Cp4.1LG01g05890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g05890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	WRKY transcription factor 55
Location	Cp4.1LG01: 484071 .. 484370 (-)
RNA-Seq Expression	Cp4.1LG01g05890
Synteny	Cp4.1LG01g05890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCCACCGCCCCCTCCGCTCCACCACCGCCATCGACGCTGCCGGAAGTCGCCGGGCTACACATGACCCAGTTTCCTCCCTCCTCTGCCGGATGGCTTTCGATGGAGTACGGGGGTCCGGCTACCGTCCGGTCCAGCAAAGACGTCGGCGATCAGTTTCCGGTGTTGGACATGGTGGACGCCATGTTCAACTCCGGCACCGGCAGCAGTAATAGTGTAGACTCCATCTTCGGCGCTAATGTGGGGGAAGAACAACATCAGCATCACAAGTGGGAGAAAGACAACAAGAAGAATTAG

mRNA sequence

ATGTCCGCCACCGCCCCCTCCGCTCCACCACCGCCATCGACGCTGCCGGAAGTCGCCGGGCTACACATGACCCAGTTTCCTCCCTCCTCTGCCGGATGGCTTTCGATGGAGTACGGGGGTCCGGCTACCGTCCGGTCCAGCAAAGACGTCGGCGATCAGTTTCCGGTGTTGGACATGGTGGACGCCATGTTCAACTCCGGCACCGGCAGCAGTAATAGTGTAGACTCCATCTTCGGCGCTAATGTGGGGGAAGAACAACATCAGCATCACAAGTGGGAGAAAGACAACAAGAAGAATTAG

Coding sequence (CDS)

ATGTCCGCCACCGCCCCCTCCGCTCCACCACCGCCATCGACGCTGCCGGAAGTCGCCGGGCTACACATGACCCAGTTTCCTCCCTCCTCTGCCGGATGGCTTTCGATGGAGTACGGGGGTCCGGCTACCGTCCGGTCCAGCAAAGACGTCGGCGATCAGTTTCCGGTGTTGGACATGGTGGACGCCATGTTCAACTCCGGCACCGGCAGCAGTAATAGTGTAGACTCCATCTTCGGCGCTAATGTGGGGGAAGAACAACATCAGCATCACAAGTGGGAGAAAGACAACAAGAAGAATTAG

Protein sequence

MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN

Homology

[Close]

BLAST of Cp4.1LG01g05890 vs. NCBI nr
Match: XP_023514954.1 (WRKY transcription factor 55 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198 bits (503), Expect = 1.41e-60
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 60
           MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV
Sbjct: 245 MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 304

Query: 61  DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN
Sbjct: 305 DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 343

[Close]

BLAST of Cp4.1LG01g05890 vs. NCBI nr
Match: KAG6599937.1 (WRKY transcription factor 55, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030616.1 WRKY transcription factor 55, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193 bits (491), Expect = 3.26e-59
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 60
           MSATAPSAPPPPS LPEVAGLHMTQFPP SAGWLSMEYGGPAT+RSSKDVGDQFPVLDMV
Sbjct: 208 MSATAPSAPPPPSPLPEVAGLHMTQFPPPSAGWLSMEYGGPATIRSSKDVGDQFPVLDMV 267

Query: 61  DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN
Sbjct: 268 DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 306

[Close]

BLAST of Cp4.1LG01g05890 vs. NCBI nr
Match: XP_022942271.1 (WRKY transcription factor 55 [Cucurbita moschata])

HSP 1 Score: 190 bits (482), Expect = 5.17e-58
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 60
           MSATAPSAPPPPS LPEVAGLHMTQFPP SAGWLSMEYGGPAT+RSSKDVGDQFPVLDMV
Sbjct: 195 MSATAPSAPPPPSPLPEVAGLHMTQFPPPSAGWLSMEYGGPATIRSSKDVGDQFPVLDMV 254

Query: 61  DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           DAMFNSGTGSSNSVDSIFGANVGEE+HQHHKWEKDN KN
Sbjct: 255 DAMFNSGTGSSNSVDSIFGANVGEEEHQHHKWEKDNTKN 293

[Close]

BLAST of Cp4.1LG01g05890 vs. NCBI nr
Match: XP_022996265.1 (WRKY transcription factor 55 [Cucurbita maxima])

HSP 1 Score: 187 bits (474), Expect = 8.14e-57
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 60
           MSATAPSAPPPPSTLPEVAGLHMTQ+PP S+GWLSMEYGGPAT+RSSKDVGDQFPVLDMV
Sbjct: 195 MSATAPSAPPPPSTLPEVAGLHMTQYPPPSSGWLSMEYGGPATIRSSKDVGDQFPVLDMV 254

Query: 61  DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           DAMFNSGTGSSNSVDSIFGANVGEE HQHHKWEKDNKKN
Sbjct: 255 DAMFNSGTGSSNSVDSIFGANVGEE-HQHHKWEKDNKKN 292

[Close]

BLAST of Cp4.1LG01g05890 vs. NCBI nr
Match: XP_038893186.1 (WRKY transcription factor 55 [Benincasa hispida])

HSP 1 Score: 120 bits (300), Expect = 1.89e-30
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEY-------GGPATVRSSKDVGDQ 60
           MSATAPSA PPPS      G H +QF P+SAGWLSME        GGPATVR  KDV DQ
Sbjct: 218 MSATAPSALPPPSV---AGGQHTSQFRPTSAGWLSMEVVSSGSASGGPATVRYGKDVADQ 277

Query: 61  FPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           FPVLDM D MFNSGT SSNS+DSIF A V ++ H  HKWEKD+KKN
Sbjct: 278 FPVLDMADVMFNSGTNSSNSMDSIFAAYVVDDDH--HKWEKDDKKN 318

[Close]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL
Match: A0A6J1FNE7 (WRKY transcription factor 55 OS=Cucurbita moschata OX=3662 GN=LOC111447366 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 2.50e-58
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 60
           MSATAPSAPPPPS LPEVAGLHMTQFPP SAGWLSMEYGGPAT+RSSKDVGDQFPVLDMV
Sbjct: 195 MSATAPSAPPPPSPLPEVAGLHMTQFPPPSAGWLSMEYGGPATIRSSKDVGDQFPVLDMV 254

Query: 61  DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           DAMFNSGTGSSNSVDSIFGANVGEE+HQHHKWEKDN KN
Sbjct: 255 DAMFNSGTGSSNSVDSIFGANVGEEEHQHHKWEKDNTKN 293

[Close]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL
Match: A0A6J1K6A5 (WRKY transcription factor 55 OS=Cucurbita maxima OX=3661 GN=LOC111491541 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.94e-57
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYGGPATVRSSKDVGDQFPVLDMV 60
           MSATAPSAPPPPSTLPEVAGLHMTQ+PP S+GWLSMEYGGPAT+RSSKDVGDQFPVLDMV
Sbjct: 195 MSATAPSAPPPPSTLPEVAGLHMTQYPPPSSGWLSMEYGGPATIRSSKDVGDQFPVLDMV 254

Query: 61  DAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           DAMFNSGTGSSNSVDSIFGANVGEE HQHHKWEKDNKKN
Sbjct: 255 DAMFNSGTGSSNSVDSIFGANVGEE-HQHHKWEKDNKKN 292

[Close]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL
Match: A0A3T0I8G3 (WRKY transcription factor 20 OS=Siraitia grosvenorii OX=190515 PE=2 SV=1)

HSP 1 Score: 117 bits (294), Expect = 1.07e-29
Identity = 68/112 (60.71%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQFPPSSAGWLSMEYG-------------GPATVRSS 60
           MS+TAPSAPPPP+   ++A  HM QF P   GWLSME+              GPATVR  
Sbjct: 236 MSSTAPSAPPPPT---DIAAQHMAQFRPPPGGWLSMEFSTAASGSGSGGSSAGPATVRYG 295

Query: 61  KDVGDQFPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           KDV DQFPVLDM DAMFNSG+ SSNS+DSIF A V E+   HHKWEKD+KKN
Sbjct: 296 KDVADQFPVLDMADAMFNSGSCSSNSMDSIFAACVAED---HHKWEKDDKKN 341

[Close]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL
Match: A0A6J1CZA4 (WRKY transcription factor 55 OS=Momordica charantia OX=3673 GN=LOC111015956 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.50e-23
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVA-GLHMTQFPPSSAGWLSMEYGG------PATVRSSKDVG-D 60
           MSATAPSA P     P+VA   HM QF   S GWLSM++G       PAT R  +D G D
Sbjct: 207 MSATAPSAAP-----PDVACSQHMAQFRSPSGGWLSMDFGSATGSGAPATARYGRDGGGD 266

Query: 61  QFPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           QFPVLDM DAMFNSG+ SSNS+DSIF A V EE   HHKW+KD+ KN
Sbjct: 267 QFPVLDMADAMFNSGSCSSNSMDSIFAACVAEE---HHKWDKDDHKN 305

[Close]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL
Match: A0A1S3C4H9 (WRKY transcription factor 55 OS=Cucumis melo OX=3656 GN=LOC103496757 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.53e-22
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSATAPSAPPPPSTLPEVAGLHMTQF-PPSSAGWLSMEY-------GGPATVRSSKDVGD 60
           MSATAPSAPPPP   P   G  ++Q   P+SA WLSM+        G P +VR  K+VGD
Sbjct: 218 MSATAPSAPPPP---PLATGQPISQLIHPASAAWLSMDVVGSGSKSGAPCSVRYGKEVGD 277

Query: 61  QFPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEQHQHHKWEKDNKKN 99
           QF V+DM D MFNSGT SSNS+DSIF A V E+    HKWEK++KKN
Sbjct: 278 QFAVVDMADVMFNSGTSSSNSMDSIFAAYVAED----HKWEKEDKKN 317

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05890 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g05890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514954.1	1.41e-60	100.00	WRKY transcription factor 55 [Cucurbita pepo subsp. pepo]	[more]
KAG6599937.1	3.26e-59	96.97	WRKY transcription factor 55, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022942271.1	5.17e-58	94.95	WRKY transcription factor 55 [Cucurbita moschata]	[more]
XP_022996265.1	8.14e-57	94.95	WRKY transcription factor 55 [Cucurbita maxima]	[more]
XP_038893186.1	1.89e-30	66.04	WRKY transcription factor 55 [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNE7	2.50e-58	94.95	WRKY transcription factor 55 OS=Cucurbita moschata OX=3662 GN=LOC111447366 PE=4 ...	[more]
A0A6J1K6A5	3.94e-57	94.95	WRKY transcription factor 55 OS=Cucurbita maxima OX=3661 GN=LOC111491541 PE=4 SV...	[more]
A0A3T0I8G3	1.07e-29	60.71	WRKY transcription factor 20 OS=Siraitia grosvenorii OX=190515 PE=2 SV=1	[more]
A0A6J1CZA4	6.50e-23	59.81	WRKY transcription factor 55 OS=Momordica charantia OX=3673 GN=LOC111015956 PE=4...	[more]
A0A1S3C4H9	1.53e-22	57.01	WRKY transcription factor 55 OS=Cucumis melo OX=3656 GN=LOC103496757 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g05890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g05890.1	Cp4.1LG01g05890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding