Cp4.1LG01g04850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g04850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 1050986 .. 1051897 (+)
RNA-Seq ExpressionCp4.1LG01g04850
SyntenyCp4.1LG01g04850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGCATGCTATGAATTTAATGGGAATGAATGTTTTTACAAGATGATTACTCATTGCACACTCAAGTCAACGAAAAACGACGCAGAAATCGACATCACAGATCTGTTTTGGCATAGGATTCCCAGACACAATTTGGATCGAAATCTCAAATCCTTCAAATAAGCTATGATTATGTTGCGAATGAAATATAACTGTACATGTATGTACATTCTCATGCTTATAAATATCAGCAGAAGTTGGCTTCTCAATTCGACATAGAAATGCATCGACAAATGACAGAGCAAAAGAGAACGCTAGTTCTTGCTTACCTCCTGTTCGGCCTCCTCATATCTTCTCAATGCGTTCATTCAATTGGCTTCGTGAATCATTTTGAATCGGCTGAATCCAGAGAAGCGCAACTGGGAAGAAAATTCATGTTCGTCGATACAGTGAGTACTGAGTCGATTCCTTCCGCTTTTTACATTCAATTCTTGACAAAATCTTCTTGTTTTTCTCACGAATCAAAAATCTTGCTTCTGTGAGAGAAGATGAAAGGTAGAGAACAGGTGAGAGCTAGCGGTCGGAAGAATCCTTCAGGACCGAACCCCATTGGGAATCGACACCCACCGTCAATCCAAGGCTGAACCAATGGCGCATCTATCAGTTCGTTGAAGTTCATTTTGGAGTTGAATCAGCTGAAAATCTGTCAAATTTTCGTTTGTGAAGAAGATGAACACCGTTGAATTTATGGAGTGTTTTTTCCATTGCGTTGGATTTTGCTTACTTCTTTGAATTTTTAGCGGAATTTCCATATAAATTATTCATATTCAAAAGTATCTTCATAAATCAGCAATAATTTAATTTTAATTTTAATTCAGGTACAGAACCGCCCGCAATTTAATATTGCATTAACTAAAATATTTAAAATGTAA

mRNA sequence

GGAAGCATGCTATGAATTTAATGGGAATGAATGTTTTTACAAGATGATTACTCATTGCACACTCAAGTCAACGAAAAACGACGCAGAAATCGACATCACAGATCTGTTTTGGCATAGGATTCCCAGACACAATTTGGATCGAAATCTCAAATCCTTCAAATAAGCTATGATTATGTTGCGAATGAAATATAACTGTACATGTATGTACATTCTCATGCTTATAAATATCAGCAGAAGTTGGCTTCTCAATTCGACATAGAAATGCATCGACAAATGACAGAGCAAAAGAGAACGCTAGTTCTTGCTTACCTCCTGTTCGGCCTCCTCATATCTTCTCAATGCGTTCATTCAATTGGCTTCGTGAATCATTTTGAATCGGCTGAATCCAGAGAAGCGCAACTGGGAAGAAAATTCATGTTCGTCGATACAGTACAGAACCGCCCGCAATTTAATATTGCATTAACTAAAATATTTAAAATGTAA

Coding sequence (CDS)

ATGTATGTACATTCTCATGCTTATAAATATCAGCAGAAGTTGGCTTCTCAATTCGACATAGAAATGCATCGACAAATGACAGAGCAAAAGAGAACGCTAGTTCTTGCTTACCTCCTGTTCGGCCTCCTCATATCTTCTCAATGCGTTCATTCAATTGGCTTCGTGAATCATTTTGAATCGGCTGAATCCAGAGAAGCGCAACTGGGAAGAAAATTCATGTTCGTCGATACAGTACAGAACCGCCCGCAATTTAATATTGCATTAACTAAAATATTTAAAATGTAA

Protein sequence

MYVHSHAYKYQQKLASQFDIEMHRQMTEQKRTLVLAYLLFGLLISSQCVHSIGFVNHFESAESREAQLGRKFMFVDTVQNRPQFNIALTKIFKM
Homology
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BLAST of Cp4.1LG01g04850 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (276), Expect = 1.82e-29
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 22 MHRQMTEQKRTLVLAYLLFGLLISSQCVHSIGFVNHFESAESREAQLGRKFMFVDTVQNR 81
          MHRQMTEQ RTLVLAYLLFGLLISSQCVHSIGFVNHFESAESR+AQ GRKFMFVDT++ R
Sbjct: 1  MHRQMTEQNRTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGR 60

Query: 82 PQ 83
           Q
Sbjct: 61 EQ 62

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04850 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600053.11.82e-2988.71hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG01g04850 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04850.1Cp4.1LG01g04850.1mRNA