Cp4.1LG01g06640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g06640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Sm domain-containing protein
Location	Cp4.1LG01: 45696 .. 48748 (+)
RNA-Seq Expression	Cp4.1LG01g06640
Synteny	Cp4.1LG01g06640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAACGAAGCTTAAGATATCACTGTCCGTTAAAATTTTACATAATAAAACTCAAATCACAAAAGATCCAAATGTTACTTTCAGCAATTATAAATAAAATATGAAAGGAAAGACAAACAATACTTTTGCCCTAATCTTCGTCCTTTTGTTTTTGTTTCTCTTAGACAGTCCCTCGTACCGTGACGCTCTCTCTGTTTTTCTCTTCCTCATCCACCTTCGCAGCCAGCAGTTGAGAGGGATATCCACACCAGGTCTTCCGTTTTCTCGTATCCATATCTTTTGATATTATATCGTTTCTTTATCTTTCTTTTACTTTCCGTTTCTTCGTCTTCTGATTTTTTTGGTTCAAATTTCTCAACTGCTGTGATTTGGGAAGACTGACAGCGTTTTTTGGTTCGTTTTGGCTCACCAAAAACTTACGGAAATGAAATTTTTAAAAAAACTACATTAAACAAAAGGAATTTGTTTCTGTTTGGTTTAGTTTGGACTATTAATTTTGTATCCTTATGCCCTTAGTCTACGATGCTTATAAATGGCTGTTCATATTCATATTTGCTTTAGATTTAAGAAATCCACAATGTACTTGAATCTTTTTCAATTTCTAGCTTTTACATAATGTTTCCTTTGTGAATCCTCATTATTGTTTAGACGTTCATTACCTCAATGGATTCTCAATTTCATTTTTGAGACATGCAGATTTTTCTGTTTGAGCCCTTGTTCCTTTTAACTATGGGGGTGTGTCATAGTTCATTTGAAATATATATTTAGTGGCTGTTAAATGAAAATTGCACATAAGTTCTTCTATGTTCGGTGATGGTCCTGAATAAATTTGACTACTTATATCTGATTAGCTATAACAAGTTGGTTGTGCAGATAGAAGAAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCATCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATGTTTGCTTCTACTTTTCTTTTCCCCTGGATAAGTCTCCACATGTTCAATCTTGTTTCATTTCTATTCCCAGAATTGTATTACTAAGAATCTGATAGATGATGTAAAAAATTACCTGCAAATGTTGATGCACTATCCTTATTTTTTTTCTTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCACGTATTTTCTTTGGCGTCATTTTTCATATATTTTTTTCTCTCTACATAATCGCTTTTATTATGACATTACTTGAACATGATATATTCTATAGGTTGATTTTTGTTCTTGCGTTCATATAATCTCTCCTTCAATTCCTTGTCCTTCAAACATGTCTCGTTTGTGAAAAATGTTTTCTTCTTTTTAAATTTTAGAAAATCAAGCTTTTAGGGGGAAGAAANAAAAAAAAAAAAAAAAAAAAGTGCCCAAAAAGCAGAGCCCAAGAAAAATGCTGACCCTATCACAGGATAAAAGGGGCTCCAAGAGAATATCTGCAAAATGAAATATATGCTTAGGGATTGGCATTAAACTTTGTCAAGAGCCCACAGATCTTCCCATGACCTCTCGATCCTTCTAGAAATTCTCGTGTTCATTTCCATTCAAGTAGCAAAAGAAACTAGTCTACCATAGGGTACGACCCTTATCTTGAAAAGATGGATGGAATAAGACTTCCACCTCGAGGCAACAATAACTATTACGAGTTGGGCACACATCAAAAGTCTCCAAAAAAGAGTTCCAAATTGAGATAGCTAACCTCAATCCCAAAGAATATGACCCATGTGCTCAAACACCTCAATTGTGGCTTAAGCACAAAGGATGTGTATATCTAGATGCGGTTAGCGTTTTCCATGCAAAATCTGCCAGGCAAAGAGCTTGACCTTGCTGGGGACTTTTTCCTTCCGTAACAACGAAAAGATAGGATTGAGGAGTGTTGTGGGAATGTAACCAAAAGCAAATATCTCTATGGGTGAAGTTGGTCTCTTCTCAATAGAGGAAGTAGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTGATATCGAATGCTAAAGTTAAATGAATTGAATTACCTGCCCAAGAAATGACTAAAGTCAAAGAGGAAAGTATGTACAAAGGAGGAAACAAGTTATGAAAGGGTTTATCACCCACCAAGTGGTCCTCCCAGACATAGGTCTTTGAACCATTCCTGGCAGTGATTAATGAAGTTGGAAAAAAGGGACCTAAAGACATGGCTTTCCAAGGGTTTCGGAAAGAAGGGATGTGCTATACCTGTTCACTTAAAGTATTCAGCTCCAAAGCAAAACACCACAATAATTTAGCCGAAGAGCTTCATTGCAAATCCTCAAATTGCCAACACCTATCCCTCGAAACTCAATAGGTCTCCTAACCCTCTCCCAACCAACCAAATGTGAACTATCCCCTTGGCCAACACCCTCCCACATTAACCGCAAATGTTGTTTTGATTTTAAACATGACCATTTATAGACCTTTGTATTTTTGTCTTATCTCGTGCAGTATAACTGATGAAAAACAGATGTTATCTATTTTGAATTCTGATGAGAAGATCCCATTATACTTTTCATTGTATAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATACGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGGTAAATATCAAAATAATATCTGTGATGATATTATTGATGTTTTGAGATCAATATGAACATCAATTTCTTAATGCAGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG

mRNA sequence

AGTAACGAAGCTTAAGATATCACTGTCCGTTAAAATTTTACATAATAAAACTCAAATCACAAAAGATCCAAATGTTACTTTCAGCAATTATAAATAAAATATGAAAGGAAAGACAAACAATACTTTTGCCCTAATCTTCGTCCTTTTGTTTTTGTTTCTCTTAGACAGTCCCTCGTACCGTGACGCTCTCTCTGTTTTTCTCTTCCTCATCCACCTTCGCAGCCAGCAGTTGAGAGGGATATCCACACCAGATAGAAGAAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCATCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATACGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG

Coding sequence (CDS)

ATGAAAGGAAAGACAAACAATACTTTTGCCCTAATCTTCGTCCTTTTGTTTTTGTTTCTCTTAGACAGTCCCTCGTACCGTGACGCTCTCTCTGTTTTTCTCTTCCTCATCCACCTTCGCAGCCAGCAGTTGAGAGGGATATCCACACCAGATAGAAGAAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCATCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATACGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG

Protein sequence

MKGKTNNTFALIFVLLFLFLLDSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

Homology

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy Swiss-Prot
Match: O22823 (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.9e-38
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MS  GEK S +TKTPADFLKSIRG PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1   MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 148
           GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61  GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy Swiss-Prot
Match: Q9M1Z3 (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-36
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 62  EKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 121
           EK S +TKTPADFLKSIRG PVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6   EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 122 KYGDAFIRGNNVLYISTSKRTLAEGS 148
           KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66  KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy Swiss-Prot
Match: P62312 (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-32
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 65  SASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 124
           S   +TP+DFLK I G PVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2   SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 125 DAFIRGNNVLYISTSKRTL 144
           DAFIRGNNVLYIST KR +
Sbjct: 62  DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy Swiss-Prot
Match: P62313 (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-32
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 65  SASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 124
           S   +TP+DFLK I G PVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2   SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 125 DAFIRGNNVLYISTSKRTL 144
           DAFIRGNNVLYIST KR +
Sbjct: 62  DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy Swiss-Prot
Match: A8NHT8 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=LSM6 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 68  TKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 127
           T +P DFLK + G  VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAF
Sbjct: 21  TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80

Query: 128 IRGNNVLYISTSK 141
           IRGNNVLYIS  +
Sbjct: 81  IRGNNVLYISADE 93

[Close]

BLAST of Cp4.1LG01g06640 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254 bits (650), Expect = 3.70e-84
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 22  DSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 81
           DSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH
Sbjct: 58  DSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 117

Query: 82  PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 141
           PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR
Sbjct: 118 PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 177

Query: 142 TLAEGSS 148
           TLAEGSS
Sbjct: 178 TLAEGSS 184

[Close]

BLAST of Cp4.1LG01g06640 vs. NCBI nr
Match: KAG6599859.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (641), Expect = 8.69e-83
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 22  DSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 81
           DSPSYR ALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH
Sbjct: 58  DSPSYRYALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 117

Query: 82  PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 141
           PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR
Sbjct: 118 PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 177

Query: 142 TLAEGSS 148
           TLAEGSS
Sbjct: 178 TLAEGSS 184

[Close]

BLAST of Cp4.1LG01g06640 vs. NCBI nr
Match: XP_022988243.1 (uncharacterized protein LOC111485552 [Cucurbita maxima])

HSP 1 Score: 247 bits (630), Expect = 4.12e-81
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 22  DSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 81
           D PSYR A SVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH
Sbjct: 58  DCPSYRYARSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 117

Query: 82  PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 141
           PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR
Sbjct: 118 PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 177

Query: 142 TLAEGSS 148
           TLAEGSS
Sbjct: 178 TLAEGSS 184

[Close]

BLAST of Cp4.1LG01g06640 vs. NCBI nr
Match: XP_022942160.1 (sm-like protein LSM36B isoform X1 [Cucurbita moschata])

HSP 1 Score: 186 bits (471), Expect = 3.40e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 148
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cp4.1LG01g06640 vs. NCBI nr
Match: XP_004140401.1 (sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like protein LSM36B [Cucumis melo] >XP_011655091.1 sm-like protein LSM36B [Cucumis sativus] >XP_022155112.1 sm-like protein LSM36B [Momordica charantia] >XP_031742218.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742219.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742220.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742221.1 sm-like protein LSM36B [Cucumis sativus] >XP_038877209.1 sm-like protein LSM36B [Benincasa hispida] >XP_038877210.1 sm-like protein LSM36B [Benincasa hispida] >KGN50806.1 hypothetical protein Csa_018833 [Cucumis sativus])

HSP 1 Score: 182 bits (463), Expect = 5.63e-57
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 148
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy TrEMBL
Match: A0A6J1JLP5 (uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552 PE=4 SV=1)

HSP 1 Score: 247 bits (630), Expect = 1.99e-81
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 22  DSPSYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 81
           D PSYR A SVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH
Sbjct: 58  DCPSYRYARSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGH 117

Query: 82  PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 141
           PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR
Sbjct: 118 PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 177

Query: 142 TLAEGSS 148
           TLAEGSS
Sbjct: 178 TLAEGSS 184

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy TrEMBL
Match: A0A6J1FVQ8 (sm-like protein LSM36B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447304 PE=3 SV=1)

HSP 1 Score: 186 bits (471), Expect = 1.65e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 148
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy TrEMBL
Match: A0A0A0KSS9 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.72e-57
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 148
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy TrEMBL
Match: A0A6J1DNH0 (sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.72e-57
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 148
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cp4.1LG01g06640 vs. ExPASy TrEMBL
Match: A0A1S3CBJ6 (sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.72e-57
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 148
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cp4.1LG01g06640 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-39
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MS  GEK S +TKTPADFLKSIRG PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1   MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 148
           GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61  GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cp4.1LG01g06640 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-39
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 57  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 116
           MS  GEK S +TKTPADFLKSIRG PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1   MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 117 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 148
           GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61  GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cp4.1LG01g06640 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 62  EKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 121
           EK S +TKTPADFLKSIRG PVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6   EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 122 KYGDAFIRGNNVLYISTSKRTLAEGS 148
           KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66  KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Cp4.1LG01g06640 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 71  PADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 130
           P  FL ++ G  V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 8   PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67

Query: 131 NNVLYI 137
           NNVLY+
Sbjct: 68  NNVLYV 73

[Close]

BLAST of Cp4.1LG01g06640 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 71  PADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 130
           P  FL ++ G  V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16  PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 131 NNVLYI 137
           NNVLY+
Sbjct: 76  NNVLYV 81

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g06640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22823	3.9e-38	84.62	Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1	[more]
Q9M1Z3	1.6e-36	86.05	Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1	[more]
P62312	1.9e-32	83.54	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV...	[more]
P62313	1.9e-32	83.54	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 S...	[more]
A8NHT8	1.1e-24	73.97	U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-...	[more]

BLAST of Cp4.1LG01g06640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539899.1	3.70e-84	100.00	uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]	[more]
KAG6599859.1	8.69e-83	99.21	Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022988243.1	4.12e-81	97.64	uncharacterized protein LOC111485552 [Cucurbita maxima]	[more]
XP_022942160.1	3.40e-58	100.00	sm-like protein LSM36B isoform X1 [Cucurbita moschata]	[more]
XP_004140401.1	5.63e-57	98.91	sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like prot...	[more]

BLAST of Cp4.1LG01g06640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLP5	1.99e-81	97.64	uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552...	[more]
A0A6J1FVQ8	1.65e-58	100.00	sm-like protein LSM36B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447304 ...	[more]
A0A0A0KSS9	2.72e-57	98.91	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=...	[more]
A0A6J1DNH0	2.72e-57	98.91	sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1	[more]
A0A1S3CBJ6	2.72e-57	98.91	sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g06640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43810.1	2.8e-39	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.2	2.8e-39	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	1.2e-37	86.05	Small nuclear ribonucleoprotein family protein	[more]
AT4G30220.1	5.3e-14	48.48	small nuclear ribonucleoprotein F	[more]
AT4G30220.2	5.3e-14	48.48	small nuclear ribonucleoprotein F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 73..138 e-value: 2.8E-21 score: 86.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 73..137 e-value: 2.5E-18 score: 65.5
None	No IPR available	GENE3D	2.30.30.100		coord: 61..141 e-value: 5.8E-31 score: 107.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..68
None	No IPR available	PANTHER	PTHR11021:SF8	SM-LIKE PROTEIN LSM36B-RELATED	coord: 57..146
None	No IPR available	CDD	cd01726	LSm6	coord: 70..137 e-value: 1.7686E-44 score: 138.423
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 57..146
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 71..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g06640.1	Cp4.1LG01g06640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000932	P-body
cellular_component	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding