68  GGT-YETG-GHGGVGYGGG--HH---QQHKEH----GGVLRRSGSSSSSSSSEDDGHGGR 127
           GG  Y TG G  G G GGG  HH   Q HKE     GG+L RSG S SSSSSEDDG GGR
Sbjct: 73  GGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG-SGSSSSSEDDGQGGR 132

Query: 128 RKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQ-HEKKGIMDKIKEKLPG 174
           RKKG+ +KIKEKLPGHHD + Q  A       GY +  +GG+ HEKKG+MDKIKEKLPG
Sbjct: 133 RKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 183

[Close]

BLAST of Cp4.1LG01g06900 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-27
Identity = 95/179 (53.07%), Postives = 109/179 (60.89%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEYGDRIGT 67
           TD+YGNP++Q  DEYGN + G G      + TGG G       YG   +  G  G   GT
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGG------YGTGGGGGATGGQGYGTGGQGYGSGGQGYGT 72

Query: 68  GGT-YETG-GHGGVGYGGG--HH---QQHKEH----GGVLRRSGSSSSSSSSEDDGHGGR 127
           GG  Y TG G  G G GGG  HH   Q HKE     GG+L RSGS SSSSS  DDG GGR
Sbjct: 73  GGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSSSS--DDGQGGR 132

Query: 128 RKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQ-HEKKGIMDKIKEKLPG 174
           RKKG+ +KIKEKLPGHHD + Q  A       GY +  +GG+ HEKKG+MDKIKEKLPG
Sbjct: 133 RKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 182

[Close]

BLAST of Cp4.1LG01g06900 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-18
Identity = 82/175 (46.86%), Postives = 99/175 (56.57%), Query Frame = 0


Query: 8   TDQYGNP-VRQTDEYGNVIHGTG-QHVDPHHRTGGTGEFRE--TDQYG--NPIRRGGEYG 67
           TD  GNP V  TDE+GN ++ TG     P H+   T +  E  T   G  +P       G
Sbjct: 15  TDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTSTVGETHPAAAPAGAG 74

Query: 68  DRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLK 127
                  T  + G G    G  HH   +EH   LRRSG SSSSSSSEDDG GGRRKK +K
Sbjct: 75  AATAATATGVSAGTGATTTGQQHHGSLEEH---LRRSG-SSSSSSSEDDGQGGRRKKSIK 134

Query: 128 EKIKEKL-PGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 176
           EKIKEK   G H   Q P AT+TTT  G ++ +    HEKKGI++KIK+KLPGH+
Sbjct: 135 EKIKEKFGSGKHKDEQTP-ATATTT--GPATTDQ--PHEKKGILEKIKDKLPGHH 180

[Close]

BLAST of Cp4.1LG01g06900 vs. TAIR 10
Match: AT3G50980.1 (dehydrin xero 1 )

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-17
Identity = 70/141 (49.65%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 36  HRTGGTGEFRETDQYGNPIRRGGEYGDRIGTGGTYET-GGHGGVGYGGGHHQQHKEHGGV 95
           +++G     ++ DQ+GNP            T G Y T GG   V  GGG         G+
Sbjct: 6   NQSGAQQTHQQLDQFGNPFP---------ATTGAYGTAGGAPAVAEGGG-------LSGM 65

Query: 96  LRRSGSSSSSSSSEDDGHGGRR--KKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSV 155
           L RSG SSSSSSSEDDG GGRR  KKG+ EKIKEKLPGHHD+ +     STTT     +V
Sbjct: 66  LHRSG-SSSSSSSEDDGLGGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTTAYDTGTV 125

Query: 156 EHGGQHEKKGIMDKIKEKLPG 174
                HEKKG+M+KIKEKLPG
Sbjct: 126 ----HHEKKGMMEKIKEKLPG 125

[Close]

BLAST of Cp4.1LG01g06900 vs. TAIR 10
Match: AT1G20440.1 (cold-regulated 47 )

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-12
Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 95  LRRSGSSSSSSSSEDDG----------HGGRRKKGLKEKIKEKLPGHHD-TAQQ--PHAT 154
           L RS SSSSSSS E+             G   KKGL EKIKEKLPGHHD TA+   P +T
Sbjct: 104 LHRSNSSSSSSSDEEGEEKKEKKKKIVEGEEDKKGLVEKIKEKLPGHHDKTAEDDVPVST 163

Query: 155 STTTPGGYSSVEHG-GQHEKKGIMDKIKEKLPGHN 176
           +   P   S VEH   + EKKG+++KIKEKLPGH+
Sbjct: 164 TIPVPVSESVVEHDHPEEEKKGLVEKIKEKLPGHH 198

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g06900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30185	1.1e-26	53.63	Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1	[more]
A8CVF3	3.6e-22	50.27	Dehydrin DHN1 OS=Avicennia marina OX=82927 GN=DHN1 PE=1 SV=1	[more]
P12950	4.7e-22	53.09	Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2	[more]
Q2R4Z5	5.2e-21	47.88	Dehydrin Rab16B OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16B PE=2 SV=1	[more]
P22239	8.8e-21	50.57	Desiccation-related protein clone PCC6-19 OS=Craterostigma plantagineum OX=4153 ...	[more]

BLAST of Cp4.1LG01g06900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550338.1	7.71e-123	100.00	dehydrin Rab18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942609.1	8.39e-115	96.00	dehydrin Rab16B-like [Cucurbita moschata]	[more]
XP_022983036.1	1.14e-112	93.71	dehydrin DHN1-like [Cucurbita maxima]	[more]
KAG6600589.1	2.79e-111	90.32	Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031229.1 D...	[more]
XP_038902571.1	3.32e-82	75.84	dehydrin Xero 1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g06900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRT8	4.06e-115	96.00	dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1	[more]
A0A6J1J0Z6	5.54e-113	93.71	dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1	[more]
A0A5D3CYN8	1.32e-80	74.32	Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 ...	[more]
A0A1S3BTX2	1.32e-80	74.32	dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1	[more]
A0A0A0KWM9	5.37e-80	74.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g06900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66400.1	7.6e-28	53.63	Dehydrin family protein	[more]
AT5G66400.2	3.8e-27	53.07	Dehydrin family protein	[more]
AT2G21490.1	3.2e-18	46.86	dehydrin LEA	[more]
AT3G50980.1	3.5e-17	49.65	dehydrin xero 1	[more]
AT1G20440.1	4.5e-12	52.63	cold-regulated 47	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 8..174 e-value: 7.0E-41 score: 140.4
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 6..33
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 42..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..133
None	No IPR available	PANTHER	PTHR33346:SF29	DEHYDRIN RAB18	coord: 42..174
None	No IPR available	PANTHER	PTHR33346:SF29	DEHYDRIN RAB18	coord: 6..33
IPR030513	Dehydrin, conserved site	PROSITE	PS00315	DEHYDRIN_1	coord: 103..118
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 166..173
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 123..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g06900.1	Cp4.1LG01g06900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009415	response to water
cellular_component	GO:0005829	cytosol