Cp4.1LG01g04290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g04290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	exosome complex component RRP41 homolog
Location	Cp4.1LG01: 1396177 .. 1403086 (+)
RNA-Seq Expression	Cp4.1LG01g04290
Synteny	Cp4.1LG01g04290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGTGTGGAAACCTAGCCCTAATCAAATGCATGTTATACATACATACACACATACATACATATATATACATGTACATATGTATATACATTAATAAAATTAAAAAAAAAAAAACTATAATTTTGCCATTTTGGTTTTTTAATTACATTATTTTAAAAATTAATCTGAAAATTTATGGGAAAGTATTTTATATAATTTAAGCTCAATTTTTTGGTGCGCCTTTCCTTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCCGCGCCACTTTCTGCGTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGTCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCCTGCTCCTGGCAAAACCTACGAACTTATTCGAATTGAACCGACTGGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGGTAGTTCCCCTTCTCATGCTGTCGCTTAATGCCTCTTCTTCCTTATTTGAATTCTTCACTCCTGTTCCGCTCAATTTTTTACTTTATTGTTTAATTTTAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGGTACTTACTTTCACTTCTATGAACTGAATGATTCTTGAAAATGGCTGTCTCTTCCTATATTTTTATCGAAGACTAAGTAACGGAATGTCATCACTTTTCTCCTGATTTAGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTATAATAGTTCAGCAATTATTGTATGTACCTCGTTAAAAAAATCTATGAACATAAGAACTTATGGAGCTGTGTATTTTTCTTGTATTAATCCATTTGGGTATTTATGTTGAAGGCTTCTACTGTATTGTTGGAATGAATTCCTTTGTTGCTTGTGTAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTTGAACTTTCTTCTGGATGCTCTTGTTTTGAAGTTCGAATTCTTAATGTGCATTAGTAACCCATTGTTGAATCCTTGATCTCTTTCAGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGTCATTTATTTTTAATCTGTGTTTGTGTGTGTGCACTGCCATAATTGTCCCTTAATTGTGAATGATTACAGTTGATTGAATTCCATTAAATAAAAGTATGGTCAATATTCATATCTTGAAACATAAGAAATTTGTAACCATGAAAGATAGCAGTTAGGTTATTCTAGTTCAATTTTGCTTAGGTGTCACCAGATGGAACAAATTAAAAACTGATGTAAAAGAACTATGATAGAGATGTTTTTATATCTATTTGGTTTAATGCTGTAATTTATATTAAATTATGGCATTCTTCACAATCAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGGTTTTTGACAATAATCTTACGAGCTGCTCCTCTATGATTTTAACCTTCATCTTTTCTCATTTTTATTTGTTACGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTATAGTTAAAGTTAATGATCAAGTCTATCAGATGTAGCTCTTCATATTATTAGTTCTAGTTCAGATATTTTTAGGCCATATTATATTTTCTTGCCATCTTTCTTTATATTTGTTATTTTCTTCAAGCATTCCTCCTTTTTTTTTGTTTTTTTTTTACAAAATAGAAGGTTAAAATTTTTCCGCACTCTCTCCCTGCTATCTTCTTCTATGTGCTTCCTTAATGCCAAAAGTTCGAAGCCTGCAAGTATGTTTTTGTTCACTACCCAACCTCTCAGAAGTTAGGAGCAGCTCTTTTTAGGGAATTCCCTTAAAAACAAGGCCGATGCTCCATGGGAATATGTAGTAAAAAACATTTCATAGGAAACTTGACTTGAGAGAAACAACTACATATAAAAGTATTCAAAGACTCGAGTAGAGACATAAATGAAATTTGAGATATGAGGAATTTTAAAGCTTCTTCGTGGTCTTTCACCTCTATTTTTGTTGTAACTAAAATGTTTCTTTTTCCTAAAAAAATCAATGTTGACAGAGGAACTATTTATTATCCTGTTGGCCTAAGCAGGCCGATGCCTGACTTCTTATTACTTGTTTCTTCATTTCCTTTCAAAGAATACACTTAACGTCTAACTAGAGTGTCTATGCATTGTACAATGTTCTGTCTTCAGTGGTTATGATTTGAAGCATCTAGACTACCTGGCCAATATAATTGTGAAACATCATTAGTTTATGTACTTTCCTTTCTTTTCATGAAGAATGTAGCCTCAGACATTCTGAAAGATTTCTTGTTTATAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTAGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGGTAATTTAATATAACCTGTCTACTGCACCAACATTTGTTTTTATTTAATTTNTTTTTTTTTTTTTTTTTTCCTCTCAAAATGTTGCTTGGTTTAACTAGAACTATTATGGTTTGAAATTATGATATGGGCAGATCTGAATTATGTGGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGGTTCATTAACTTCTACCTTTTCTTCTTCTAATCGCTCTAGTGTAATCTGCCATTTTGGTGATTTTGTGAGACTCAGTTTGCTGTATTTCAAAATCAAATTGATTATTTTTGTTTGTCCTCTCCCTATCCTTTTGTACTGCTTCCAATTTTATATATTACATTCTGTAATATTAAACTAGTCTTCTCTAGTCACCACAATCCATACATTTTGACATGAACATTTGGTGTAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGGTAAGGACTCAATGACTCTTCTCGTTTTTTCCCCTTAAATCTTTACAACTGGACATCGTTATTGAATCAAATTCCATCATAACAATGTACTGTTAACCCCATAGTGTGATTGATGAGGGTTGGATTATTCAAAATTTCTGCTGTTTTTGTTGACAGGTAATGTTAGAGAGTACCAAAAAGCTCGAATATTGCCGTGGAGCATAGCCGAACCGGTTTTCAGGCATTCTTACACAAAGGAAGGAATCTTCAGGTGTGTTCTAACTTCAGTAATGGACTGGAGAACTTTTCAGAAAAGATGTCATGTTAAGTTGGTCCCATCTTCCAGTTTGTTGAATTAATCTCTTGCCCTGATGTACAGAATGTGTTTAGTTTTTAGCTTATATTTAACAAATCAAAAGCCTTCACTCATGGATTGGCTTGGCTTAACATTTTTTTATTTTATTTTGTTTCCTTCTTTAATTATTGCCCACAAAATTTATATGAAGGGACCTTGAACAAGAAGATAAAACAATTGATGCTGTAATGATCTTCTTATGTCATAAACTGCATTATTAGTACCGAATGAATATGTGCCTACTTAAGTCTGTTTAACTGGATATACTGTTTCTGTTGTTGATCATAAATATGCAAATTCAAATTAGCTCACTTCAATATTGACTTCTAAACTGAGGATATGTCAATTTCGAGTTTAGACCGAGAATTATGACAATATAGGAGACAGATTGTAAAGATAGAAAATCGAGAAGGGATTGAACGTAGAGCTTCGGTTTTAGCTAGTTTATAGTTATTTAGTGAGTTTTTTCCAAAACCACTTACCTATAATCGAATCGAGTGAGATATATGTGCTCCAACATACAAATGTTACTGAAATATAATAACAAGTACTATGTGTATATATATATATATATATTTTTTTTTTTTTTTTAATTTTGGGTTACGAAATTTTAGATTATTTTGTAGATTTATTAATTTTGAGATATTATTATATTAAAAAGTATATAGGTTTTATAATTTAGATAGAATTAGGCATATTTTATTTTAAGATTTGAGATTCCTAAGAGTATTGATTTTAAGTACGAGAGAATTTAATTAATTAAATCGCTTAAAATTCGGATTTTACCATTTTTTTCTCTCTATAATTTGGGCCTAAAACCCTTCGGCCCATTTCACTTCCTCTTCTCTCTTTCCGGCTTATAAAGTTGAGACACCTTTACCTTTTGACTCTTCTGCGCGTGGTTGCGTTACTGTGTTAGAGAGAGAGCGAGAGAGAGCGAGAGAGAAGAGAGAGAGCGAAAGAGAGAGAGATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTCGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAGACCTGTATGCAGGTCTTTCTCTTTCCCTACTTCACAATTATTGTTGTTCATCATCAGATTTAATCATAATCCTTTTGTGTATATCTCTCCCTACCCCCTGTTTCTTCTTGTTGCTTCTACTGAACTTATATTTCTTCTGTCCTGACTTTTAATTTCATAGTATAAGACTCATTTTTTCAGTTCTTGGAGTCTATCAAGTCTCGGTCGGTCAAGGATTTTTATTTTCTATTTTTGGGTTTTCTTTAATCTGGGCTTGATTTTTGTATGTATGCTTGCCTCAATTGACCAATTTTCTGAATTTTATGTGCGATTTTTAGAATTGGTTGCTTGATCTTCTCTGTTATCATCATCTGTTCTGTTGCAATTGTGCTCCTTACTCGCTTTCTATAATCATGCTTTCTCATTTATTTGAGCACATCAATCCTATTATGTACCTGAAATGAAGTTCCTTCATTGCAATTGTTATTAAACGACTTGCTTATTGATCTTTAATAATCCAGTCTTTGACTGTTGTTGCTGTATGCACGAGGTTTTCAATGCTAGCGGATTGATCAAAGTTTGAGTTCATGAGCCATCTAGACTCGTTTTTGGTGTATGATTTGTTTAGAGTCTTTTTCCCCTTGTCTTTGTTGTGCGGAGCCACAGTCCTTCCATCGTGAATGTTTAAAGTCATGAAGATTTTTTCACATAATTTGTTTGGTTTGCTCTACATGATCATCTTTATAGTATTTTGAGATGTTTATATCTGATTGGTATGTTCTTGATCTAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTCGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGACGTTCTGCTGCTTCTGCAAGTTCTTATTGATCTTAAATTTTAGAGATCGCGTCTCGAAAATGTGTACTCTATGACATTATTCGCTCGTGAAAAGGATATGGTTTATTTTGGATGTCATTGTGTGCCATGACTTCTCAAAACATTTGATCACTGTTGGACCTCTGATGAGGGAATATAACTGTTTATGGTAACAAGTCTTTAATCAGGTATGTTTTGGTTGAATAAGTTGTTTTCCGATCTATTGATGATGTTTGATTACAATAGTTGATATGAAAATGAACACTGAACTGCCTGGTTTATGAACTAAAAGGGTATGAACACTGAACTTCTAATACACTTCGTTTCATAATTCTGTCATTTGTGATCACATATCCATTTTTCTTCTGGTATAACTAATAGCCATATATGCAGCTTCTATTTTCTGGAAAATTTTGCTCTCTGTAATTCTTCAATGCCTAATCTTTCTTGCAATCTTTTCGACCATTCCTATCACTGCTATTCCAATGACATACCAAGTGACTCCTCTTTGTATAAGCTGCATCCAATGACTATTAACTAACTCCAGTGCCACAGAACCTCCGATGTGTTCCTTCAAGCCGCTGGCACCATCATCTGTCACCATTTGCTGGATTACAGTGGTTGCAACTATCGATATCAAGACTGGTAATGCCAATCTCATGGGGCTAGTATGATCACCACCACCCACTTCAAAATCAAGGTCTTTTGATTCTTTGCTACGTTTGGTCTCTACCCTTGGATTTGAGATTGTGCTTATTGGAGTTTGAGTTGAGACTGGAAGTGCAAGGGTGGTCGGAACCCAGTAATCGTCCTTTATGTATTTTGTTGTAGTTCCATTTTTGTCTTCGGTTTTTGCCTTGAGTTGTTTCCTTGCAGTAATAGCAGCTTGAAGTTTGTTGATTTGTGGTGTGGATGTGTTGACGACGAGCGTCAGGTTTTGACTGTGTTTGGATCCGGTGGCTGTCTGCCAAAATAAGCAATTTGAGATTGATCTGATGGCTTGAATTGCAGACAACTGTGCTTTGTTCTCGAAGGTTGTCCCCTGATAAACAATCATACAACTGGATGAAGTTTTGAACGATTTTAAGTTAATGGTGATGTCGAAGAATATTTTGTGTCTAACCTTGACATGCTGTTTTGAAGTCTTCTCCATAGCTTCCTTGAATCTGGTTTGGAACTTCTTCACGTCTGTGAAAATGTTTGACACTCTTTCACCAGCTGCGTTGCCCATACCAACTCTTACGTTTCC

mRNA sequence

CAGAGTGTGGAAACCTAGCCCTAATCAAATGCATGTTATACATACATACACACATACATACATATATATACATGTACATATGTATATACATTAATAAAATTAAAAAAAAAAAAACTATAATTTTGCCATTTTGGTTTTTTAATTACATTATTTTAAAAATTAATCTGAAAATTTATGGGAAAGTATTTTATATAATTTAAGCTCAATTTTTTGGTGCGCCTTTCCTTTTGTTATTCTTGTAGAGTTGGCAAAACCTTCGCCGCCGCGCCACTTTCTGCGTCTTCCTTCTCTTCAGTCCTAAAACCCTTCCCAACCTTGCCGCCGCCGCCGTCATCCCTTGTTCCTTACCGCCGAAACCTCGCCCATCGACCTGCCTCCTGCTCCTGGCAAAACCTACGAACTTATTCGAATTGAACCGACTGGCACCGATAATCTAAACTAGCATTCTAAGACTGCAATATCCTTTCGCTCAGCTGTCTAGATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTAGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATCTGAATTATGTGGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTCGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGACGTTCTGCTGCTTCTGCAAGTTCTTATTGATCTTAAATTTTAGAGATCGCGTCTCGAAAATGTGTACTCTATGACATTATTCGCTCGTGAAAAGGATATGGTTTATTTTGGATGTCATTGTGTGCCATGACTTCTCAAAACATTTGATCACTGTTGGACCTCTGATGAGGGAATATAACTGTTTATGGTAACAAGTCTTTAATCAGGTATGTTTTGGTTGAATAAGTTGTTTTCCGATCTATTGATGATGTTTGATTACAATAGTTGATATGAAAATGAACACTGAACTGCCTGGTTTATGAACTAAAAGGGTATGAACACTGAACTTCTAATACACTTCGTTTCATAATTCTGTCATTTGTGATCACATATCCATTTTTCTTCTGGTATAACTAATAGCCATATATGCAGCTTCTATTTTCTGGAAAATTTTGCTCTCTGTAATTCTTCAATGCCTAATCTTTCTTGCAATCTTTTCGACCATTCCTATCACTGCTATTCCAATGACATACCAAGTGACTCCTCTTTGTATAAGCTGCATCCAATGACTATTAACTAACTCCAGTGCCACAGAACCTCCGATGTGTTCCTTCAAGCCGCTGGCACCATCATCTGTCACCATTTGCTGGATTACAGTGGTTGCAACTATCGATATCAAGACTGGTAATGCCAATCTCATGGGGCTAGTATGATCACCACCACCCACTTCAAAATCAAGGTCTTTTGATTCTTTGCTACGTTTGGTCTCTACCCTTGGATTTGAGATTGTGCTTATTGGAGTTTGAGTTGAGACTGGAAGTGCAAGGGTGGTCGGAACCCAGTAATCGTCCTTTATGTATTTTGTTGTAGTTCCATTTTTGTCTTCGGTTTTTGCCTTGAGTTGTTTCCTTGCAGTAATAGCAGCTTGAAGTTTGTTGATTTGTGGTGTGGATGTGTTGACGACGAGCGTCAGGTTTTGACTGTGTTTGGATCCGGTGGCTGTCTGCCAAAATAAGCAATTTGAGATTGATCTGATGGCTTGAATTGCAGACAACTGTGCTTTGTTCTCGAAGGTTGTCCCCTGATAAACAATCATACAACTGGATGAAGTTTTGAACGATTTTAAGTTAATGGTGATGTCGAAGAATATTTTGTGTCTAACCTTGACATGCTGTTTTGAAGTCTTCTCCATAGCTTCCTTGAATCTGGTTTGGAACTTCTTCACGTCTGTGAAAATGTTTGACACTCTTTCACCAGCTGCGTTGCCCATACCAACTCTTACGTTTCC

Coding sequence (CDS)

ATGGAGTTTGTGAGCCCTGAAGGACTTCGCTTGGACGGTCGTCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTTTATTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTGCGTTGCGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGTGACAGGCGATCGACAGAGATATCTTTAGTCATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATTAACGCTGCAACTTTGGCACTAGCTGATGCTGGAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCACTCCTCTGCTAGATCTGAATTATGTGGAAGATAGTGCTGGTGGCCCTGATGTCACTGTTGGCTTTCTACCTAAGTTGGATAAAGTCACTCTTCTTCAGATGGATTCTAAATTACCTGTTGATATATTTGAGAATGTCATGCAACTTGCAATCGAGGGCTGCAAAGCCGTAGCTAATTACATTCGAGAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTCGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAAGAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

Homology

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BLAST of Cp4.1LG01g04290 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 5.4e-96
Identity = 182/228 (79.82%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IRE+
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy Swiss-Prot
Match: Q921I9 (Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3)

HSP 1 Score: 246.1 bits (627), Expect = 5.4e-64
Identity = 120/221 (54.30%), Postives = 166/221 (75.11%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +RS
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV 221
            + +  LP   ++ LL+MDS+L  D  E V++ A +  + V
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV 224

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy Swiss-Prot
Match: Q9NPD3 (Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 242.7 bits (618), Expect = 6.0e-63
Identity = 118/221 (53.39%), Postives = 166/221 (75.11%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R+
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV 221
            + +  LP   ++ LL+MD++L  D  E V++ A +  + V
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDV 224

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy Swiss-Prot
Match: Q7YRA3 (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 241.5 bits (615), Expect = 1.3e-62
Identity = 118/221 (53.39%), Postives = 165/221 (74.66%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQ-NRS 60
           +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R+
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAV 221
            + +  LP   ++ LL+MD++L  D  E V++ A    + V
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDV 224

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy Swiss-Prot
Match: Q5JIR6 (Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.0e-54
Identity = 114/240 (47.50%), Postives = 159/240 (66.25%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ++ +   G R+DGR+  E+R I+ E+G +  ADGSA  E G  KVLAAVYGPRE+  +  
Sbjct: 8   LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR  +E  +L H+ PR+ ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 127

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           +++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  D
Sbjct: 128 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 187

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIRE-MDEVLASVAETIK 240
           V V  +P  + +TLLQMD  L  D F   ++LAI+G KAV    RE + E    +A+ ++
Sbjct: 188 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQEVE 246

[Close]

BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: XP_022941604.1 (exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_022987997.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_023513826.1 exosome complex component RRP41 homolog [Cucurbita pepo subsp. pepo] >KAG6600116.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030788.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 442 bits (1136), Expect = 3.16e-154
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: XP_038891797.1 (exosome complex component RRP41 homolog [Benincasa hispida])

HSP 1 Score: 434 bits (1117), Expect = 2.47e-151
Identity = 219/227 (96.48%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMD+KLP+D+FENVMQLAIEGCKA+A+YIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFENVMQLAIEGCKAIASYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 429 bits (1102), Expect = 4.74e-149
Identity = 216/227 (95.15%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           +QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 LQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKAVA+YIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: XP_030944786.1 (exosome complex component RRP41 homolog [Quercus lobata] >XP_030944787.1 exosome complex component RRP41 homolog [Quercus lobata] >XP_030944788.1 exosome complex component RRP41 homolog [Quercus lobata])

HSP 1 Score: 426 bits (1096), Expect = 3.88e-148
Identity = 213/227 (93.83%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+Q
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRTQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSSGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMDSKLP+DIFENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPIDIFENVMQLAIEGCKAIANYIREI 227

[Close]

BLAST of Cp4.1LG01g04290 vs. NCBI nr
Match: XP_010661873.1 (PREDICTED: exosome complex component RRP41 homolog [Vitis vinifera] >XP_010661874.1 PREDICTED: exosome complex component RRP41 homolog [Vitis vinifera] >XP_034709227.1 exosome complex component RRP41 homolog [Vitis riparia] >CAN81194.1 hypothetical protein VITISV_022853 [Vitis vinifera] >CBI40470.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 424 bits (1090), Expect = 3.18e-147
Identity = 213/227 (93.83%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVG LPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy TrEMBL
Match: A0A6J1JKC7 (exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485363 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 1.53e-154
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy TrEMBL
Match: A0A6J1FNX1 (exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446911 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 1.53e-154
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy TrEMBL
Match: A0A6J1DWZ5 (exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111024273 PE=4 SV=1)

HSP 1 Score: 429 bits (1102), Expect = 2.29e-149
Identity = 216/227 (95.15%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           +QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 LQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKAVA+YIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy TrEMBL
Match: A0A7N2MX64 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 426 bits (1096), Expect = 1.88e-148
Identity = 213/227 (93.83%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+Q
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRTQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSSGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVGFLPKLDKVTLLQMDSKLP+DIFENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPIDIFENVMQLAIEGCKAIANYIREI 227

[Close]

BLAST of Cp4.1LG01g04290 vs. ExPASy TrEMBL
Match: A5BIU1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g01420 PE=4 SV=1)

HSP 1 Score: 424 bits (1090), Expect = 1.54e-147
Identity = 213/227 (93.83%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           MEFVSPEGLRLDGRRPMEMRQIR EIGAV+KADGSA FEMGNTKV+AAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 227
           VTVG LPKLDKVTLLQMD+KLP+DIFENVMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 352.4 bits (903), Expect = 3.8e-97
Identity = 182/228 (79.82%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IRE+
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 352.4 bits (903), Expect = 3.8e-97
Identity = 182/228 (79.82%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60
           ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREM 228
           DVTVG LPKLDKV+LLQMD+KLP++ FE V  LA EGCKA+A  IRE+
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227

[Close]

BLAST of Cp4.1LG01g04290 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 208.4 bits (529), Expect = 8.9e-54
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 226 EMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 285
           +MDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN
Sbjct: 40  QMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 99

Query: 286 NKINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY 329
           NKINWALKDKQEFI+IIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct: 100 NKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Cp4.1LG01g04290 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 98.6 bits (244), Expect = 9.9e-21
Identity = 64/227 (28.19%), Postives = 112/227 (49.34%), Query Frame = 0


Query: 10  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVR 69
           R DGR   + R    + GAVS A GSA  E GNTKV+ +V+GPRE   ++   S+   + 
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 93

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGG 129
           C  +  NF++    +         E S ++ + +E  I+    P++ +D+F  VL++ G 
Sbjct: 94  CNVSYTNFASPTLGQ----GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 153

Query: 130 TRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGFLPKL 189
             S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P  
Sbjct: 154 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 213

Query: 190 DKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREMDEVLASVAE 237
            ++T L +  +         MQL ++    +   +R+  +  AS ++
Sbjct: 214 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQSASASD 255

[Close]

BLAST of Cp4.1LG01g04290 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-13
Identity = 55/188 (29.26%), Postives = 91/188 (48.40%), Query Frame = 0


Query: 10  RLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQQMSNQALVR 69
           R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++         
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEK----- 64

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIFVQVLQADG 129
                A F    + +  +  +   E  +++++T++  C+LT + P +   + +QV+  DG
Sbjct: 65  -----ACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLT-VNPNTTTSVIIQVVHDDG 124

Query: 130 GTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PD 189
                 INAA  AL DAGIPM+ + V  C     N   +LD N +E+           P+
Sbjct: 125 SLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPN 181

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SP08	5.4e-96	79.82	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41...	[more]
Q921I9	5.4e-64	54.30	Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3	[more]
Q9NPD3	6.0e-63	53.39	Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3	[more]
Q7YRA3	1.3e-62	53.39	Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3	[more]
Q5JIR6	3.0e-54	47.50	Exosome complex component Rrp41 OS=Thermococcus kodakarensis (strain ATCC BAA-91...	[more]

BLAST of Cp4.1LG01g04290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941604.1	3.16e-154	99.56	exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exo...	[more]
XP_038891797.1	2.47e-151	96.48	exosome complex component RRP41 homolog [Benincasa hispida]	[more]
XP_022157614.1	4.74e-149	95.15	exosome complex component RRP41 homolog [Momordica charantia]	[more]
XP_030944786.1	3.88e-148	93.83	exosome complex component RRP41 homolog [Quercus lobata] >XP_030944787.1 exosome...	[more]
XP_010661873.1	3.18e-147	93.83	PREDICTED: exosome complex component RRP41 homolog [Vitis vinifera] >XP_01066187...	[more]

BLAST of Cp4.1LG01g04290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JKC7	1.53e-154	99.56	exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485...	[more]
A0A6J1FNX1	1.53e-154	99.56	exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1DWZ5	2.29e-149	95.15	exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A7N2MX64	1.88e-148	93.83	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A5BIU1	1.54e-147	93.83	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0046g01420 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g04290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61620.1	3.8e-97	79.82	3'-5'-exoribonuclease family protein	[more]
AT3G61620.2	3.8e-97	79.82	3'-5'-exoribonuclease family protein	[more]
AT5G08290.1	8.9e-54	98.06	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT4G27490.1	9.9e-21	28.19	3'-5'-exoribonuclease family protein	[more]
AT3G46210.1	1.2e-13	29.26	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 193..322 e-value: 9.5E-60 score: 214.5
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 226..322 e-value: 4.3E-45 score: 152.7
IPR004123	Dim1 family	CDD	cd02954	DIM1	coord: 225..309 e-value: 1.25918E-52 score: 167.087
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 151..215 e-value: 3.9E-7 score: 30.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 18..148 e-value: 1.6E-37 score: 128.9
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..234 e-value: 8.8E-81 score: 272.9
None	No IPR available	PANTHER	PTHR11953:SF0	EXOSOME COMPLEX COMPONENT RRP41	coord: 1..227
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..227
None	No IPR available	CDD	cd11370	RNase_PH_RRP41	coord: 8..231 e-value: 2.15813E-144 score: 404.618
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 7..175
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 225..323
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 148..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04290.1	Cp4.1LG01g04290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0009022	tRNA nucleotidyltransferase activity