Cp4.1LG01g04330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g04330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG01: 1353506 .. 1358571 (+)
RNA-Seq ExpressionCp4.1LG01g04330
SyntenyCp4.1LG01g04330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCGTGCTAAAGACGAAAAAGTTCTAATTTGTATGCGTTTTGGGGAAGAATGCTTGCAACGCTCATTTGAGATGTTATAGTACAACGTATAGATGCTTGTGTATGTACGTGAATTAGCTTGATTAACTATAGTTTGAGCGTCTAAATGTTAGTGAAGTGTCTCAATGTTGAAACCTTGAGAAATTTTGACTTGGACACCGTCTTCTCTTTCACTTGGTGATGATATTTGGTGATAAGGATGAAGCCCCTATTAATTATAGACCTTCATTCCGAGTTGTGGAACTAAGTTCTTTCGTTTTAAGTGAGCTAGACAAAAATACCAGATTAACCCAATATTATTGAAAATACCGTTAAAGCTACGAGCTAATAAACCAATTTGAACACTGCTCTACTGGAATTAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGATTTAAGAAGCTAGAGCTTAGTGGAAGGATGAATTACTCATACTATTATTGATATTTTTATTTTGAAAGTTTGAGATATTTTTGAATGTTTTTATAATTAATTATATATATATATATAAATAGTTTAACCTAATTGATTCATGGAGGAAGGAGGTGAAAGATGAATTTGATCCCATATAAATTATTTGAAATTATAATTACCAAACCAAAATTAGGGGAACAAAAAAGAATGTTAATTCGAAGACGAATTGGGATTGAATTGTTTTTCAGTGGGTTACAAGAAACAGAACAGTTTTCTTTCGAATCGTAAGCACGATGGCGATTCTCCTCAGTTTCAACAATTATGGGGTCCATCTTCGCCGGCCGCCGCCATATCCCCTCCGTCTCTCAAGCTGCTGCAATCGTACAGCTTCGTCGGTACTTGCTTCTCCGGAGAACTTCATCAGCAGGAAGATAGGGATTTGACGGAGCTGGCCTTTGCAGCTCCTCGGACTTCCAGCCATGTCTTTGCATTCATTTTCGCTCTCTCTCTCCTTGTCGTCGCTATCTACAGCTCTCTCAAAGGCGGCGGCAACCTCACAGGAGGCTTTATTGAGGAGGTATTTCACTTTCAGTTTCTATTTTCAAGGCCATTTTCTGTGATTGGAAGTATCAGCGTTTGTGGTTTGAATTCGCTCGCCTAGCTTTGGCTCGTGTTTAGGTTATAGAGAAAGGGTAATATATATTGAATATTAGTTATCTTATTAGCTTCGTTGGATTGAGATTTTCAGCTAACTTTATACCATTTTAGGTTAGAAATCAGCTGTATATTTAGTATTTTTAGTAGATGACCATCTTGTGATTTCATATATGACTTCGAAACACTGTTTTGGTGAGATTCCACGTTGATTGGGGAGGAGAACGAAACATTTCTTTTATAAGGATGTGGAAACCTCTCCATGCGTTTTAAAAACTTTGAGGGTAAGCCCAAATAGGACAATATCTACTAGTGGTGAGCTTGAGCCGTTACAAATGGTATTAGAGCCAAATACCGGACGGTGTGTCAGCAAACACGTTGGGCCTCGAGGGGTGGATTGAGGGGTCTCACATTGATTGGAGAAGGAAACGAGTGCCAGCAAGGATGCTGGGCCTCGAAGGGGGTGGATTCTGAGATCCCACATCGATTGGGGAGGAAAACAAAACATTCTTTATCAAGGTGTTGAAACCTCTCCCTAACAGGCGTTTTAAAAACCTTGAGGAGAAGTCCGAAAGGAAAATCCTAAAGAGAACAATATTTGCTAGCGATGGGTTTGGGCCGTTACAGTTTTTCTAGAGCTATTGCCTTCAACAATAGTGGTATAGCTCGTTTGTATCAGAAATTTTTACCCTGTCATCGTGTTTCCAAACCCCACATGAATGATGACGATCTTCACTTCAACTTCAATTCCCTCGTCTTCTTTTTGCACTTCTAAGCTGTAACTCATCCTGTAGGAAGCATTTGGATCAATTATACGTCCAGTTAACTGTGTCTGGGCTATACAAGTGTGGTTTCTTGGTTATCAAATTTATCAATGCATGTTTGCATCTCAGAGATGTTAACTACGCACATAAGGTTTTTCGTGAAGTCTTAGAACCAGATATCTTGTTGTGGAATGGCATCATAAAGGGCTACACTCAGAACAATATTTTTGCTGGTGCTATCAGAATGTATAAGGATATGCAAGTGTCAGGGGTGAACCCAGATTGCTTCACATTTTTGTATGTGCTTAAAGCGTGCAGTGGAATGTCGGTCGAAGGAATAGGTAAACAGATGCATAGCCAGACGTTTAAATATGGCCTTGGATCAAATGTGTTTGTGCAGAACAGTCTTGTGTCAATGTATGCTAGATTTGGCCAAACCTCATCTGCTAGGCTCGTCTTTGATAAGTTACATAATAGAACTGTTGTTTCGTGGACGTCCATCATTTCTGGGTATGTTCAAAATGGCGATCCCGTGGACGCGTTGAGAGTTTTCAAAGATATGAGGCGAAGTACTGTGAAACTTGATTGGATTGTCCTTGTTAGTGTTGTGACAGCCTACACAGACATGGAGGATTTGGGGCAAGGAAAAGCCATTCATAGCTTAGTGACTAAATTAGGTCTAGAATTCGAACCCGACATAGTGGTCTCGCTCACTAACATGTATGCTAAATGTGGACGGGTGGAAGTTGCTAGATTTTTCTTTAATCAGATGGAAAAACCAAATTTACTTTTGTGGAATGCTATGATTTCTGGTTATGCAAAAAATGGATATGGTGAAGAAGCAATCGAGCTATTCCGTAAGATGATTTCAAAGAATATCGGGGTCGATTCTGTTACTGTGAGGTCTGCTATTCTAGCCGTTGCCCAAGCGGGGTCTCTTGAACTAGCAAGATGGTTGGATGGTTATATCTCTAAGAGTGAGTACCGAGATGATGTTTTTGTGAACACAGCCCTTATAGATATGCATGCAAAATGTGGAAGCATATGTTTTGCTCGTAGTGTTTTCGATAGAATGGTCGATAAAGACGTTGTCTTATGGAGTGCTATGATTATGGGGTATGGATTACACGGTCATGGACAAGAAGCCATCGACCTTTACAACAGAATGAAGCAATCAGGAGTTCGTCCGAACGACGTTACTTTTGTTGGCCTTCTCACAGCATGTAAAAACTCGGGTCTTGTAAAAGAGGGATGGGAGCTTTTCCACCAGATGCGAGACTACGGGATTGAACCGCATCACCAGCATTACTCTTGCGTGGTCGATCTTCTGGGACGTGCAGGCTATTTGAATCGAGCTTATGATTTTATTATGAGCATGCCCATTAAACCTGGAGTTAGTGTTTGGGGGGCACTTTTAAGTGGATGTAAGATCCATCGTCAAGTGAGGTTGGGAGAGATAGCTGCAGAACAGCTTTTCTTATTAGATCCATATAATACAGGTCATTATGTACAACTCTCAAACTTATATGCTTCTGCCCATTTATGGAACCACGTGGGGAACGTTCGATTAATGATGACACAGAAAGGATTGAACAAGGACCTCGGACATAGTTCGATTGAGATCAATGGAAATCTCGAAACGTTCCATGTTGGAGATAGATCACATCCGAGATCGAAGGAAATCTTTGAAGAACTTGATAGATTGGAGAGGAGATTAAAGGCAGCTGGTTATGTTGCTCATATGGAATCTGTTCTACATGACTTGAATGATGAGGAGATTGAGGAAACTCTTTGTAACCATAGTGAGAGGTTAGCAGTTGCTTATGGCATCATCAGTACTGCTCCTGGAACTACACTTAGAATAACGAAAAATCTCCGTGCATGCGTTAATTGTCATTCGGCGATAAAGCTAATATCGAAGCTTGTCGATAGGGAAATAATTGTTCGAGATGCGAAACGCTTTCATCATTTCAAAGATGGAGTTTGTTCGTGCGGAGATTTTTGGTGAAGCTTGGTTAGTATTCTTTACTTACATCAACCTTACACGTAATGAATTTGCTGATTTTCTTTTGGCCTATACTAACCATCATTGATTCTGATGTGAAATTGAAGAAAGTCCAATTTTTCTGTGAAATGGTAACCAATCCATTGCCCCTTCATGTGCCTTTTTTTCAATGTTCAAGTTTGATCTATTATAATTTTCTGTTTGAGATGCTTCCGAACATTCTATTTTAGTTATATTGGAGAAAAACATGTCAAACTTCTGTTATGCATTTTAATAAGAATTCTACGTGGCATCACATGAATTTATGTGATAATTTTTCTTGAAGTTAATGATTATAAATCAATAAAGATGGTTGAAGTTAATTGATTCACTCGCGAAGTTTAGGATTTAGAACGATAGAACTCTGTGGTGATTTAGAACGATAGAACTCTTAAAGTTTAGGATTTAGATTGATAGAACTCTGTGGTGGTGCCTAACGGCGCCCTAACCTAGATCTCAAAAAGGGCCCTAACCTAGATCCCACAAAGGGCCCTAACCTAGATCCCACAAAGGGTTTTGGTCAATTAAGACAACAGACCAGTGGTTATGGAAGTTGAAATTTGCTAAAAAGTGTGTAACAACTCACCTACCGAATCAACTAGCTCAAAAAATGGATGGTCTCGCGATCTATACCCGACTCTTTGTACAAATTAGTTTATCAATCTATTGAGCCATCCAACCATCTATCTTTTGATTTTACAATAACATAAGAAGTAGTCTCTCTAAACTTTTCTTAAATTTTTGGTTTGCAAGAATTAATGTCATTATTTCTTTAAATTTAATCACAAGTTTTACAATTTACAACCTCTTAGTATTAAAAATCATCCAGCGAAATAAGTTGCAAACAACTTTTCAAGTTCTTAAAATCTTAAAAGTGGAAGGTGGTGGGATTGTCAACATTTAGCAATGGCTAATGGATACTCATTGACCAATTGAGATTGAATGGCTCACAACATGAAAGCTGGTGTTGGGTAATATGATTGAACTCTTCCAAAGATTCAAAGGGAAAATAATGGGTTTAGTTAATGATGAAGAAGATTGTGGTTTTGTGGTTAAAGGAGCTGCAACTCAAACACTGTTCACTGAAATTTCAAGTGTTCAAAACCACTATGTCCTAATCAAAGCGTAG

mRNA sequence

ATGGTGGGTTACAAGAAACAGAACAGTTTTCTTTCGAATCGTAAGCACGATGGCGATTCTCCTCAGTTTCAACAATTATGGGGTCCATCTTCGCCGGCCGCCGCCATATCCCCTCCGTCTCTCAAGCTGCTGCAATCGTACAGCTTCGTCGGTACTTGCTTCTCCGGAGAACTTCATCAGCAGGAAGATAGGGATTTGACGGAGCTGGCCTTTGCAGCTCCTCGGACTTCCAGCCATGTCTTTGCATTCATTTTCGCTCTCTCTCTCCTTGTCGTCGCTATCTACAGCTCTCTCAAAGGCGGCGGCAACCTCACAGGAGGCTTTATTGAGGAGTTAACTGTGTCTGGGCTATACAAGTGTGGTTTCTTGGTTATCAAATTTATCAATGCATGTTTGCATCTCAGAGATGTTAACTACGCACATAAGGTTTTTCGTGAAGTCTTAGAACCAGATATCTTGTTGTGGAATGGCATCATAAAGGGCTACACTCAGAACAATATTTTTGCTGGTGCTATCAGAATGTATAAGGATATGCAAGTGTCAGGGGTGAACCCAGATTGCTTCACATTTTTGTATGTGCTTAAAGCGTGCAGTGGAATGTCGGTCGAAGGAATAGGTAAACAGATGCATAGCCAGACGTTTAAATATGGCCTTGGATCAAATGTGTTTGTGCAGAACAGTCTTGTGTCAATGTATGCTAGATTTGGCCAAACCTCATCTGCTAGGCTCGTCTTTGATAAGTTACATAATAGAACTGTTGTTTCGTGGACGTCCATCATTTCTGGGTATGTTCAAAATGGCGATCCCGTGGACGCGTTGAGAGTTTTCAAAGATATGAGGCGAAGAGCTGCAACTCAAACACTGTTCACTGAAATTTCAAGTGTTCAAAACCACTATGTCCTAATCAAAGCGTAG

Coding sequence (CDS)

ATGGTGGGTTACAAGAAACAGAACAGTTTTCTTTCGAATCGTAAGCACGATGGCGATTCTCCTCAGTTTCAACAATTATGGGGTCCATCTTCGCCGGCCGCCGCCATATCCCCTCCGTCTCTCAAGCTGCTGCAATCGTACAGCTTCGTCGGTACTTGCTTCTCCGGAGAACTTCATCAGCAGGAAGATAGGGATTTGACGGAGCTGGCCTTTGCAGCTCCTCGGACTTCCAGCCATGTCTTTGCATTCATTTTCGCTCTCTCTCTCCTTGTCGTCGCTATCTACAGCTCTCTCAAAGGCGGCGGCAACCTCACAGGAGGCTTTATTGAGGAGTTAACTGTGTCTGGGCTATACAAGTGTGGTTTCTTGGTTATCAAATTTATCAATGCATGTTTGCATCTCAGAGATGTTAACTACGCACATAAGGTTTTTCGTGAAGTCTTAGAACCAGATATCTTGTTGTGGAATGGCATCATAAAGGGCTACACTCAGAACAATATTTTTGCTGGTGCTATCAGAATGTATAAGGATATGCAAGTGTCAGGGGTGAACCCAGATTGCTTCACATTTTTGTATGTGCTTAAAGCGTGCAGTGGAATGTCGGTCGAAGGAATAGGTAAACAGATGCATAGCCAGACGTTTAAATATGGCCTTGGATCAAATGTGTTTGTGCAGAACAGTCTTGTGTCAATGTATGCTAGATTTGGCCAAACCTCATCTGCTAGGCTCGTCTTTGATAAGTTACATAATAGAACTGTTGTTTCGTGGACGTCCATCATTTCTGGGTATGTTCAAAATGGCGATCCCGTGGACGCGTTGAGAGTTTTCAAAGATATGAGGCGAAGAGCTGCAACTCAAACACTGTTCACTGAAATTTCAAGTGTTCAAAACCACTATGTCCTAATCAAAGCGTAG

Protein sequence

MVGYKKQNSFLSNRKHDGDSPQFQQLWGPSSPAAAISPPSLKLLQSYSFVGTCFSGELHQQEDRDLTELAFAAPRTSSHVFAFIFALSLLVVAIYSSLKGGGNLTGGFIEELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFTEISSVQNHYVLIKA
Homology
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BLAST of Cp4.1LG01g04330 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.6e-41
Identity = 80/172 (46.51%), Postives = 119/172 (69.19%), Query Frame = 0 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           L V GL   GFL+ K I+A     D+ +A +VF ++  P I  WN II+GY++NN F  A
Sbjct: 44  LLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDA 103

Query: 172 IRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSM 231
           + MY +MQ++ V+PD FTF ++LKACSG+S   +G+ +H+Q F+ G  ++VFVQN L+++
Sbjct: 104 LLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIAL 163

Query: 232 YARFGQTSSARLVFD--KLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           YA+  +  SAR VF+   L  RT+VSWT+I+S Y QNG+P++AL +F  MR+
Sbjct: 164 YAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 59/159 (37.11%), Postives = 103/159 (64.78%), Query Frame = 0 

Query: 137 VNYAHKVFREVLEP-DILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG-VNPDCFTFLYVL 196
           ++YAHKVF ++ +P ++ +WN +I+GY +      A  +Y++M+VSG V PD  T+ +++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 197 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 256
           KA + M+   +G+ +HS   + G GS ++VQNSL+ +YA  G  +SA  VFDK+  + +V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 257 SWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFTEIS 294
           +W S+I+G+ +NG P +AL ++ +M  +      FT +S
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-28
Identity = 58/166 (34.94%), Postives = 101/166 (60.84%), Query Frame = 0 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           + + GL +  F+V K ++ C  + D++YA ++F +V  P++ L+N II+ YT N+++   
Sbjct: 33  IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92

Query: 172 IRMYKD-MQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 231
           IR+YK  ++ S   PD FTF ++ K+C+ +    +GKQ+H    K+G   +V  +N+L+ 
Sbjct: 93  IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152

Query: 232 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVF 277
           MY +F     A  VFD+++ R V+SW S++SGY + G    A  +F
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLF 198

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27
Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 0 

Query: 123 LVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG 182
           L +K + A   L+DV  A KVF E+ E ++++ N +I+ Y  N  +   ++++  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 183 VNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSAR 242
           V PD +TF  VLKACS      IG+++H    K GL S +FV N LVSMY + G  S AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 243 LVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDM 280
           LV D++  R VVSW S++ GY QN    DAL V ++M
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-26
Identity = 69/189 (36.51%), Postives = 108/189 (57.14%), Query Frame = 0 

Query: 109 IEELTVS-GLYKCGFLVIKFINACLHLRDVNYAHKVFREVL-EPDILLWNGIIKGYTQNN 168
           I  L +S GL    F   K I+   H R+   +  VFR V    ++ LWN II+ +++N 
Sbjct: 26  IHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85

Query: 169 IFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQN 228
           +F  A+  Y  ++ S V+PD +TF  V+KAC+G+    +G  ++ Q    G  S++FV N
Sbjct: 86  LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145

Query: 229 SLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQ 288
           +LV MY+R G  + AR VFD++  R +VSW S+ISGY  +G   +AL ++ +++      
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query: 289 TLFTEISSV 296
             FT +SSV
Sbjct: 206 DSFT-VSSV 213

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: XP_023525471.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353 bits (906), Expect = 1.47e-113
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 42  QLTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 101

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS
Sbjct: 102 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 161

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR
Sbjct: 162 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 212

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: XP_022941627.1 (pentatricopeptide repeat-containing protein At3g12770 isoform X2 [Cucurbita moschata])

HSP 1 Score: 349 bits (895), Expect = 6.50e-112
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 42  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 101

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS
Sbjct: 102 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 161

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR
Sbjct: 162 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 212

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: KAG7030779.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349 bits (895), Expect = 6.50e-112
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 42  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 101

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS
Sbjct: 102 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 161

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR
Sbjct: 162 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 212

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: XP_022941625.1 (pentatricopeptide repeat-containing protein At3g12770 isoform X1 [Cucurbita moschata] >XP_022941626.1 pentatricopeptide repeat-containing protein At3g12770 isoform X1 [Cucurbita moschata])

HSP 1 Score: 349 bits (895), Expect = 7.60e-112
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 48  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 107

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS
Sbjct: 108 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 167

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR
Sbjct: 168 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 218

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: XP_022988451.1 (pentatricopeptide repeat-containing protein At3g12770 isoform X2 [Cucurbita maxima])

HSP 1 Score: 343 bits (881), Expect = 8.06e-110
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 42  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 101

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYG GSNVFVQNSLVS
Sbjct: 102 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGFGSNVFVQNSLVS 161

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYAR+GQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDP+DALRVFKDMR+
Sbjct: 162 MYARYGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPMDALRVFKDMRQ 212

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy TrEMBL
Match: A0A6J1FN08 (pentatricopeptide repeat-containing protein At3g12770 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446929 PE=3 SV=1)

HSP 1 Score: 349 bits (895), Expect = 3.15e-112
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 42  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 101

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS
Sbjct: 102 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 161

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR
Sbjct: 162 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 212

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy TrEMBL
Match: A0A6J1FLM1 (pentatricopeptide repeat-containing protein At3g12770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446929 PE=3 SV=1)

HSP 1 Score: 349 bits (895), Expect = 3.68e-112
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 48  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 107

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS
Sbjct: 108 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 167

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR
Sbjct: 168 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 218

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy TrEMBL
Match: A0A6J1JH82 (pentatricopeptide repeat-containing protein At3g12770 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485683 PE=3 SV=1)

HSP 1 Score: 343 bits (881), Expect = 3.90e-110
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 42  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 101

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYG GSNVFVQNSLVS
Sbjct: 102 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGFGSNVFVQNSLVS 161

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYAR+GQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDP+DALRVFKDMR+
Sbjct: 162 MYARYGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPMDALRVFKDMRQ 212

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy TrEMBL
Match: A0A6J1JD09 (pentatricopeptide repeat-containing protein At3g12770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485683 PE=3 SV=1)

HSP 1 Score: 343 bits (881), Expect = 4.55e-110
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGLYKCGFLVIKF+NACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG
Sbjct: 48  QLIVSGLYKCGFLVIKFVNACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 107

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AIRMYKDMQVSGVNPDCFTFLYVLKAC GMSVEGIGKQMHSQTFKYG GSNVFVQNSLVS
Sbjct: 108 AIRMYKDMQVSGVNPDCFTFLYVLKACGGMSVEGIGKQMHSQTFKYGFGSNVFVQNSLVS 167

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 281
           MYAR+GQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDP+DALRVFKDMR+
Sbjct: 168 MYARYGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPMDALRVFKDMRQ 218

[Close]
BLAST of Cp4.1LG01g04330 vs. ExPASy TrEMBL
Match: A0A6J1CD43 (pentatricopeptide repeat-containing protein At3g12770 OS=Momordica charantia OX=3673 GN=LOC111010106 PE=3 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.04e-92
Identity = 145/196 (73.98%), Postives = 164/196 (83.67%), Query Frame = 0 

Query: 86  ALSLLVVAIYSSLKGGGNLTGGFIEELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFR 145
           A S L      +L G  +L   +++ L VSGL+KC FLVIKF+NACLHL DV YAHK FR
Sbjct: 18  AFSKLAATSQEALLGRKHLDQLYVQ-LIVSGLHKCRFLVIKFVNACLHLGDVYYAHKAFR 77

Query: 146 EVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGI 205
           EVLEPDILLWN +IKGYTQNNIF GA+++Y +MQVSGV+PDCFTFLYVLKAC GMS+E I
Sbjct: 78  EVLEPDILLWNAVIKGYTQNNIFVGAVKLYTEMQVSGVHPDCFTFLYVLKACGGMSIEEI 137

Query: 206 GKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQ 265
           GKQMH QTFKYG GSNVFVQNSLVSMYA+FGQTS AR+VFDKL +RTVVSWTSIISGYVQ
Sbjct: 138 GKQMHGQTFKYGFGSNVFVQNSLVSMYAKFGQTSPARVVFDKLQDRTVVSWTSIISGYVQ 197

Query: 266 NGDPVDALRVFKDMRR 281
           NGDP +AL VFK MR+
Sbjct: 198 NGDPAEALSVFKKMRQ 212

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-42
Identity = 80/172 (46.51%), Postives = 119/172 (69.19%), Query Frame = 0 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           L V GL   GFL+ K I+A     D+ +A +VF ++  P I  WN II+GY++NN F  A
Sbjct: 44  LLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDA 103

Query: 172 IRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSM 231
           + MY +MQ++ V+PD FTF ++LKACSG+S   +G+ +H+Q F+ G  ++VFVQN L+++
Sbjct: 104 LLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIAL 163

Query: 232 YARFGQTSSARLVFD--KLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           YA+  +  SAR VF+   L  RT+VSWT+I+S Y QNG+P++AL +F  MR+
Sbjct: 164 YAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-29
Identity = 59/159 (37.11%), Postives = 103/159 (64.78%), Query Frame = 0 

Query: 137 VNYAHKVFREVLEP-DILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG-VNPDCFTFLYVL 196
           ++YAHKVF ++ +P ++ +WN +I+GY +      A  +Y++M+VSG V PD  T+ +++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 197 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 256
           KA + M+   +G+ +HS   + G GS ++VQNSL+ +YA  G  +SA  VFDK+  + +V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 257 SWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFTEIS 294
           +W S+I+G+ +NG P +AL ++ +M  +      FT +S
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR 10
Match: AT2G20540.1 (mitochondrial editing factor 21 )

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-29
Identity = 58/166 (34.94%), Postives = 101/166 (60.84%), Query Frame = 0 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           + + GL +  F+V K ++ C  + D++YA ++F +V  P++ L+N II+ YT N+++   
Sbjct: 33  IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92

Query: 172 IRMYKD-MQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 231
           IR+YK  ++ S   PD FTF ++ K+C+ +    +GKQ+H    K+G   +V  +N+L+ 
Sbjct: 93  IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152

Query: 232 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVF 277
           MY +F     A  VFD+++ R V+SW S++SGY + G    A  +F
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLF 198

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-28
Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 0 

Query: 123 LVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG 182
           L +K + A   L+DV  A KVF E+ E ++++ N +I+ Y  N  +   ++++  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 183 VNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSAR 242
           V PD +TF  VLKACS      IG+++H    K GL S +FV N LVSMY + G  S AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 243 LVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDM 280
           LV D++  R VVSW S++ GY QN    DAL V ++M
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR 10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-27
Identity = 69/189 (36.51%), Postives = 108/189 (57.14%), Query Frame = 0 

Query: 109 IEELTVS-GLYKCGFLVIKFINACLHLRDVNYAHKVFREVL-EPDILLWNGIIKGYTQNN 168
           I  L +S GL    F   K I+   H R+   +  VFR V    ++ LWN II+ +++N 
Sbjct: 26  IHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85

Query: 169 IFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQN 228
           +F  A+  Y  ++ S V+PD +TF  V+KAC+G+    +G  ++ Q    G  S++FV N
Sbjct: 86  LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145

Query: 229 SLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQ 288
           +LV MY+R G  + AR VFD++  R +VSW S+ISGY  +G   +AL ++ +++      
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query: 289 TLFTEISSV 296
             FT +SSV
Sbjct: 206 DSFT-VSSV 213

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTV84.6e-4146.51Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX... [more]
A8MQA31.5e-2837.11Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
Q9SIL52.0e-2834.94Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX... [more]
P0C8991.7e-2741.40Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
Q9SS602.4e-2636.51Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525471.11.47e-11399.42pentatricopeptide repeat-containing protein At3g12770 [Cucurbita pepo subsp. pep... [more]
XP_022941627.16.50e-11297.66pentatricopeptide repeat-containing protein At3g12770 isoform X2 [Cucurbita mosc... [more]
KAG7030779.16.50e-11297.66Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr... [more]
XP_022941625.17.60e-11297.66pentatricopeptide repeat-containing protein At3g12770 isoform X1 [Cucurbita mosc... [more]
XP_022988451.18.06e-11095.32pentatricopeptide repeat-containing protein At3g12770 isoform X2 [Cucurbita maxi... [more]
BLAST of Cp4.1LG01g04330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FN083.15e-11297.66pentatricopeptide repeat-containing protein At3g12770 isoform X2 OS=Cucurbita mo... [more]
A0A6J1FLM13.68e-11297.66pentatricopeptide repeat-containing protein At3g12770 isoform X1 OS=Cucurbita mo... [more]
A0A6J1JH823.90e-11095.32pentatricopeptide repeat-containing protein At3g12770 isoform X2 OS=Cucurbita ma... [more]
A0A6J1JD094.55e-11095.32pentatricopeptide repeat-containing protein At3g12770 isoform X1 OS=Cucurbita ma... [more]
A0A6J1CD431.04e-9273.98pentatricopeptide repeat-containing protein At3g12770 OS=Momordica charantia OX=... [more]
BLAST of Cp4.1LG01g04330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G12770.13.2e-4246.51mitochondrial editing factor 22 [more]
AT4G21065.11.1e-2937.11Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G20540.11.4e-2934.94mitochondrial editing factor 21 [more]
AT3G49142.11.2e-2841.40Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G03580.11.7e-2736.51Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 150..197
e-value: 9.3E-10
score: 38.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 226..250
e-value: 0.24
score: 11.7
coord: 254..282
e-value: 1.6E-8
score: 34.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 254..282
e-value: 6.9E-8
score: 30.2
coord: 155..187
e-value: 4.5E-6
score: 24.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 151..185
score: 10.281757
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 252..286
score: 10.676364
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 204..299
e-value: 1.6E-16
score: 62.2
coord: 117..203
e-value: 7.8E-13
score: 50.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR47924:SF50SUBFAMILY NOT NAMEDcoord: 111..289
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 111..289

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04330.1Cp4.1LG01g04330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0080156 mitochondrial mRNA modification
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding