Cp4.1LG01g05610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g05610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-H2 finger protein
Location	Cp4.1LG01: 679549 .. 680121 (-)
RNA-Seq Expression	Cp4.1LG01g05610
Synteny	Cp4.1LG01g05610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCTCATAATCGGATCAGATTTATAAATATTCTTAGCATTATTCATAAATATTAATAAAAATATAATACAAAAACAATAAATTTTACAGTTTGTAATTAATTATTATTAAAGCAGAATTTGACTAAATTTACAGTAATCTATGGACTCAAATCTTTGAATTCGATTATGTAACCTCACACCATTTGAAGGTTGTTTGAGTTATCGGCGGCGCGGAGGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGAGTTATTGATTGGCAGTTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

mRNA sequence

ATGTACGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGATTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

Coding sequence (CDS)

ATGTACGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGATTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

Protein sequence

MYGDPTKRAARLQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTALRRGGGGVYFLRRLVQINCRLVEPLLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE

Homology

[Close]

BLAST of Cp4.1LG01g05610 vs. NCBI nr
Match: PSS33309.1 (RING-H2 finger protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 3.86e-09
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 12  LQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTAL------RRGGGGVYFLRRLVQIN 71
           ++ EPLV AL V+TM A RQ+L+ L +FKHA+ANTAL      RRGGG V     L  +N
Sbjct: 1   MRTEPLVDALAVKTMAAIRQHLHFLSIFKHAEANTALGFAETRRRGGGLVKH--DLEAVN 60

Query: 72  CRLVEP--LLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDG 112
           C  VE   L RRR      R G   GR    + DP+ V+E +   ++DG
Sbjct: 61  CGRVESEVLSRRR-----RRVGRMAGRGVAEATDPAGVEEEEEDGEEDG 102

[Close]

BLAST of Cp4.1LG01g05610 vs. NCBI nr
Match: GFS33559.1 (hypothetical protein Acr_00g0029270 [Actinidia rufa])

HSP 1 Score: 57.0 bits (136), Expect = 1.66e-07
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 12  LQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTAL-----RRGGGGVYFLRRLVQINC 71
           ++ EPLV AL V+TM A RQ+L+ L +FKHA+ANTAL     RR  GG+     L  +NC
Sbjct: 1   MRTEPLVDALAVKTMAAIRQHLHFLSIFKHAEANTALGFAETRRPDGGLV-KHDLEAVNC 60

Query: 72  RLVEP--LLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE 113
             VE   + RRR      R G   GR    + DP+ V+E    E++DGE
Sbjct: 61  GCVESGVMSRRR-----RRVGRVAGRGVAEATDPAGVEE----EEEDGE 99

[Close]

BLAST of Cp4.1LG01g05610 vs. NCBI nr
Match: PON78998.1 (hypothetical protein PanWU01x14_014990 [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 1.42e-06
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 7   KRAARLQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTALRRGGGGVYFLRRLVQINC 66
           KRA RL  EP +HAL +  M A RQ+L LL V +H +A+TALRR         RLV    
Sbjct: 26  KRATRLGTEPPIHALGMVAMAALRQHLQLLSVLEHPEADTALRRVRDPTRT--RLVSRIP 85

Query: 67  RLVEP-----------LLRRRPGGPDARDGS--REGREAMVSADPSSVKENKSHEKDDGE 113
           RLVE             LRR  GG     G    EG    V+ADP+ ++E +  +++DGE
Sbjct: 86  RLVEDNRQSHDRGGVEALRRSQGGALRVGGGWGGEGGGVAVAADPAGIEEEEGDDEEDGE 143

[Close]

BLAST of Cp4.1LG01g05610 vs. ExPASy TrEMBL
Match: A0A0A0KSF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G210010 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.81e-14
Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 25  TMMAQRQNLNLLPVFKHAQANTALRRGGGG-----VYFLRRLVQI-----NCRLVEPLLR 84
           TM A RQNL+LLPVFKHAQAN AL     G     ++  RRLVQ      N    E LLR
Sbjct: 3   TMTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLR 62

Query: 85  RRPGGP-DARDGSREGREAMVSADPSSVKENKSHEKDDGE 113
           RR G P D + G  EG E + SADP+ VKENKS+EKDDGE
Sbjct: 63  RRTGQPVDGKRGG-EGGELVESADPTGVKENKSYEKDDGE 101

[Close]

BLAST of Cp4.1LG01g05610 vs. ExPASy TrEMBL
Match: A0A2R6RTJ9 (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc03697 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.87e-09
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 12  LQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTAL------RRGGGGVYFLRRLVQIN 71
           ++ EPLV AL V+TM A RQ+L+ L +FKHA+ANTAL      RRGGG V     L  +N
Sbjct: 1   MRTEPLVDALAVKTMAAIRQHLHFLSIFKHAEANTALGFAETRRRGGGLVKH--DLEAVN 60

Query: 72  CRLVEP--LLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDG 112
           C  VE   L RRR      R G   GR    + DP+ V+E +   ++DG
Sbjct: 61  CGRVESEVLSRRR-----RRVGRMAGRGVAEATDPAGVEEEEEDGEEDG 102

[Close]

BLAST of Cp4.1LG01g05610 vs. ExPASy TrEMBL
Match: A0A7J0DF29 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0029270 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.05e-08
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 12  LQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTAL-----RRGGGGVYFLRRLVQINC 71
           ++ EPLV AL V+TM A RQ+L+ L +FKHA+ANTAL     RR  GG+     L  +NC
Sbjct: 1   MRTEPLVDALAVKTMAAIRQHLHFLSIFKHAEANTALGFAETRRPDGGLV-KHDLEAVNC 60

Query: 72  RLVEP--LLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE 113
             VE   + RRR      R G   GR    + DP+ V+E    E++DGE
Sbjct: 61  GCVESGVMSRRR-----RRVGRVAGRGVAEATDPAGVEE----EEEDGE 99

[Close]

BLAST of Cp4.1LG01g05610 vs. ExPASy TrEMBL
Match: A0A2P5E0D3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_014990 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.86e-07
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 7   KRAARLQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTALRRGGGGVYFLRRLVQINC 66
           KRA RL  EP +HAL +  M A RQ+L LL V +H +A+TALRR         RLV    
Sbjct: 26  KRATRLGTEPPIHALGMVAMAALRQHLQLLSVLEHPEADTALRRVRDPTRT--RLVSRIP 85

Query: 67  RLVEP-----------LLRRRPGGPDARDGS--REGREAMVSADPSSVKENKSHEKDDGE 113
           RLVE             LRR  GG     G    EG    V+ADP+ ++E +  +++DGE
Sbjct: 86  RLVEDNRQSHDRGGVEALRRSQGGALRVGGGWGGEGGGVAVAADPAGIEEEEGDDEEDGE 143

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05610 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g05610 vs. NCBI nr


Match Name	E-value	Identity	Description
PSS33309.1	3.86e-09	44.04	RING-H2 finger protein [Actinidia chinensis var. chinensis]	[more]
GFS33559.1	1.66e-07	43.12	hypothetical protein Acr_00g0029270 [Actinidia rufa]	[more]
PON78998.1	1.42e-06	40.00	hypothetical protein PanWU01x14_014990 [Parasponia andersonii]	[more]

BLAST of Cp4.1LG01g05610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSF2	2.81e-14	56.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G210010 PE=4 SV=1	[more]
A0A2R6RTJ9	1.87e-09	44.04	RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00...	[more]
A0A7J0DF29	8.05e-08	43.12	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0029270 PE=4 SV=1	[more]
A0A2P5E0D3	6.86e-07	40.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_014990 PE...	[more]

BLAST of Cp4.1LG01g05610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g05610.1	Cp4.1LG01g05610.1	mRNA