Cp4.1LG01g04910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g04910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	LOB domain-containing protein
Location	Cp4.1LG01: 957353 .. 958165 (-)
RNA-Seq Expression	Cp4.1LG01g04910
Synteny	Cp4.1LG01g04910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTTTTTTAAGTACTTACTTACTTTTATCATATAATTCAGACAATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCCCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGAAGCCACGCTGCGATTACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGGTTGTTCTAAAACTTTAAAACTTAAAGTCGATGATTAATGCTTTCTTAGCCTGTCAAATATTTTTCTTGTAGATCGTGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACTGCCGATATGGACAACGTTGCAGTGGTCGAGAATCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTACCGACTTTTGATGAAGTCGAAACTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTATCCGTTGATGAAAACTTTGCTTATCTATGGTAGTTGATCTTGATGTATCCATTTTGTTTGGATTTTTCTTCGTTTAAAACGACGAAATC

mRNA sequence

CTTCCTTTTTTAAGTACTTACTTACTTTTATCATATAATTCAGACAATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCCCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGAAGCCACGCTGCGATTACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCGTGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACTGCCGATATGGACAACGTTGCAGTGGTCGAGAATCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTACCGACTTTTGATGAAGTCGAAACTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTATCCGTTGATGAAAACTTTGCTTATCTATGGTAGTTGATCTTGATGTATCCATTTTGTTTGGATTTTTCTTCGTTTAAAACGACGAAATC

Coding sequence (CDS)

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCCCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGAAGCCACGCTGCGATTACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCGTGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACTGCCGATATGGACAACGTTGCAGTGGTCGAGAATCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTACCGACTTTTGATGAAGTCGAAACTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTATCCGTTGATGAAAACTTTGCTTATCTATGGTAG

Protein sequence

MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW

Homology

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-42
Identity = 87/146 (59.59%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAVV 129
           + AAIT++YEAL RMRDP YGCVAHIFAL Q++V+LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 130 ENPCIELQVSKQLNDLVMNTNDYQNE 156
            N      + + +N + M T ++ +E
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE 141

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-36
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 6   SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLP 65
           +SSSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 66  MHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDN 125
           +  R  AAIT++YEA  R++DP YGCV+HIFALQQ++V+LQ E+++L  Q A      D+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 126 VAVVENP 133
               ENP
Sbjct: 122 -PTSENP 127

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-33
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 2   TGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLL 61
           +G   SS       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLL
Sbjct: 24  SGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLL 83

Query: 62  LHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIAN 119
           LH+P+H RS A +T+ YEA  R+RDP YGCVAHIFALQQ++V+LQ E+  L + +A+
Sbjct: 84  LHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 14  SSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAA 73
           S CGACKFLRRKC   CVFAP+F +++  +HFAA+HKVFGASNVSKLL HLP+  R  AA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 74  ITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIA 118
           +T++YEA  R+RDP YGCVAHIFALQQ++++LQ ++  L +  A
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAA 109

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-32
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAVV 129
             AA T+ YEA  R +DP YGCV+HIF+LQQ++V+LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 130 ENPCI-------ELQVSKQLNDLVMNTNDYQNELLSQL 161
           ENP          LQ S  L+   + T++ Q E  S L
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDL 158

[Close]

BLAST of Cp4.1LG01g04910 vs. NCBI nr
Match: XP_023542245.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425 bits (1093), Expect = 3.98e-150
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120
           LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCI 180
           ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCI
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCI 180

Query: 181 GEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
           GEEEGFFGCNPNNAMENSAFDVSVDENFAYLW
Sbjct: 181 GEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212

[Close]

BLAST of Cp4.1LG01g04910 vs. NCBI nr
Match: XP_022941701.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 410 bits (1054), Expect = 3.52e-144
Identity = 203/212 (95.75%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGLTS SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120
           LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEI+SLQEEIDMLGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCI 180
           ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLP FD+VE NDAQMISPLFCI
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180

Query: 181 GEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
           GEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212

[Close]

BLAST of Cp4.1LG01g04910 vs. NCBI nr
Match: XP_022996495.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 404 bits (1039), Expect = 7.32e-142
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSS--CGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLTSSSSSSSSSS  CGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEI+SLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLPTFDEV+ NDAQMISPLF
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
           CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214

[Close]

BLAST of Cp4.1LG01g04910 vs. NCBI nr
Match: KAG7030707.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404 bits (1039), Expect = 7.86e-142
Identity = 202/215 (93.95%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSS---CGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNV 60
           MTGLTSSSSSSSSSS   CGACKFLRRKCSNHCVFAPFFTY+EATSHFAAVHKVFGASNV
Sbjct: 2   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 61

Query: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIA 120
           SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEI+SLQEEIDMLGSQIA
Sbjct: 62  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 121

Query: 121 NFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPL 180
           NFTADMDNV VVENPCIELQVSKQLNDLVMNTNDYQNELLSQLP  D VE NDAQMISPL
Sbjct: 122 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPL 181

Query: 181 FCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
           FCIGEE+GFFGCNPNNAMENSAFDV++DENFAYLW
Sbjct: 182 FCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYLW 216

[Close]

BLAST of Cp4.1LG01g04910 vs. NCBI nr
Match: KAG6600038.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1028), Expect = 4.53e-139
Identity = 201/214 (93.93%), Postives = 206/214 (96.26%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSS---CGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNV 60
           MTGLTSSSSSSSSSS   CGACKFLRRKCSNHCVFAPFFTY+EATSHFAAVHKVFGASNV
Sbjct: 1   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 60

Query: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIA 120
           SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEI+SLQEEIDMLGSQIA
Sbjct: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 120

Query: 121 NFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPL 180
           NFTADMDNV VVENPCIELQVSKQLNDLVMNTNDYQNELLSQLP  D VE NDAQMISPL
Sbjct: 121 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPL 180

Query: 181 FCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYL 211
           FCIGEE+GFFGCNPNNAMENSAFDV++DENFAYL
Sbjct: 181 FCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYL 214

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy TrEMBL
Match: A0A6J1FLU4 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446983 PE=3 SV=1)

HSP 1 Score: 410 bits (1054), Expect = 1.70e-144
Identity = 203/212 (95.75%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGLTS SSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120
           LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEI+SLQEEIDMLGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120

Query: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCI 180
           ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLP FD+VE NDAQMISPLFCI
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCI 180

Query: 181 GEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
           GEE+GFFGCNPNNAMENSAFDV+VDE F YLW
Sbjct: 181 GEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 404 bits (1039), Expect = 3.54e-142
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSS--CGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60
           MTGLTSSSSSSSSSS  CGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIAN 120
           KLLLHLPMH+RSHAAITV+YEALERMRDPTYGCVAHIF LQQEI+SLQEEIDMLGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLF 180
           FT DMDNVAVVENP +ELQVSKQLN+LVMNTNDYQNELLSQLPTFDEV+ NDAQMISPLF
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLF 180

Query: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
           CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW
Sbjct: 181 CIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy TrEMBL
Match: A0A6J1CDB4 (LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 PE=3 SV=1)

HSP 1 Score: 305 bits (782), Expect = 3.35e-103
Identity = 156/193 (80.83%), Postives = 169/193 (87.56%), Query Frame = 0


Query: 9   SSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHI 68
           SSSS SSCGACKFLRRKCS+ CVFAPFF+Y+EATSHFAAVHKVFGASNVSKLLLHLP+H 
Sbjct: 7   SSSSFSSCGACKFLRRKCSDQCVFAPFFSYEEATSHFAAVHKVFGASNVSKLLLHLPVHN 66

Query: 69  RSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAV 128
           RSHAAITVAYEALERMRDPTYGC+AHIFALQQE+ SLQEEI++LGSQIANFT   D VA 
Sbjct: 67  RSHAAITVAYEALERMRDPTYGCIAHIFALQQEVASLQEEIEILGSQIANFTTATDTVAT 126

Query: 129 VENPCIELQVSKQLNDLVMNTNDYQNELLSQLP--TFDEVETNDAQMISPLFCIGEEEGF 188
            ENP IELQVS+QL+D VMNT+DYQN L SQLP  TFD    NDAQMISPL C+GEE G+
Sbjct: 127 TENPFIELQVSQQLSDFVMNTDDYQNHLFSQLPHQTFDHRGQNDAQMISPLCCLGEENGY 186

Query: 189 FGCNPNNAMENSA 199
           FGCNPN AMEN A
Sbjct: 187 FGCNPN-AMENFA 198

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 291 bits (744), Expect = 3.78e-97
Identity = 157/220 (71.36%), Postives = 184/220 (83.64%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGL SS+SS+S   CGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLNSSNSSTS---CGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120
           LLHLP HIRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ SLQEEI++LGSQIANF 
Sbjct: 61  LLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFA 120

Query: 121 ADMDNVAVVENPCIE-LQVSKQLNDL-VMNTNDYQNELLSQLP--TFDEVETND--AQMI 180
               ++A V+NP I+ +QV +Q++   +MNTN YQNEL+S+LP  +FD V+ ++  AQMI
Sbjct: 121 TTGGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMI 180

Query: 181 SPLFCIGEEEGFFG-CNPNNAMENSAFDVSVDEN-FAYLW 212
           SPLFC+GEE+G F   N NN +E+SAFDVSV+EN   Y W
Sbjct: 181 SPLFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPW 217

[Close]

BLAST of Cp4.1LG01g04910 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 288 bits (738), Expect = 3.20e-96
Identity = 158/221 (71.49%), Postives = 182/221 (82.35%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           MTGL SS++SSS   CGACKFLRRKCS+ CVFAPFF+YDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLNSSTTSSS---CGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120
           LLHLP H RSHAAITVAYEALERMRDPTYGC+AHIFALQQE+VSLQEEI++LGSQIAN  
Sbjct: 61  LLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLA 120

Query: 121 ADMDNVAVVENPCIE--LQVSKQLNDLVM-NTNDYQNELLSQLP--TFDEVET-NDAQMI 180
               ++A VENP I+  +QVS+Q++   M NTN YQNEL S+LP  +FD ++  N AQMI
Sbjct: 121 TTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMI 180

Query: 181 SPLFCIGEEEGFFG-CNPNNAMEN-SAFDVSVDEN-FAYLW 212
           SPLFC+GEE+G F  CN NN +E+ SAFDVSV+EN   Y W
Sbjct: 181 SPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPW 218

[Close]

BLAST of Cp4.1LG01g04910 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 174.5 bits (441), Expect = 9.2e-44
Identity = 87/146 (59.59%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           +S  SSCGACKFLRRKC+  CVF+P+F+Y++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAVV 129
           + AAIT++YEAL RMRDP YGCVAHIFAL Q++V+LQEEI+ LGSQ+ NF+    N + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 130 ENPCIELQVSKQLNDLVMNTNDYQNE 156
            N      + + +N + M T ++ +E
Sbjct: 122 NN------IPEFVNQMTMATTNFVDE 141

[Close]

BLAST of Cp4.1LG01g04910 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-37
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 6   SSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLP 65
           +SSSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 66  MHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDN 125
           +  R  AAIT++YEA  R++DP YGCV+HIFALQQ++V+LQ E+++L  Q A      D+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 126 VAVVENP 133
               ENP
Sbjct: 122 -PTSENP 127

[Close]

BLAST of Cp4.1LG01g04910 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 2   TGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLL 61
           +G   SS       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLL
Sbjct: 24  SGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLL 83

Query: 62  LHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIAN 119
           LH+P+H RS A +T+ YEA  R+RDP YGCVAHIFALQQ++V+LQ E+  L + +A+
Sbjct: 84  LHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of Cp4.1LG01g04910 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-33
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 10  SSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIR 69
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 70  SHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAVV 129
             AA T+ YEA  R +DP YGCV+HIF+LQQ++V+LQ ++++L  Q       +D+ + +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPS-I 121

Query: 130 ENPCI-------ELQVSKQLNDLVMNTNDYQNELLSQL 161
           ENP          LQ S  L+   + T++ Q E  S L
Sbjct: 122 ENPNYYQDTKPQYLQESHDLHHHHLTTSNCQTEQNSDL 158

[Close]

BLAST of Cp4.1LG01g04910 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 137.9 bits (346), Expect = 9.5e-33
Identity = 63/117 (53.85%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60
           M    + +++ + S CGACKFLRRKC++ C+FAP+F+ ++  + FAA+HKVFGASNVSKL
Sbjct: 1   MASSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKL 60

Query: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIA 118
           LL++P+H R  A +T+AYEA  R+ DP YGCV+HIFALQQ++  LQ ++  + +QIA
Sbjct: 61  LLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	1.3e-42	59.59	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	9.0e-36	60.63	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
O22131	2.4e-33	58.97	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q5UG13	1.6e-32	62.50	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	6.0e-32	48.10	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]

BLAST of Cp4.1LG01g04910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542245.1	3.98e-150	100.00	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941701.1	3.52e-144	95.75	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
XP_022996495.1	7.32e-142	94.39	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
KAG7030707.1	7.86e-142	93.95	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6600038.1	4.53e-139	93.93	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Cp4.1LG01g04910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLU4	1.70e-144	95.75	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446...	[more]
A0A6J1K6X9	3.54e-142	94.39	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]
A0A6J1CDB4	3.35e-103	80.83	LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 ...	[more]
A0A0A0KNX8	3.78e-97	71.36	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	3.20e-96	71.49	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]

BLAST of Cp4.1LG01g04910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	9.2e-44	59.59	LOB domain-containing protein 33	[more]
AT3G58190.1	6.4e-37	60.63	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.7e-34	58.97	LOB domain-containing protein 18	[more]
AT2G42440.1	4.3e-33	48.10	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G42430.1	9.5e-33	53.85	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..115
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 12..160
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 12..160
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 15..112 e-value: 1.3E-32 score: 112.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 14..116 score: 21.818163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04910.1	Cp4.1LG01g04910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus