Cp4.1LG01g04570 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g04570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L23, chloroplastic
Location	Cp4.1LG01: 1126793 .. 1128322 (-)
RNA-Seq Expression	Cp4.1LG01g04570
Synteny	Cp4.1LG01g04570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGGTCCGGCCCAATTCTCCAATTTACCATTGAAGGCCATATCTATTAGCTCCATTTTACAAACCCTAATTCGGCCGCAACCTTCCATCTCGCTATCCCTCTCTTTGTAGGTATGAATCTGCTTCCTGCGTGCCATTCTTCCTTCCTTCTTTTGTTTTTCTTCTCGTTTTGATCGTTTCTTGCTGCTAGCAGGTTGGTTATTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGGTATGCACGCATTCTAATTTTTTGTTTTTGAGTACGAGATGTTCATTTATTCGAATTTATGCTTCCATTTGTTTCAATCAAAGCTGAGTTCCGTAGAAGCGTTCCCAGTATTCAAAACCAAATCTGCTTCTGCTCTTAACTGCAAGAATTAGTGTGATTCTTCGTTTATTATATGATTGGGGGATGGGATTTAAGCAGAGTAGTTGGTTGAATTGAATCCTCTCTGGATTTTTCTGTTTACTTCGGATTTAAGTAATCTTCCTTCGAATGTTTCAAATAGTACTTTTAAGCAACATTTTGAGCTTTTGTATTCATTATACTAGTGGAATCTGATACTACTTAACTGCGCTTGGTTATATTGAGCTTTTGATGCTCTATCTGTCCTTAATAAGGCTTTTTATTTTGTTTTTTTTGCAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTCCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCTAAATATCCCAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAGATCGAGGATAATAACACCCTTGTTTTCATTGTTGACATTCGTGCAAACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGGTAATTTGGTACCCTACATTTTAAGTATTCATCATCATTTAAAGAGAACCTTGGTTTGATGCAAAGTCTCTATTGATTGATACATTGTGATGATGAATGATTTATGTCCTAATGTATAATCCTGCATCCCTGGTTCGCAGACCCGATGGAACGAAGAAGGCATACGTTAGGTTAACTCCGGATTATGATGCGTTAGATGTGGCGAACAAGATTGGTATCATCTAAGCTGCAGAGGTTGGAGCAAGTATTTTGATTTCAATTGTTACATGTTTAAATTTTGGGGGGCATTTTGTAGAAGGGACCCTAGTTTTATTTCATCTTTTTATTATGAATATGTACTGGTATTTGTTAGCTCAGATAGACTGACTGGGTTTACACAATCCATAGAACATTCATCCCCATTCCAATCATTTTCATTATAGTGTGCTTCAGATTCCATGACAACCTTAGTTATCCAATTGTTTTGCCCTTCCTCCCATCTTCTTATCATGTTTTTGGTGATTGCTTTGTGC

mRNA sequence

AAAGGGTCCGGCCCAATTCTCCAATTTACCATTGAAGGCCATATCTATTAGCTCCATTTTACAAACCCTAATTCGGCCGCAACCTTCCATCTCGCTATCCCTCTCTTTGTAGGTTGGTTATTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTCCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCTAAATATCCCAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAGATCGAGGATAATAACACCCTTGTTTTCATTGTTGACATTCGTGCAAACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGACCCGATGGAACGAAGAAGGCATACGTTAGGTTAACTCCGGATTATGATGCGTTAGATGTGGCGAACAAGATTGGTATCATCTAAGCTGCAGAGGTTGGAGCAAGTATTTTGATTTCAATTGTTACATGTTTAAATTTTGGGGGGCATTTTGTAGAAGGGACCCTAGTTTTATTTCATCTTTTTATTATGAATATGTACTGGTATTTGTTAGCTCAGATAGACTGACTGGGTTTACACAATCCATAGAACATTCATCCCCATTCCAATCATTTTCATTATAGTGTGCTTCAGATTCCATGACAACCTTAGTTATCCAATTGTTTTGCCCTTCCTCCCATCTTCTTATCATGTTTTTGGTGATTGCTTTGTGC

Coding sequence (CDS)

ATGGCACCTAAAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTCCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCTAAATATCCCAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAGATCGAGGATAATAACACCCTTGTTTTCATTGTTGACATTCGTGCAAACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGACCCGATGGAACGAAGAAGGCATACGTTAGGTTAACTCCGGATTATGATGCGTTAGATGTGGCGAACAAGATTGGTATCATCTAA

Protein sequence

MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-66
Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KK+D KAQALK AKAVK+G T   K KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-66
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD SKK+DPKAQA K AKAVK+G T K K++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+A+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-65
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALKAAKAVK+G  FK K KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAG-PTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A  +KK D KAQALK AKAVK+G  T + KAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-64
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVK+G   K  AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. NCBI nr
Match: XP_022943202.1 (60S ribosomal protein L23a-like [Cucurbita moschata] >XP_023548090.1 60S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo] >KAG7030738.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289 bits (739), Expect = 4.28e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. NCBI nr
Match: KAG6600068.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289 bits (739), Expect = 2.47e-97
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 52  MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 111

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK
Sbjct: 112 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 171

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 172 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 204

[Close]

BLAST of Cp4.1LG01g04570 vs. NCBI nr
Match: XP_022986038.1 (60S ribosomal protein L23a-like [Cucurbita maxima])

HSP 1 Score: 284 bits (726), Expect = 4.11e-96
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKAAKAVKAG TFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKAGSTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 281 bits (719), Expect = 4.80e-95
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVK+GPTFK KAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. NCBI nr
Match: XP_004147702.1 (60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >KAA0050284.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa] >KAE8647979.1 hypothetical protein Csa_000656 [Cucumis sativus] >TYK14757.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (715), Expect = 1.96e-94
Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVK+GPTFK KAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy TrEMBL
Match: A0A6J1FSD3 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448002 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 2.07e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy TrEMBL
Match: A0A6J1JFB7 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483893 PE=3 SV=1)

HSP 1 Score: 284 bits (726), Expect = 1.99e-96
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKAAKAVKAG TFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKAGSTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 2.33e-95
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVK+GPTFK KAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy TrEMBL
Match: A0A5A7U4W7 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3369G00030 PE=3 SV=1)

HSP 1 Score: 280 bits (715), Expect = 9.47e-95
Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVK+GPTFK KAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. ExPASy TrEMBL
Match: A0A1S3CFM9 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191 PE=3 SV=1)

HSP 1 Score: 280 bits (715), Expect = 9.47e-95
Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVK+GPTFK KAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g04570 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-66
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALKAAKAVK+G  FK K KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-66
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALKAAKAVK+G  FK K KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-65
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVK+G   K  AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-65
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVK+G   K  AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g04570 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-62
Identity = 131/154 (85.06%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVK+G        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT35	1.2e-66	89.61	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q07761	2.7e-66	88.96	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	3.0e-65	87.66	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
O22644	5.1e-65	88.31	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q9M3C3	3.3e-64	87.01	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of Cp4.1LG01g04570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943202.1	4.28e-98	100.00	60S ribosomal protein L23a-like [Cucurbita moschata] >XP_023548090.1 60S ribosom...	[more]
KAG6600068.1	2.47e-97	100.00	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986038.1	4.11e-96	98.69	60S ribosomal protein L23a-like [Cucurbita maxima]	[more]
XP_022995723.1	4.80e-95	97.39	60S ribosomal protein L23a [Cucurbita maxima]	[more]
XP_004147702.1	1.96e-94	96.73	60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribo...	[more]

BLAST of Cp4.1LG01g04570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSD3	2.07e-98	100.00	50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JFB7	1.99e-96	98.69	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1K8U2	2.33e-95	97.39	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5A7U4W7	9.47e-95	96.73	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CFM9	9.47e-95	96.73	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191...	[more]

BLAST of Cp4.1LG01g04570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	2.1e-66	87.66	ribosomal protein L23AA	[more]
AT2G39460.2	2.1e-66	87.66	ribosomal protein L23AA	[more]
AT3G55280.1	2.3e-65	87.01	ribosomal protein L23AB	[more]
AT3G55280.2	2.3e-65	87.01	ribosomal protein L23AB	[more]
AT3G55280.3	1.4e-62	85.06	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..62 e-value: 2.0E-18 score: 66.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..153 e-value: 7.1E-54 score: 183.0
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 77..153 e-value: 2.0E-29 score: 99.7
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 73..135 e-value: 3.0E-15 score: 56.3
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..153
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 73..153 score: 22.536179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR11620:SF81	RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATED	coord: 1..153
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 131..146
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04570.1	Cp4.1LG01g04570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome