Cp4.1LG01g03440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g03440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pre-mRNA-splicing factor CWC25 homolog
Location	Cp4.1LG01: 1852375 .. 1859327 (-)
RNA-Seq Expression	Cp4.1LG01g03440
Synteny	Cp4.1LG01g03440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATTTTCTGCTTATCAGTTGGATTTCTTTCAGATTACTAGTGGGTCAAACATTCGCGGGCTAGGAGAGGCGGCGGCAGCGACGGGGGCGATCCGATTCCCCAATCCGAATCTCGAACTTCTTCCTCACAAAACCACAGCGCTGGTGGTTAAGAGTCCGATTCATAAGTGAAACTCGGTTAGAGACATGGCGTTGAAGTTCTTGAACAAGAAAGGATGGCACACCGGCAGTCTCCGGAACATAGAGAATGTCTGGAAGGCGGAGCAGAAGCACGAGGCCGAGCAGAAGAAGTTGGAAGAGCTCCGTAAACAGATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTTCAAGAACAGGCCGGCCTCGTTCCGTATGTGTTTCCTTATGTCTTTCTTCTATCGTCTTGTTTACAGATCGAATTTTATATTGTATAGGTAGTTTGTGAGTTTCAAATTCAATTCGATCTCTGAGTAGATAAGGATTGAAAATGTGTCCTCGGTTAGGATTAGGGTTAGTGTTAGGGTCTAATTTGTTCGATCGATTTGGCTAATATTCGGTTTTTGGTCGATATGGCGTTTCAGGAAGCAGGAGAGATTGGAGTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGCCAGCGAGTCCGATGGATTTAAGAGTCTCGAAACCCTACCTATTACATCTACTCCCGCGGCTTCCTCTGACCCATCTAGTTCCAAGGTACTGTTACACTCGTTGTCTCTGTTCTATTAATTTGTGTGCTTTGGCTATGTCTTCGGTGCTCAATCATGATTTTGTTGCATTTTTGTGTTGTTTTTACAGGAAGCCGCTGTCCCAGGAGCTCTGTTTGTGGATAAACTTCCTTCTGCTAATGACGCATGGAGGAAGCTTCATTCTGATCCTTTGCTTATCATTCGACAACGTGAGCAACAAGCTCTTGCACGCGTTAAAAACAATCCTATTCAGATGGCTATGATTCGCAAGACTGTAAGTTCCAATTTTCCCTGCTGTTTTATTTTCTCCTTCATCGCAAAACAATCCTACAATCCTATTAAGCATTGGCTGTGGAAATTATATGGAAATATTCTTCTTCCATTCATTCTTGTCCAGTGAAACTCTCTAAAACTTATATGTTAGCATGTCTATGGACACTTGTTGGTTGTGTGATGAAACAGATTAAGTCCACTTGTCCGCTTTGGCCTGTTACGTATCGTTATCAGCCTCACAGTTTTAAAAGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACTCTTATGAAAAAAAAAAATGCTTTGTTCCCCTCTCCAATTGACGTGAGATCTCAATCCACTCTCTTTCGGGGTCCAGTGCCCTTGCTGGCACTCGTTCCCTCCCCTAGCATAACGGGCCAAAGCGGACAATATCAGCTAGCAGTGGGCTTGGGCTTTTACATGCAAGCTCTTTCCTTTTTCGATTTGAAGAATTGATTTTGAGGGTTTTTTTTTCTCTCTCCATACATATTTATAGGTTGAAGGGGAAAAACACAAGGAAAAGAAACCTGATCATAAAAGAGATCGAAAGAAGCAGCGACATAGTAAATCTAAACATTTTTCTCCCGAACGAGATCATGATTCTGAAGATGCCAGCCCTGAGAGGCAGAGAAGGAAACATGGTCATGAAAAGAGTTCAAAACATGATGATAATTCTTATTCCGAAGATAGGAGGAGAACTGATTATAAGAATGAGAGAGATCATAAAGATGATCGCGACAAGGGTTCAAGACATGATGATCATTCTTATCCCGAAGATAGGAGTAGAACTAATTATAAGAATGAGAGGGATCATAAAGACGATCGTGACAAGAGTTCAAGACATGATGATCATTCTTATTCTGAAGATAGGAGGAGAACTGATTATAAGAACGAGAGAGATCATAAAGATGATCGTGACAAGAGTTCAAGACATGATGATCACTCTTATTCAGAAGATAGAAGGAGAAGAAATGATTATAAGAACGAGAAGGACCATGACAGAGGCTCGAAATATGCTGCAGCACAAACGACGTACGATCAGTCAGATCGAAAGTCATCCAAAATCAATTCTCATGATTCTACAGAGAGACATCATGACAGATCAAAGAGATCGAGAGATTCTTATGCTAACAACGAAAAGGTGAGCAGAAGAGTGGGGGAATCGAGATCTTATGAACCCAATGCTTCTGAAACACCTCATGAGTCGCGCCATAAGCACCGTAGGCCTGCTACAAAGCTTTCAGAAGAAGAGCGTGCTGCTAGGCTGCGTGAGATGCAGCAGGATGCCGAGTTACATGAAGAGCAAAGATGGAAGCGTTTGAAGCAGGCAGCTGAGGATGATGCACTGGAAGCCAAACAAAATGCAGCAGTGCCCTCAAGCAAAAATTTCTTGGACGCTGCTCAGAAAAGCATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGTAGGACGTATTATTCACAGGGTAAATCTGATATTGAAGCCAATGCTTTTCGACGGTAATGCACATCACCTATACACTTTGCTTATGATTATTGTATAACATCCTTTCTTAGTGTTTCTGCTGCTGTTGACTCTGAAGAATTGCTTCTTGAAAACATTTGGAGTTCATGTATTTGTATTATCTTTTCAATCCATTAGTATTATACTTATCTATAGTGAAATTTGTACTAAATTAATAGCAAAATTGTGATCATTATGAAACAAAAGTCATTTCATATTACTTTTTGATCTCGTTTACATAATTCTTGATGATTTTTTGTCCCATGTCTTTCAGCACCATTCCTCAAGGCTAAATGTTCATGTTTTTTTTTTTTTTTTCAAATATCAGAAGGATGGAGTGATAGTATAGTCCACCGTCGATGAAGCCGAAGGTTTTGGAGGCTTTCGATGCATCGGTCGAATGATCGAGCTGGAGTAATAATATTGCTTTGGGCACTTGAAGGATTAAGACGTGTGGAAATACTCAAGGAAAGCAAAAGTGAACGTAATTTACTAAGTTGTTCCTACTTACAAGCTTAAAACGAATCGGGACAAAAGAAATAAGACAAACACATAAAAGTATAGCTACTCTTGTGTGTGGGGCATTAAATTAGAAGAACAACGCATGTCGGTCTCCCAACTTCGTTAGAATGCATTGTTTGTGTGTTTGTTGAGTGCATGAAAATTAAGTCTCACTATCTCACTTGTTTTACGCTCACTTCCTTTTTTTTATTTTCATCGCAACATATCCAAATTATATTTTTATCTATACTAACTCTAGAGTACACGATCGATATAAATTTTGATTGTAAAATGTCTAGAATTATTATAATTGTTTTCTTGTGGGTAAATCCTATAACTTTTCAGGTAGTATTTGCTAGCGTGTTGATTTATATTTGAGCCGGCGTACTGGACGACTACTACCTTTTGTGTGATGCTATCATTTCATCGCTTCATTTTCTTGTCAATTGTACCCGCTTCATCATTACTTTACCAATGCGTACACCGTGTTCACAACGACGAGTTTGTCCACGTCACCTCTTTAAAATCATATATATATATATATATATATATATTGTTGGAAGTACTTCACCTTTTAAGATAAGCAATGCACTGACTAAATGAAGCGTCAACATCTCAGTTAAATGGGCCAGGGTCCACTAGGCCCAGAATGACAGGTCCACATAAAAAGTAAAATATTTGTATTTTCAAATCCCATCCGTGAAAGGGTTGAACTGCGAATATTTAGAAATTAAGGGAAAATAAGAAATTTCAGAAAGTTCTGTGGTGAAAAACGCGAATTTCAAACATTTTTCTCGTTCTTCAGTTCTACAAATCTTTATTTCATCTTCTGCCTTTTGTCGTCGACTTCATCACTCTCTTCCTTTTCGTCTCTCTCGTTTCTGCCCTTTGGATCGCCCACCGGTCTGAATTACCTTGACCGGTTCTAATCCGGTTGCGCTTTTCCCCTTTCTAGATCAGCATTCCACCAACAATCATGAATCCTGAGTAGTAAGTCGCGTTATTGATCGAATCTTTTTCAAGCGATTCCCGTATGTGAATAACTTTTGATTTTGTTTTGTTTCGTTTCGTTTGGCGACAATGATCCATTAGGATAGTTTCAATAACTAGGTTTCAGTTTTTCTTTCTCCTTTGTTTGATGCTTGTTTTTTTTTATATACATATTCTGTCAATTTAAGGATTAGATCTGTGATTCTCATTTTTCTTTGTAATGAACGATTTTCTCTTGAGGTGGATGAATTCGATTGTTTTTGGATTGATCGAATCTTCTAATTCAAAGCTCTTGTTCGGTTAAGGAAAACAGAATTCAGAGCGTTCTTATTTTTGATTGGTCGACAAACCATTGAATTGAATTGAATTTTATGTTGATAGGAGGGGGCCAATTACCTTTTAGTTTCTCTTAAATTCAAAACGTATATATAATACCCTTGAAATTCTATTGTTTTTCCACCAATTGGTCTCCCTAAAATGTTTAGTGTTGAGATTATCTATGAAAATTTTGCCTTTTCTGAAAATTTCCAACTTGACGTCTTCATGGATGGCATTTTTTTTTCTTTGTTCTGTGTATGGATATGGAATTTGGTTCTCTTGGATGCGAAGGCATTAGGCATCATATATTTTTTATAAATAAATGAAAATTTGATAAGTTACAATTCTCTTTGTCCCTACTGGTTTGCTTTTTTCTAATTTGCCTTTTCAGTGTTTGAATTATTAACATTGTTCGTCGAGCTGGACGACTGCTTGCTTTGATCTTTAGTTTAAGTTTATTTTATTCAAGCAAATGATTATTAATTAAATCAGTTGCTTAAGAATGTAAAACAGATACCCAGATAAATTTTCATCGTAGGCTGTGGATGTTCATGATTGTAACTTTTAAGTAATTGAGTTTGTAACATTTGAGTTTTTTTATTTTTCTAATTTGGTTTTCTCTGATAGTGACTACTTGTTCAAGCTCTTGCTTATTGGGGACTCTGGAGTTGGCAAATCATGTCTTCTTTTGAGATTTGCTGTAAGATTCATTACTCTATCATCGTCTGTTCAACATTTGTAACTCTTAGGTTACACCCTTCATCTTCATTAAAATCGATTTTTGATTACCTCTAGATTATTATGTTATGGATTACTGAATGTTGATACATAGTGCTTGTTATATATCCATTCGAACTGCGTAGATCCGAAGTGGCAAAGCAAATGAAATGTATGTTTGAATTAGAAAGTTTCGAAAGTTTTTTCGAACAAGAGATGAAGAGTTGGGAATTATATATTGTAGTGGAAGGTTTCGGATCCGATAGCTCCTTGATCTTTTTCACTATTGTGATAATTGTGGCATGACATCTCATGATACTGAAGAAATTGCTTTCTTGTTCTTCCATTTTGACAGTTATTAAATTGCCTACTTGCCAGGGGTTTTTCTTGTTTGGATAGTTGCTTTCTTGGAGTTTCATCTACTGATTGGTTTCTTTTGTATCTTATATACAGGATGACTCATATCTGGATAGTTATATTAGTACCATTGGAGTTGATTTTGTAAGCTTTTATGATCCTTTAAGTTCAAACCCATTCTGTTTTAATTATGTATCTGCGCTCTGATCACTTAAGGATTTTGATGTTCTAGAAAATACGCACCGTGGAGCAGGATGGAAAGACAATTAAACTCCAAATTGTGAGACTTTCTCTCTACACGTGCGCACACACATGTATATATATATTGTGACACACACATACATACATAGGCTTTCTGTAAGTCCTCTTTTCTGACTTCTGGAGTATTCAGTGGGATACTGCAGGACAGGAGCGTTTTAGGACCATCACCAGTAGCTACTACCGTGGGGCACATGGCATAATAGTAAGTCTTATGCATTATAGCTCCATTATAGCAACTTTTCTCTAATCACAGAACTCTGAGTTTGTTTCCCTCGTTGGTTCAGATTGTTTATGATGTAACAGACCAGGAGAGTTTTGAAAATGTTAAGCAATGGTTAAACGAAATTGACCGTTATGCAAGTGAAAACGTAAACAAGCTTCTAGTTGGCAATAAGTGTGATCTTCCTAATAAAGTAGTGTCCTATGAATCAGCAAAGGTAAAAGCAATTTGTCGACTTAAATTACTGATAGCCTTGGAGGCATGAGAAACCGAGTAAAATTCTTTTGATGATCTCACATGTTTGTAGGCTTTTGCTGATGAGGTTGGGATCCCATTTATGGAGACAAGTGCAAAAGATGCTACCAATGTAGAACAGGCATTTATGGCCATGACTGCTGACATTAAAAATAGGTATATCTCCCTCTCTTGTGTACTAGTGGGCAGAATTATGACTCTAGATTTCTACGAAAATAATCATTTAAAACAGTATACAGTAGCGATTATAGGTTAAGTAGCAATCTAGGGTCGTTACACAATGACACAAAAAAAAAGAACCAAATATTTCAACTTAGTTTCGTTTTGTAGACCACTTGAACAATTACTAATCTTCATGCTCTGCATCCAGGATGGCAAGTCTGCCTGCAAACAATGCGAGGCCACCTACGGTGCAGCTACAGGGGCAACCCGTCAACCAGAAGGGTGGATGTTGTTCTTAGTTGGTTGTTTCTGCCATTGCAAGTGTGCATTGTGCACGTAATATCAAGTGCATTCGAATCTCTCTCTATAAAGTATCTGAAATCCCATTCATTTCAAATAGACCTTGAATTGTCACTCTATACCTTTCTGTATTATCAAAGCAGTAGTATTTCCTTTTTCTTCTTTCCAATACCTGTTTTAAGCTGCCGTGTAGGGAACATTTAGAGGTATAGTTCAAGCCATCTCTCAGTTTATTTGCCTCATTAATATTTGTTTGGAGAATGCTTGGATGCTTTATGTTTCTGACTTTAGATAGCAAATGGTAGAGCTTAAGAATGCTCAAATTTGTCTTCT

mRNA sequence

AATCATTTTCTGCTTATCAGTTGGATTTCTTTCAGATTACTAGTGGGTCAAACATTCGCGGGCTAGGAGAGGCGGCGGCAGCGACGGGGGCGATCCGATTCCCCAATCCGAATCTCGAACTTCTTCCTCACAAAACCACAGCGCTGGTGGTTAAGAGTCCGATTCATAAGTGAAACTCGGTTAGAGACATGGCGTTGAAGTTCTTGAACAAGAAAGGATGGCACACCGGCAGTCTCCGGAACATAGAGAATGTCTGGAAGGCGGAGCAGAAGCACGAGGCCGAGCAGAAGAAGTTGGAAGAGCTCCGTAAACAGATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTTCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAGAGATTGGAGTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGCCAGCGAGTCCGATGGATTTAAGAGTCTCGAAACCCTACCTATTACATCTACTCCCGCGGCTTCCTCTGACCCATCTAGTTCCAAGGAAGCCGCTGTCCCAGGAGCTCTGTTTGTGGATAAACTTCCTTCTGCTAATGACGCATGGAGGAAGCTTCATTCTGATCCTTTGCTTATCATTCGACAACGTGAGCAACAAGCTCTTGCACGCGTTAAAAACAATCCTATTCAGATGGCTATGATTCGCAAGACTGTTGAAGGGGAAAAACACAAGGAAAAGAAACCTGATCATAAAAGAGATCGAAAGAAGCAGCGACATAGTAAATCTAAACATTTTTCTCCCGAACGAGATCATGATTCTGAAGATGCCAGCCCTGAGAGGCAGAGAAGGAAACATGGTCATGAAAAGAGTTCAAAACATGATGATAATTCTTATTCCGAAGATAGGAGGAGAACTGATTATAAGAATGAGAGAGATCATAAAGATGATCGCGACAAGGGTTCAAGACATGATGATCATTCTTATCCCGAAGATAGGAGTAGAACTAATTATAAGAATGAGAGGGATCATAAAGACGATCGTGACAAGAGTTCAAGACATGATGATCATTCTTATTCTGAAGATAGGAGGAGAACTGATTATAAGAACGAGAGAGATCATAAAGATGATCGTGACAAGAGTTCAAGACATGATGATCACTCTTATTCAGAAGATAGAAGGAGAAGAAATGATTATAAGAACGAGAAGGACCATGACAGAGGCTCGAAATATGCTGCAGCACAAACGACGTACGATCAGTCAGATCGAAAGTCATCCAAAATCAATTCTCATGATTCTACAGAGAGACATCATGACAGATCAAAGAGATCGAGAGATTCTTATGCTAACAACGAAAAGGTGAGCAGAAGAGTGGGGGAATCGAGATCTTATGAACCCAATGCTTCTGAAACACCTCATGAGTCGCGCCATAAGCACCGTAGGCCTGCTACAAAGCTTTCAGAAGAAGAGCGTGCTGCTAGGCTGCGTGAGATGCAGCAGGATGCCGAGTTACATGAAGAGCAAAGATGGAAGCGTTTGAAGCAGGCAGCTGAGGATGATGCACTGGAAGCCAAACAAAATGCAGCAGTGCCCTCAAGCAAAAATTTCTTGGACGCTGCTCAGAAAAGCATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGTAGGACGTATTATTCACAGGGTAAATCTGATATTGAAGCCAATGCTTTTCGACGTGACTACTTGTTCAAGCTCTTGCTTATTGGGGACTCTGGAGTTGGCAAATCATGTCTTCTTTTGAGATTTGCTGATGACTCATATCTGGATAGTTATATTAGTACCATTGGAGTTGATTTTGAGCGTTTTAGGACCATCACCAGTAGCTACTACCGTGGGGCACATGGCATAATAATTGTTTATGATGTAACAGACCAGGAGAGTTTTGAAAATGTTAAGCAATGGTTAAACGAAATTGACCGTTATGCAAGTGAAAACGTAAACAAGCTTCTAGTTGGCAATAAGTGTGATCTTCCTAATAAAGTAGTGTCCTATGAATCAGCAAAGGCTTTTGCTGATGAGGTTGGGATCCCATTTATGGAGACAAGTGCAAAAGATGCTACCAATGTAGAACAGGCATTTATGGCCATGACTGCTGACATTAAAAATAGGATGGCAAGTCTGCCTGCAAACAATGCGAGGCCACCTACGGTGCAGCTACAGGGGCAACCCGTCAACCAGAAGGGTGGATGTTGTTCTTAGTTGGTTGTTTCTGCCATTGCAAGTGTGCATTGTGCACGTAATATCAAGTGCATTCGAATCTCTCTCTATAAAGTATCTGAAATCCCATTCATTTCAAATAGACCTTGAATTGTCACTCTATACCTTTCTGTATTATCAAAGCAGTAGTATTTCCTTTTTCTTCTTTCCAATACCTGTTTTAAGCTGCCGTGTAGGGAACATTTAGAGGTATAGTTCAAGCCATCTCTCAGTTTATTTGCCTCATTAATATTTGTTTGGAGAATGCTTGGATGCTTTATGTTTCTGACTTTAGATAGCAAATGGTAGAGCTTAAGAATGCTCAAATTTGTCTTCT

Coding sequence (CDS)

ATGGCGTTGAAGTTCTTGAACAAGAAAGGATGGCACACCGGCAGTCTCCGGAACATAGAGAATGTCTGGAAGGCGGAGCAGAAGCACGAGGCCGAGCAGAAGAAGTTGGAAGAGCTCCGTAAACAGATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTTCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAGAGATTGGAGTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGCCAGCGAGTCCGATGGATTTAAGAGTCTCGAAACCCTACCTATTACATCTACTCCCGCGGCTTCCTCTGACCCATCTAGTTCCAAGGAAGCCGCTGTCCCAGGAGCTCTGTTTGTGGATAAACTTCCTTCTGCTAATGACGCATGGAGGAAGCTTCATTCTGATCCTTTGCTTATCATTCGACAACGTGAGCAACAAGCTCTTGCACGCGTTAAAAACAATCCTATTCAGATGGCTATGATTCGCAAGACTGTTGAAGGGGAAAAACACAAGGAAAAGAAACCTGATCATAAAAGAGATCGAAAGAAGCAGCGACATAGTAAATCTAAACATTTTTCTCCCGAACGAGATCATGATTCTGAAGATGCCAGCCCTGAGAGGCAGAGAAGGAAACATGGTCATGAAAAGAGTTCAAAACATGATGATAATTCTTATTCCGAAGATAGGAGGAGAACTGATTATAAGAATGAGAGAGATCATAAAGATGATCGCGACAAGGGTTCAAGACATGATGATCATTCTTATCCCGAAGATAGGAGTAGAACTAATTATAAGAATGAGAGGGATCATAAAGACGATCGTGACAAGAGTTCAAGACATGATGATCATTCTTATTCTGAAGATAGGAGGAGAACTGATTATAAGAACGAGAGAGATCATAAAGATGATCGTGACAAGAGTTCAAGACATGATGATCACTCTTATTCAGAAGATAGAAGGAGAAGAAATGATTATAAGAACGAGAAGGACCATGACAGAGGCTCGAAATATGCTGCAGCACAAACGACGTACGATCAGTCAGATCGAAAGTCATCCAAAATCAATTCTCATGATTCTACAGAGAGACATCATGACAGATCAAAGAGATCGAGAGATTCTTATGCTAACAACGAAAAGGTGAGCAGAAGAGTGGGGGAATCGAGATCTTATGAACCCAATGCTTCTGAAACACCTCATGAGTCGCGCCATAAGCACCGTAGGCCTGCTACAAAGCTTTCAGAAGAAGAGCGTGCTGCTAGGCTGCGTGAGATGCAGCAGGATGCCGAGTTACATGAAGAGCAAAGATGGAAGCGTTTGAAGCAGGCAGCTGAGGATGATGCACTGGAAGCCAAACAAAATGCAGCAGTGCCCTCAAGCAAAAATTTCTTGGACGCTGCTCAGAAAAGCATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGTAGGACGTATTATTCACAGGGTAAATCTGATATTGAAGCCAATGCTTTTCGACGTGACTACTTGTTCAAGCTCTTGCTTATTGGGGACTCTGGAGTTGGCAAATCATGTCTTCTTTTGAGATTTGCTGATGACTCATATCTGGATAGTTATATTAGTACCATTGGAGTTGATTTTGAGCGTTTTAGGACCATCACCAGTAGCTACTACCGTGGGGCACATGGCATAATAATTGTTTATGATGTAACAGACCAGGAGAGTTTTGAAAATGTTAAGCAATGGTTAAACGAAATTGACCGTTATGCAAGTGAAAACGTAAACAAGCTTCTAGTTGGCAATAAGTGTGATCTTCCTAATAAAGTAGTGTCCTATGAATCAGCAAAGGCTTTTGCTGATGAGGTTGGGATCCCATTTATGGAGACAAGTGCAAAAGATGCTACCAATGTAGAACAGGCATTTATGGCCATGACTGCTGACATTAAAAATAGGATGGCAAGTCTGCCTGCAAACAATGCGAGGCCACCTACGGTGCAGCTACAGGGGCAACCCGTCAACCAGAAGGGTGGATGTTGTTCTTAG

Protein sequence

MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAGLVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVDKLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRDRKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDHKDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDHKDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDSTERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAARLREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSSTIEESIRRRTYYSQGKSDIEANAFRRDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDLPNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPTVQLQGQPVNQKGGCCS

Homology

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BLAST of Cp4.1LG01g03440 vs. ExPASy Swiss-Prot
Match: Q9SEH3 (Ras-related protein RABD2c OS=Arabidopsis thaliana OX=3702 GN=RABD2C PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-76
Identity = 150/196 (76.53%), Postives = 162/196 (82.65%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 626 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 679
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  ++PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPT 185

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy Swiss-Prot
Match: P28188 (Ras-related protein RABD2a OS=Arabidopsis thaliana OX=3702 GN=RABD2A PE=1 SV=3)

HSP 1 Score: 286.6 bits (732), Expect = 7.5e-76
Identity = 150/197 (76.14%), Postives = 163/197 (82.74%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGIIIVYDVTD+ESF NVKQWL+EIDRYAS+NVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 125

Query: 626 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPA-NNARPP 679
             N+ + YE+AKAFADE+GIPFMETSAKDATNVEQAFMAM+A IK RMAS PA NNARPP
Sbjct: 126 TENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPP 185

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy Swiss-Prot
Match: Q9FPJ4 (Ras-related protein RABD2b OS=Arabidopsis thaliana OX=3702 GN=RABD2B PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.2e-75
Identity = 150/196 (76.53%), Postives = 161/196 (82.14%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDL 125

Query: 626 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 679
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  A+PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPT 185

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy Swiss-Prot
Match: Q05737 (GTP-binding protein YPTM2 OS=Zea mays OX=4577 GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.8e-75
Identity = 153/197 (77.66%), Postives = 162/197 (82.23%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGIIIVYDVTDQESF NVKQWLNEIDRYAS+NVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL 125

Query: 626 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLP-ANNARPP 679
             NKVV+ E+AKAFADE+GIPFMETSAK+ATNV+QAFMAM A IK+RMAS P A NARP 
Sbjct: 126 TANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPA 185

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy Swiss-Prot
Match: P40392 (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC1 PE=2 SV=2)

HSP 1 Score: 283.1 bits (723), Expect = 8.3e-75
Identity = 148/197 (75.13%), Postives = 160/197 (81.22%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 626 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNA-RPP 679
             N+VVSYE+ KA ADE+GIPF+ETSAKDATNVE+AFM M  +IKNRMAS PA NA +P 
Sbjct: 126 AENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPA 185

[Close]

BLAST of Cp4.1LG01g03440 vs. NCBI nr
Match: KAG7030865.1 (Ras-related protein RABD2a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1194 bits (3090), Expect = 0.0
Identity = 659/725 (90.90%), Postives = 667/725 (92.00%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNP+QMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPVQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK RHSKSKHFSPERDHDSEDASPERQRRKHGH+K+SKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSY E RSRTNYKNERDHKD+R+KSSRHDDHSYSED+RRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYSEGRSRTNYKNERDHKDEREKSSRHDDHSYSEDKRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSY EDRRRRNDYKNE+DHDRGSKYAA QTTYDQSDRKSSKINSHDS 
Sbjct: 301 KDDRDKSSRHDDHSYPEDRRRRNDYKNERDHDRGSKYAA-QTTYDQSDRKSSKINSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ERHHDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERHHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR----------------------------------- 540
           IEESIRRRTYYSQGKSDIEANAFRR                                   
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRRVSAAVDPEELLLVKTFGVHSTVDEAEGAGGFRCIG 540

Query: 541 ------DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF------ERFRTITS 600
                 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF      ERFRTITS
Sbjct: 541 RKIELDDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFWDTAGQERFRTITS 600

Query: 601 SYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDLPNKVVSYESA 660
           SYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNK DLPNKVVSYESA
Sbjct: 601 SYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKSDLPNKVVSYESA 660

Query: 661 KAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPTVQLQGQPVNQK 678
           KAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPTVQLQGQPVNQK
Sbjct: 661 KAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPTVQLQGQPVNQK 720

[Close]

BLAST of Cp4.1LG01g03440 vs. NCBI nr
Match: XP_023545202.1 (pre-mRNA-splicing factor cwc25-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 915 bits (2365), Expect = 0.0
Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH
Sbjct: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 505

[Close]

BLAST of Cp4.1LG01g03440 vs. NCBI nr
Match: XP_023545201.1 (pre-mRNA-splicing factor cwc25-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 915 bits (2365), Expect = 0.0
Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH
Sbjct: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 505

[Close]

BLAST of Cp4.1LG01g03440 vs. NCBI nr
Match: XP_022942620.1 (pre-mRNA-splicing factor cwc25-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 885 bits (2287), Expect = 0.0
Identity = 490/505 (97.03%), Postives = 497/505 (98.42%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK RHSKSKHFSPERDHDSEDASPERQRRKHGH+K+SKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRRNDYKNE+DHDRGSKYAA QTTYDQSDRKSSK +SHDS 
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAA-QTTYDQSDRKSSKTHSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ER+HDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERYHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRW+RLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 504

[Close]

BLAST of Cp4.1LG01g03440 vs. NCBI nr
Match: XP_022942621.1 (pre-mRNA-splicing factor cwc25-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 885 bits (2287), Expect = 0.0
Identity = 490/505 (97.03%), Postives = 497/505 (98.42%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK RHSKSKHFSPERDHDSEDASPERQRRKHGH+K+SKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRRNDYKNE+DHDRGSKYAA QTTYDQSDRKSSK +SHDS 
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAA-QTTYDQSDRKSSKTHSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ER+HDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERYHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRW+RLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 504

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy TrEMBL
Match: A0A6J1FWM5 (pre-mRNA-splicing factor cwc25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447603 PE=3 SV=1)

HSP 1 Score: 885 bits (2287), Expect = 0.0
Identity = 490/505 (97.03%), Postives = 497/505 (98.42%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK RHSKSKHFSPERDHDSEDASPERQRRKHGH+K+SKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRRNDYKNE+DHDRGSKYAA QTTYDQSDRKSSK +SHDS 
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAA-QTTYDQSDRKSSKTHSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ER+HDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERYHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRW+RLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 504

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy TrEMBL
Match: A0A6J1FPD3 (pre-mRNA-splicing factor cwc25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447603 PE=3 SV=1)

HSP 1 Score: 885 bits (2287), Expect = 0.0
Identity = 490/505 (97.03%), Postives = 497/505 (98.42%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK RHSKSKHFSPERDHDSEDASPERQRRKHGH+K+SKHDDNSYSEDRRRTDYKNERDH
Sbjct: 181 RKKHRHSKSKHFSPERDHDSEDASPERQRRKHGHDKTSKHDDNSYSEDRRRTDYKNERDH 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRRNDYKNE+DHDRGSKYAA QTTYDQSDRKSSK +SHDS 
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNERDHDRGSKYAA-QTTYDQSDRKSSKTHSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ER+HDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERYHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRW+RLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 504

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy TrEMBL
Match: A0A6J1JPY1 (pre-mRNA-splicing factor cwc25-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486415 PE=3 SV=1)

HSP 1 Score: 853 bits (2205), Expect = 3.43e-307
Identity = 479/505 (94.85%), Postives = 489/505 (96.83%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARV+NNPIQMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVRNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK R SK KHFSPERDHDSEDASPERQRRKHGH+KSSKHDDNSYSEDRR TDYKNERD 
Sbjct: 181 RKKHRRSKFKHFSPERDHDSEDASPERQRRKHGHDKSSKHDDNSYSEDRRITDYKNERDD 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSY EDR RT+YKNERDHKDDRDKSSRHDDH YS+DRRRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYSEDR-RTDYKNERDHKDDRDKSSRHDDHFYSKDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRR+DYKNE+++DRGSKYAA QTTYDQSD KSSK NSHDS 
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRDDYKNERNYDRGSKYAA-QTTYDQSDLKSSKTNSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ERHHDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERHHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRW+RLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 503

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy TrEMBL
Match: A0A6J1JPW9 (pre-mRNA-splicing factor cwc25-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486415 PE=3 SV=1)

HSP 1 Score: 853 bits (2205), Expect = 3.84e-307
Identity = 479/505 (94.85%), Postives = 489/505 (96.83%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKASESDGFKSLETLP TSTPAASSDPSSSKEAAVPGALFVD
Sbjct: 61  LVPKQERLDFLYESGLAVGKASESDGFKSLETLPSTSTPAASSDPSSSKEAAVPGALFVD 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           KLPSANDAWRKLHSDPLLIIRQREQQALARV+NNPIQMAMIRKTVEGEKHKEK PDHKRD
Sbjct: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVRNNPIQMAMIRKTVEGEKHKEKNPDHKRD 180

Query: 181 RKKQRHSKSKHFSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNERDH 240
           RKK R SK KHFSPERDHDSEDASPERQRRKHGH+KSSKHDDNSYSEDRR TDYKNERD 
Sbjct: 181 RKKHRRSKFKHFSPERDHDSEDASPERQRRKHGHDKSSKHDDNSYSEDRRITDYKNERDD 240

Query: 241 KDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNERDH 300
           KDDRDK SRHDDHSY EDR RT+YKNERDHKDDRDKSSRHDDH YS+DRRRTDYKNERDH
Sbjct: 241 KDDRDKSSRHDDHSYSEDR-RTDYKNERDHKDDRDKSSRHDDHFYSKDRRRTDYKNERDH 300

Query: 301 KDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSHDST 360
           KDDRDKSSRHDDHSYSEDRRRR+DYKNE+++DRGSKYAA QTTYDQSD KSSK NSHDS 
Sbjct: 301 KDDRDKSSRHDDHSYSEDRRRRDDYKNERNYDRGSKYAA-QTTYDQSDLKSSKTNSHDSA 360

Query: 361 ERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420
           ERHHDRSKR RDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR
Sbjct: 361 ERHHDRSKRERDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSEEERAAR 420

Query: 421 LREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480
           LREMQQDAELHEEQRW+RLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST
Sbjct: 421 LREMQQDAELHEEQRWRRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAEKGGSST 480

Query: 481 IEESIRRRTYYSQGKSDIEANAFRR 505
           IEESIRRRTYYSQGKSDIEANAFRR
Sbjct: 481 IEESIRRRTYYSQGKSDIEANAFRR 503

[Close]

BLAST of Cp4.1LG01g03440 vs. ExPASy TrEMBL
Match: A0A5A7TSZ0 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00360 PE=3 SV=1)

HSP 1 Score: 573 bits (1477), Expect = 5.23e-198
Identity = 357/511 (69.86%), Postives = 381/511 (74.56%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKL+ELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSLETLPITSTPAASSDPSSSKEAAVPGALFVD 120
           LVPKQERL+FLYESGLAVGKAS SDGFKSLETLP +ST AA+++PSSSKEAA PGALF D
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLPSSSTAAAATEPSSSKEAAAPGALFED 120

Query: 121 KLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHKRD 180
           K  SANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVE EKHK+K PD KR+
Sbjct: 121 KPHSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEVEKHKDKNPDDKRE 180

Query: 181 RKKQRHSKSKHF---SPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDYKNE 240
           RKK RHSKSK     SPERD+DSEDASPERQRRKH H                       
Sbjct: 181 RKKHRHSKSKRHKDSSPERDYDSEDASPERQRRKHDH----------------------- 240

Query: 241 RDHKDDRDKGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDRRRTDYKNE 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 RDHKDDRDKSSRHDDHSYSEDRRRRNDYKNEKDHDRGSKYAAAQTTYDQSDRKSSKINSH 360
                  DKSSRHD HS+SEDRR + D KNE+D DRGSKYAA +T+YDQSDRK+SK N  
Sbjct: 301 -------DKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAA-RTSYDQSDRKTSKSNPR 360

Query: 361 DST-ERHHDRSKRSRD--SYANNEKVSRRVGESRSYEPNASETPHESRHKHRRPATKLSE 420
           DS  +RHHDRSKR RD  S+ANN+K SRRVGE R YE +ASETP+ESRH+HRRP TKLSE
Sbjct: 361 DSAADRHHDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSE 419

Query: 421 EERAARLREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQKSMYGAE 480
           EERAARLREMQQDAELHEEQRWKRLK+AAEDDALEAKQNA VPSS+NFLD AQK MYGAE
Sbjct: 421 EERAARLREMQQDAELHEEQRWKRLKKAAEDDALEAKQNA-VPSSRNFLDTAQKRMYGAE 419

Query: 481 KGGSSTIEESIRRRTYYSQGKSDIEANAFRR 505
           KGGSSTIEESIRRRTYYSQGKS+IEANAFRR
Sbjct: 481 KGGSSTIEESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of Cp4.1LG01g03440 vs. TAIR 10
Match: AT2G44200.1 (CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor )

HSP 1 Score: 314.3 bits (804), Expect = 2.4e-85
Identity = 247/518 (47.68%), Postives = 322/518 (62.16%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLEELRKQIHEEKERQEFRLLQEQAG 60
           M +KFLNKKGWHTGSLRNIE VWKAEQK EAEQKKLEELR QI +E+ER EFR LQEQAG
Sbjct: 1   MGMKFLNKKGWHTGSLRNIETVWKAEQKQEAEQKKLEELRLQILQERERSEFRALQEQAG 60

Query: 61  LVPKQERLEFLYESGLAVGKASESDGFKSL--ETLPITSTPAASSDPSSSKEAAVPGALF 120
           L+P+QERLEFLY+SGLAVGK S S    S   E  P+  + A SS  S   + + PGALF
Sbjct: 61  LIPRQERLEFLYDSGLAVGKGSASGSGVSFQKEEQPLAKSEAGSS-ASEKPDQSAPGALF 120

Query: 121 VDKLPSANDAWRKLHSDPLLIIRQREQQALARVKNNPIQMAMIRKTVEGEKHKEKKPDHK 180
            +K  SAND+WRKLHSDPLL+IRQREQ+ALA++KNNP++MA+IRK+VE EK K K  D K
Sbjct: 121 EEKAQSANDSWRKLHSDPLLLIRQREQEALAKIKNNPVKMALIRKSVE-EKGKGKDGDTK 180

Query: 181 RDRKKQRHSKSKH----FSPERDHDSEDASPERQRRKHGHEKSSKHDDNSYSEDRRRTDY 240
             +KK +    KH     S +R    ED+  E   RK  H+K+S   D  Y  +R R+D 
Sbjct: 181 EHKKKHKRKSGKHQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHY--ERPRSDL 240

Query: 241 KNERDHKDDRD-----KGSRHDDHSYPEDRSRTNYKNERDHKDDRDKSSRHDDHSYSEDR 300
           ++E   ++ RD     + S  DD     +R  T+Y+  R   DD  K     D+ Y  +R
Sbjct: 241 EDESKGRESRDRHYEKRRSELDDGHKRRERHDTHYERRRSEMDDESKRRESRDNHY--ER 300

Query: 301 RRTDYKNERDHKDDRDKSSRHDDHSYSEDRRRR--NDYKNEKDHDRGSKYAAAQTTYDQS 360
           RR+D  +E   ++  DK          ++ +RR   D +   D D            D+ 
Sbjct: 301 RRSDLDDESKRRESHDKHFERQRSDLDDEYKRRESQDKRRRSDID------------DEP 360

Query: 361 DRKSSKINSHDSTERHHDRSKRSRDSYANNEKVSRRVGESRSYEPNASETPHESRHKHRR 420
            R+ ++ N     E++ +RS +      N +   +   + R  E   S  P+E +++ R+
Sbjct: 361 KRRDARPN-----EKYRNRSPKGGVERENLKSYGQE-DKKRKAEDLDSGKPNEYQNRRRK 420

Query: 421 PATKLSEEERAARLREMQQDAELHEEQRWKRLKQAAEDDALEAKQNAAVPSSKNFLDAAQ 480
             +KLSEEERAARL++MQ DAE+HEEQRW RLK+A E DA+EA +N  V + K+FLD A 
Sbjct: 421 GGSKLSEEERAARLKQMQMDAEVHEEQRWTRLKKADETDAVEADKN-KVSTGKSFLDDAN 480

Query: 481 KSMYGAEKGGSSTIEESIRRRTYYSQGKSDIEANAFRR 506
           KS+YG EKGGSSTIEES+RRR+YYSQ  +  E NAFRR
Sbjct: 481 KSVYGVEKGGSSTIEESVRRRSYYSQRGTAAEGNAFRR 493

[Close]

BLAST of Cp4.1LG01g03440 vs. TAIR 10
Match: AT4G17530.1 (RAB GTPase homolog 1C )

HSP 1 Score: 288.5 bits (737), Expect = 1.4e-77
Identity = 150/196 (76.53%), Postives = 162/196 (82.65%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 626 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 679
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  ++PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPT 185

[Close]

BLAST of Cp4.1LG01g03440 vs. TAIR 10
Match: AT1G02130.1 (RAS 5 )

HSP 1 Score: 286.6 bits (732), Expect = 5.3e-77
Identity = 150/197 (76.14%), Postives = 163/197 (82.74%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGIIIVYDVTD+ESF NVKQWL+EIDRYAS+NVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 125

Query: 626 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPA-NNARPP 679
             N+ + YE+AKAFADE+GIPFMETSAKDATNVEQAFMAM+A IK RMAS PA NNARPP
Sbjct: 126 TENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPP 185

[Close]

BLAST of Cp4.1LG01g03440 vs. TAIR 10
Match: AT5G47200.1 (RAB GTPase homolog 1A )

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-76
Identity = 150/196 (76.53%), Postives = 161/196 (82.14%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDL 125

Query: 626 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 679
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  A+PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPT 185

[Close]

BLAST of Cp4.1LG01g03440 vs. TAIR 10
Match: AT3G11730.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 234.2 bits (596), Expect = 3.1e-61
Identity = 126/198 (63.64%), Postives = 148/198 (74.75%), Query Frame = 0


Query: 506 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-------------------- 565
           DYLFKLLLIGDS VGKSCLLLRFADD+Y+DSYISTIGVDF                    
Sbjct: 6   DYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTA 65

Query: 566 --ERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 625
             ERFRTITSSYYRGAHGIIIVYD T+ ESF NVKQWL+EIDRYA+E+V KLL+GNK D+
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDM 125

Query: 626 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANN--ARP 678
             +KVVS E+ +A ADE+GIPF+ETSAKD+ NVEQAF+ +  +IK +M S    N  + P
Sbjct: 126 VESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGP 185

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEH3	2.0e-76	76.53	Ras-related protein RABD2c OS=Arabidopsis thaliana OX=3702 GN=RABD2C PE=1 SV=1	[more]
P28188	7.5e-76	76.14	Ras-related protein RABD2a OS=Arabidopsis thaliana OX=3702 GN=RABD2A PE=1 SV=3	[more]
Q9FPJ4	2.2e-75	76.53	Ras-related protein RABD2b OS=Arabidopsis thaliana OX=3702 GN=RABD2B PE=1 SV=1	[more]
Q05737	4.8e-75	77.66	GTP-binding protein YPTM2 OS=Zea mays OX=4577 GN=YPTM2 PE=2 SV=1	[more]
P40392	8.3e-75	75.13	Ras-related protein RIC1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC1 PE=2 S...	[more]

BLAST of Cp4.1LG01g03440 vs. NCBI nr


Match Name	Identity	Description
KAG7030865.1	90.90	Ras-related protein RABD2a [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023545202.1	100.00	pre-mRNA-splicing factor cwc25-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023545201.1	100.00	pre-mRNA-splicing factor cwc25-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022942620.1	97.03	pre-mRNA-splicing factor cwc25-like isoform X1 [Cucurbita moschata]	[more]
XP_022942621.1	97.03	pre-mRNA-splicing factor cwc25-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG01g03440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWM5	0.0	97.03	pre-mRNA-splicing factor cwc25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FPD3	0.0	97.03	pre-mRNA-splicing factor cwc25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JPY1	3.43e-307	94.85	pre-mRNA-splicing factor cwc25-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1JPW9	3.84e-307	94.85	pre-mRNA-splicing factor cwc25-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7TSZ0	5.23e-198	69.86	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG01g03440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44200.1	2.4e-85	47.68	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor	[more]
AT4G17530.1	1.4e-77	76.53	RAB GTPase homolog 1C	[more]
AT1G02130.1	5.3e-77	76.14	RAS 5	[more]
AT5G47200.1	1.5e-76	76.53	RAB GTPase homolog 1A	[more]
AT3G11730.1	3.1e-61	63.64	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 433..453
None	No IPR available	COILS	Coil	Coil	coord: 22..49
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 624..646 score: 43.85 coord: 509..530 score: 56.84
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 506..649 e-value: 1.8E-19 score: 80.7
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 509..649 e-value: 1.7E-79 score: 280.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 655..678
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..386
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 393..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 654..678
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 265..505 coord: 1..286
None	No IPR available	PROSITE	PS51419	RAB	coord: 504..678 score: 29.03511
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	SMART	SM01083	Cir_N_3	coord: 10..46 e-value: 9.9E-13 score: 58.3
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	PFAM	PF10197	Cir_N	coord: 11..46 e-value: 2.9E-14 score: 52.9
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 511..648 e-value: 4.6E-11 score: 22.2
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 546..647 e-value: 5.3E-34 score: 117.2
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 461..678 score: 14.454792
IPR022209	Pre-mRNA splicing factor	PFAM	PF12542	CWC25	coord: 64..155 e-value: 2.2E-10 score: 41.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 500..673 e-value: 1.1E-54 score: 186.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 505..655
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 546..641 e-value: 4.7E-12 score: 44.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g03440.1	Cp4.1LG01g03440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding