Cp4.1LG01g03140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g03140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	polyadenylate-binding protein 2-like
Location	Cp4.1LG01: 2095733 .. 2102662 (+)
RNA-Seq Expression	Cp4.1LG01g03140
Synteny	Cp4.1LG01g03140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGAGCCGGTTTTAACCCGAAGTTACTGCAACTCACTTAGCGTGAAAGAGGAGAGGGAGGGATAAACTCAGAAAGACGAAGGGGCGGAGGGACGGAGGAGAATCCATGGAGCACGAGGACTTCGACATGATTGGCTCGGACCTCAACGATACGGTGGTTCGTTTTTCCTTTTCAATCCTTTTTCTCTTTTATTTCGATTCTTATTCATCAATTCTTGACTACTTTCACCCTACTATAAACCCTAATTCCTTTCTTTTCTCTTGCTTTGTGCCTTGTAATCGGCTTTCAGGAGTTGGACGACATGACGAAACGGTTGAAAGAGATGGAAAGTGAAGCTGCTGCCCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAGATGAGTTCTCTACAAGGTTGGTTTCTGCTCTTCTTCGCTTTTGTGAGGTTCTTTTTGTGTTTTTGTGAAGCCTGTCCGGTGTGTGCTTATTTAAGATTGTCTTTCTTTTATCCTTTTTAGTGAATACTGAATTAGTAAGTCGAGTTTTGTGCTGGAATTGGTATTTCTTTGATCCTGAAGGTCGTCTTTTGATCGGATGCGAACTGAAAATGTTTAGGAAATGCCTAATCTCGGAAGAACTAGGTGCATTTGGATTTTGTATTGGAGCGATGCAGTAACTGAGCAACCGGATTTTGGACTATCCACTATTTAGAGATGATTAGTTTTCATCTTGGTCACAGTGGTAGTTTCTAATTAAGAGAAGTTGGCTAGTGTACTGATTTTTGTTCTTTGAGAAAAATACCAACTTTGGAATTGAGATCAGAATCTTAGTCATGTCAATAATGGAGATTTTATTCTGTGTTGATTATCCAGTACATGTTTTTTTACCTAAATACATACGCTTACTTGAAAAGTTCAAATTTGTCTGTTATCGTCAAATATTTCACCACTTTTTGTTTCACTAGATCCAGCAAGTTCTGCTGCAAGTCAAGCAAACAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTACGTTCTCTTTATCCCTGACTAACATTATTATTTTTTTCATATTAATGCTGTTGTGTCGCTTGCTTTGTCACTCATACTACATAATTAGTTGAATTTTGATTTATGGGTGAAGGGATTCTTTTTGTCCATGTTAAATTCTTGAACAATATCAGCTTTGTTTCTGTTAGAGACTTAGCTCACCTAAAGAGGAAGGCTATACATTTCCATTTAATGACAAACTAACTGATTCTTATGTCTTCACAATGTATGACATTGGGGGGCCTCTTTTGGTTTTTTGTATGGGGTGTAGCTAGTTCGTATAGAGGGCTGGATTCCAGTTATTCTTTCTTTCATGAAGTCAAGTCATGTGCGGTTAATTTCAATTTGTGATTGGAATGCAGCCATCAATTTATAAACTCTAGTAGCTTATGGAGGGAAACACATGAATGCCATTAATTTAACCCTTCCCTCCATTTTCTTAGTTGTTTCATTGTTTGAAATACTTTAACATTATTTTTTACACTACCTCATATTGTTACACAATTTGTTAGTTCTAACATTTTAAGTCGTTATGATGGGGAAGCTTAGACTTGTTCTTCTTTTAGAGAAGGTACCTACAGAAAACTATGTTCTTTGTTTAACAATTAAAAGAGTTTTTTGAGCTTGGTTTTCTTTGAGTCCGTTTATTTAATTCTTGCACTTCAACTAACTGACCTTCATTCCTTGGGGGTCTGTTCATTCCCAGTAGGGTCATTAAGGTTTATTGAATTTCAGTTAGCCATGAGTTTTTGTTTATTTTGGTACATATCATTCATGTCTCTGGAAGAGGTAGGATGATGCCTTCCATTTTGAGGATGTTGATCCGTTGGTTGCAAGCAGTACTATTTTAGTGATGTTAGGAGGGATCATTGTATTATTATCTATCGCTCTTCCTTTTAAGAGCTTTGAGACCCATAACTACTTATGTTCCATGGGACATTTTCTTTAGAGATTATTGCTATAAACTCAATTCAGAGAGTTTCTATTTAAGTTCTATAGACGACCCATTCCTGCACTGTGCTTGAAATTTTTAGCATGCTGGTGTTTCTAGCCTCATTTGACTCCTGTGTTTGACTGCAATTACAGGCTAGGCTTACTTCATCAGGTTTTCTGATTACCAATTGCTGAAGTTGGAAATTCTCTGATATGTTATAAAATACCTATCTATATTTTAAAAAAAGTGTCTTGTCCTAAAAAAAAGAGTAGATAAAAAAAAAAAGTGATAAATTCCAGGTGTAAAATTTTCAAGAGGGTAGAAGTTCGGTTGAATCCTTTGAAAAGAGAGTGTGGGAAAATGTTGAGATGAGTTAACCAGAAGAAAAGATATACCTAAATGTCTTGTAGTTCGTCGCGCCTTGTTGGCTGATTGGGTGGGCTGGGATTCTGTCAATATAACATGTCTCAAGTTCGAGGCCATGTGGGTAATGTGGAAAGGGGATTGGTAAAAAAAGAAGAGAGCAAACTCACTAGAATAAGGGTATGCTCGACTATGGATAAAGTCAGCAGAAGTTTTACTGGTTTGCTTGATTGAACTGGAATGAGGAGAGGACTCGACAAGTGTTGAAGGGAAGTTATGTGCATTCATAACTAAGGAGGACTAGCTATGGCGCTAAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATTGGTGACTACTGTTCCAGTTTTGTTTAAGTGATTTACAATCTATGGTGAGGGCCTCCAAATATCTCTCATTATGCTGTCTCCCCCCCTTAATCCATCAAGGAAAGGAAAAATGCAAAAGTAGGGAAGCTTTTATGTTTCTATGTCTACTTTTGGGAATTACTCACTTTTTCCTTGTAATTAGCCCACGCAGTCAATTTTAACTTTAAAGCTTTCGAATAGGTTATGAAATTAATACCTTAGTATGAAATCAGAAAAATGGTAAGTAATTAACCAATACATTGTCATTGTCGTGTGATGAACACACATTCTATTATAATCACGTGTCAAAAAAATTATTAGTCATCCAGGATTTACAAGAACGAATATGAAGGAATTAGAGTTACATGGTGGTTGCTTGTCCTCTTGTGAATGGGCGAATTGGAATTATTAGGGGACCTATTGTTATGAATGATTGGAACCCAACTTGGTTCTTTACAGGGTTGACGTGTATGATATGTACTGACTATCATTCATTTCAGTGAATATTTGATATTTTTATGTGAAGAAGATAGCTGAGAGATTGTGTAGAACTTGTGACAACAGACTTGCTGCTTATATTTCAATTAATAACTTGATTTCCTGAAGAAAATTTCTCCATACAGTAATTATGAATATGTGTGCTGTATTTTATTGATTAAAAAATATTAGTGAGATTTACTTTATATTAATATTTATATAAAATAAGTAAACTAATAGAAATTGACTATGCAAGCCCTTTTTTGTTGCTTTTTTCGTGATATGATAAATGTTTTGAGCTTCAATTGGAACAGGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGACATGTGGAACTGTAAACAGAATTACTATTCGCACAGATAAGTTTGGGCAGCCGAAGGGTTACGCGTATGTTGAATTCCTTGAGCCCGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTTAACTTAATAAATTACTTGATAGTGTTAGTTTAAGATTCTCCTACTGATTTTTTAGGCACATTGTTGGACAAAACTGAATTTATATGTTGTAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGACCCAACTCATTTATGGGTGCTCAATCCAGGAGCCCATATGTTGCTGCTCCTTATTTCTTCGCACCATACGGATATGGGTATGATTATTCAATACAAATTTCCCAAGCTCACCGTGTGAATCTTTAACTCTCTTCCTTGTCATTTAGCATAGTTCTCTACCTGTTGCAGGAAAGTTCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGCTAATTTTGTTTAAGACATTGTTGAATTAGAGATATCACACTTAAATGTCTGCATGCCCTTTTCTTTATTTATTATGATGGAAATTGATGTTTGGATAAAATCGAAATGGAGTGTGAGCTAGCACGATGCAGGTTCAATCACTAGAACAAAGCTCTACCATGCGCAGCCATTACTATGTAAAGAAAAAGGCTTCTCTGGACTTGCTGCAGGTAAGCTTTTAAGATTTAAATATTCACCTTGGAATTGTGCATCGAGTTTGAAGATAACGATGCAACACAATGCATACTAAACAGTTTATATATTTGGTGCTTGCTACTATTTTTATTTAATTCTGTGTCGAGATTTATTGACTTTTGTTTGCCCTATCTGCTCCGTCAGTTATGAAGTTCGTTCTTGTTTGAAGAACAATAATCGAGGGATCGAACCGGTGAGTAATCCACCCAAGTGTCATTTTTCGATTGGTTGTTTTCTCTGAATTAGTTTACTTAAAGTTTTTATTTGGCTCCCTTATGATCCTATTTCATTTCCTTCCGGCTTATGTAATGTAATAGTAATTTTTTTATTAAATTATTTATTTTATAAAAAGAAGAAAAAAGAAAAAAAATAAATAAAGCTTGAAGGGTCCCCTTTTCCCATCCCTGGGCTTTCCCTGGCCTTCATTTAATTTTTGGTTAATCGTAAAAAGCCATTCTTGTGTATTTTAGGGGATATCTTAAGATAAACATAATATTCCTAAAATATTATATTTCTACTATAAAGGTTATCTAAATTTTTAATCACTATAGTAATTTATGTTATATATAATAACAAATATATTTATAATAATTTATGTAATCTCAATATGTATAGATAATTGTATATTTGAATTAATGTTACCTGGTTGTTCTTGTTTTTGATAAATAGTTGCTTGTTTACTTACAATTTCTATGTTTTTTTTTATTTTTTTTGTGTATAAATTAATTAAACATTCGTCAAATTCTAAAAATAAATGTAAATTTATAGAAACAATTTTTTTTTATTTTTAGTTTTTAAAACATTGTTTGGATTTTGGTTAATTTATATGGCAGAGTTTTATTTAATTAAGAAACGTAATTAAAAGGTCTTTTAAATTAGAGACATAATTTAAACACAATTATTCCATAACCTGTTTTATCACATATTTAATGTTAGCCTTAAAATTAGATATATATATTCCCTTCTTTTTTCTCCTCTATTCCCATCATTACTTTATTCCCATTACCAAACACCCCCAAATCCTCCACATTTGGGAAAATAACAAATGCAAAAATGTAACCTAATGATTATAGCTTTTTTCCCTTTATTTAATTTTTTTCTCCTTTTCATTTAAATAAAGTCTACATTATTTATTTATTTATTTCCTTCCTCCTCCCATTTTTATCCCCTCCGTTTTCCAAACAGAAAATTACACGTCAGCACCCGAAACGACAGCGTTTTATCCGTCTCCCCAACCATACGGCAAGCAAACCCATTTTCCTGGATTACATTTTTGTACTCTCTGGCCACGTATCCTCCATCAGCCACGTCACACCAGAGTCTTGCACGTAGACGTCTGAGGGTCCCACATCGCCGGAAGAAGAAACTTCCGTCCATTAGCACCGTAGGCATTGAAACTAGCTCCTGTGACCTTGTCGACCAGAACCTGACCCGGATAACCCGGGTACGCTCCGGACCCGAACAGCCCAGTGCAGGCTGATACTGCCTCCAGCGGCGCCGTCGGCGGGCCCTGGAAGTAACCGTCGTTGAAAGGATTTGTCACAGTACCGGCTAGGACGGTGGCCAAATTGATGATTATCCCGTCGATACCAACGTCACCGTTTGGGGCGATCAACGGCGGCGTCTGAGGGCCATAAATGGGCTGATGAAACGGCCAAGCACAGTACCCAGGGCACTGAGTTTCTGAGTTTCCGACCCACACATAAGCGGTTCGAGCCCTGCTCCGACCCACATGAACCCATCCATGCGTGCCACACCGACTCCGGCAGAACCCATCAACGGCAACATCCTTGGCCGTTAGCACCACGTTCACCGAATTCAACTGATTCACCTTCCCCACCAATGCCCGAAGATGCAGGTCCTTCAAATACTTCCCCAAAGTGTAATCCTCATCAAGAATCTGCTTCCCGACGACGAGATTCGACGACCCACCCTTGTATTTCTCCGTCGTCTTCCACCAGAGATCCGCCGATGGCGCCGGCGCTTGAGAATAGCGCAAAGATTGAATGAAATCGACAATTACAGAGCGCTGCGAGGGTGTAAATTGGCCGTACCAGATCAAATTGACGGTGATATCCCCTTTCAAAAGAGCCCCCTTGTGGTATTCAAGTACCAGCGGCTGTTCCTCTACCAGCGCCGCGAGTTTCCGACCAAGACCACGGTCGGCGGCGACAGAGAGGGAAAACAGAGTGAAACAGAGAAGGGCAAGATGGAAAATAGAAGCCATGAGTGAGGGTAAAGTTGGAACAAGGAAATAGACTTTTGGAATTTGGAGCTTTGTGAGTGTTTGGTTTCGAGTTTAGGGGGGAATGTAATGGTGTGAGTTATTTATAGGACAAGAATTTTGGATATGAACAAAGGAGACAGCTGTCTGAGTACGACACGTGGAGGTGTTGAATTGGTCTGTGAGGTTAGTCCAAAACTTGATTACAGGCTGTGACGGGAGATTTTCCGGTGCGTGAGCCTCACGTGCCTTCCAAATCCCGTTACCGAATCTGACGTGGCGTCGGACGTGGTGGTGATACGACCCCTCCACTTCCCTCTTGTGCCTCAGCAATTCGCCCACGTGCCTTCTTCACTTATTCTTTATTTGCCTTACAATTCTTTTTTTTGTTTTTTGTTTTTTTTTTCTATATTTCTTGGC

mRNA sequence

TAGGAGCCGGTTTTAACCCGAAGTTACTGCAACTCACTTAGCGTGAAAGAGGAGAGGGAGGGATAAACTCAGAAAGACGAAGGGGCGGAGGGACGGAGGAGAATCCATGGAGCACGAGGACTTCGACATGATTGGCTCGGACCTCAACGATACGGTGGAGTTGGACGACATGACGAAACGGTTGAAAGAGATGGAAAGTGAAGCTGCTGCCCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAGATGAGTTCTCTACAAGTGAATACTGAATTAGTAAGTCGAGTTTTGTGCTGGAATTGGTATTTCTTTGATCCTGAAGGTCGTCTTTTGATCGGATGCGAACTGAAAATGTTTAGGAAATGCCTAATCTCGGAAGAACTAGATCCAGCAAGTTCTGCTGCAAGTCAAGCAAACAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGACATGTGGAACTGTAAACAGAATTACTATTCGCACAGATAAGTTTGGGCAGCCGAAGGGTTACGCGTATGTTGAATTCCTTGAGCCCGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGACCCAACTCATTTATGGGTGCTCAATCCAGGAGCCCATATGTTGCTGCTCCTTATTTCTTCGCACCATACGGATATGGGAAAGTTCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGCTAATTTTGTTTAAGACATTGTTGAATTAGAGATATCACACTTAAATGTCTGCATGCCCTTTTCTTTATTTATTATGATGGAAATTGATGTTTGGATAAAATCGAAATGGAGTGTGAGCTAGCACGATGCAGGTTCAATCACTAGAACAAAGCTCTACCATGCGCAGCCATTACTATGTAAAGAAAAAGGCTTCTCTGGACTTGCTGCAGTTATGAAGTTCGTTCTTGTTTGAAGAACAATAATCGAGGGATCGAACCGAAAATTACACGTCAGCACCCGAAACGACAGCGTTTTATCCGTCTCCCCAACCATACGGCAAGCAAACCCATTTTCCTGGATTACATTTTTGTACTCTCTGGCCACGTATCCTCCATCAGCCACGTCACACCAGAGTCTTGCACGTAGACGTCTGAGGGTCCCACATCGCCGGAAGAAGAAACTTCCGTCCATTAGCACCGTAGGCATTGAAACTAGCTCCTGTGACCTTGTCGACCAGAACCTGACCCGGATAACCCGGGTACGCTCCGGACCCGAACAGCCCAGTGCAGGCTGATACTGCCTCCAGCGGCGCCGTCGGCGGGCCCTGGAAGTAACCGTCGTTGAAAGGATTTGTCACAGTACCGGCTAGGACGGTGGCCAAATTGATGATTATCCCGTCGATACCAACGTCACCGTTTGGGGCGATCAACGGCGGCGTCTGAGGGCCATAAATGGGCTGATGAAACGGCCAAGCACAGTACCCAGGGCACTGAGTTTCTGAGTTTCCGACCCACACATAAGCGGTTCGAGCCCTGCTCCGACCCACATGAACCCATCCATGCGTGCCACACCGACTCCGGCAGAACCCATCAACGGCAACATCCTTGGCCGTTAGCACCACGTTCACCGAATTCAACTGATTCACCTTCCCCACCAATGCCCGAAGATGCAGGTCCTTCAAATACTTCCCCAAAGTGTAATCCTCATCAAGAATCTGCTTCCCGACGACGAGATTCGACGACCCACCCTTGTATTTCTCCGTCGTCTTCCACCAGAGATCCGCCGATGGCGCCGGCGCTTGAGAATAGCGCAAAGATTGAATGAAATCGACAATTACAGAGCGCTGCGAGGGTGTAAATTGGCCGTACCAGATCAAATTGACGGTGATATCCCCTTTCAAAAGAGCCCCCTTGTGGTATTCAAGTACCAGCGGCTGTTCCTCTACCAGCGCCGCGAGTTTCCGACCAAGACCACGGTCGGCGGCGACAGAGAGGGAAAACAGAGTGAAACAGAGAAGGGCAAGATGGAAAATAGAAGCCATGAGTGAGGGTAAAGTTGGAACAAGGAAATAGACTTTTGGAATTTGGAGCTTTGTGAGTGTTTGGTTTCGAGTTTAGGGGGGAATGTAATGGTGTGAGTTATTTATAGGACAAGAATTTTGGATATGAACAAAGGAGACAGCTGTCTGAGTACGACACGTGGAGGTGTTGAATTGGTCTGTGAGGTTAGTCCAAAACTTGATTACAGGCTGTGACGGGAGATTTTCCGGTGCGTGAGCCTCACGTGCCTTCCAAATCCCGTTACCGAATCTGACGTGGCGTCGGACGTGGTGGTGATACGACCCCTCCACTTCCCTCTTGTGCCTCAGCAATTCGCCCACGTGCCTTCTTCACTTATTCTTTATTTGCCTTACAATTCTTTTTTTTGTTTTTTGTTTTTTTTTTCTATATTTCTTGGC

Coding sequence (CDS)

ATGGAGCACGAGGACTTCGACATGATTGGCTCGGACCTCAACGATACGGTGGAGTTGGACGACATGACGAAACGGTTGAAAGAGATGGAAAGTGAAGCTGCTGCCCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAGATGAGTTCTCTACAAGTGAATACTGAATTAGTAAGTCGAGTTTTGTGCTGGAATTGGTATTTCTTTGATCCTGAAGGTCGTCTTTTGATCGGATGCGAACTGAAAATGTTTAGGAAATGCCTAATCTCGGAAGAACTAGATCCAGCAAGTTCTGCTGCAAGTCAAGCAAACAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAGACATGTGGAACTGTAAACAGAATTACTATTCGCACAGATAAGTTTGGGCAGCCGAAGGGTTACGCGTATGTTGAATTCCTTGAGCCCGAAGCTGTTCAAGAGGCTCTTCTTCTGAATGAATCAGAACTACATGGTCGACAGCTGAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGACCCAACTCATTTATGGGTGCTCAATCCAGGAGCCCATATGTTGCTGCTCCTTATTTCTTCGCACCATACGGATATGGGAAAGTTCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

Protein sequence

MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY

Homology

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BLAST of Cp4.1LG01g03140 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.7e-68
Identity = 141/234 (60.26%), Postives = 162/234 (69.23%), Query Frame = 0


Query: 5   DFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWN 64
           D DM  +D +   ELD+M KRLKEME EAAALREMQAKVEKEM +               
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA--------------- 88

Query: 65  WYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPE 124
                                       DPAS AA+QA +EEVDARSVFVGNVDY+CTPE
Sbjct: 89  ---------------------------QDPASIAANQAGKEEVDARSVFVGNVDYACTPE 148

Query: 125 EVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAK 184
           EVQQHFQTCGTV+R+TI TDKFGQPKG+AYVEF+E EAVQEAL LNESELHGRQLKV  K
Sbjct: 149 EVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQK 208

Query: 185 RTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
           RTN+PG+KQ+R RR N +MG + R P++ +PY ++PYGYGK PRFR P RY PY
Sbjct: 209 RTNVPGLKQFRGRRFNPYMGYRFRRPFM-SPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.5e-67
Identity = 140/234 (59.83%), Postives = 158/234 (67.52%), Query Frame = 0


Query: 5   DFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWN 64
           D DM  +D +   EL +M +RLKEME EAAALREMQAKVEKEM + Q             
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQ------------- 84

Query: 65  WYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPE 124
                                       DPAS AA+Q  +EEVDARSV+VGNVDY+CTPE
Sbjct: 85  ----------------------------DPASMAANQEGKEEVDARSVYVGNVDYACTPE 144

Query: 125 EVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAK 184
           EVQ HFQTCGTVNR+TI  DKFGQPKG+AYVEF+E EAVQEAL LNESELHGRQLKV+ K
Sbjct: 145 EVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPK 204

Query: 185 RTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
           RTN+PGMKQY P R N  MG + R P+V  PYF++PYGYGK PRFR P RY PY
Sbjct: 205 RTNVPGMKQYHPGRFNPSMGYRFRRPFV-PPYFYSPYGYGKAPRFRRPMRYMPY 216

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BLAST of Cp4.1LG01g03140 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.6e-55
Identity = 121/222 (54.50%), Postives = 146/222 (65.77%), Query Frame = 0


Query: 18  ELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWNWYFFDPEGRLLIG 77
           +L+DM KR+KE+E EA ALREMQAK EK+M + Q                 DP G     
Sbjct: 53  DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQ-----------------DPSG----- 112

Query: 78  CELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVN 137
                                 S A +EEVD+RS++VGNVDY+CTPEEVQQHFQ+CGTVN
Sbjct: 113 --------------------GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN 172

Query: 138 RITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPR 197
           R+TI TDKFGQPKG+AYVEF+E EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R R
Sbjct: 173 RVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGR 227

Query: 198 -RPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
            RP  F   +   P V    F+ PY YG+VPRFR P RY PY
Sbjct: 233 GRP--FRPMRGFMPGVP---FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 85/205 (41.46%), Postives = 108/205 (52.68%), Query Frame = 0


Query: 18  ELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWNWYFFDPEGRLLIG 77
           EL +M +R+ EME+EAA LR MQ +++ E  +L                           
Sbjct: 13  ELLEMKERVAEMEAEAAKLRAMQEQLDNETEAL--------------------------- 72

Query: 78  CELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVN 137
                                  + ++E +DA+SV+VGNVDYS TPEE+Q HF +CG+VN
Sbjct: 73  -----------------------RNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVN 132

Query: 138 RITIRTDKF-GQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRP 197
           R+TI  DKF G PKG+AY+EF EP  V  ALLLN S LH R LKVT KRTN+PGM + R 
Sbjct: 133 RVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRG 166

Query: 198 RRPNSFMGAQSRSPYVAAPYFFAPY 222
           R      G + R  Y      FAPY
Sbjct: 193 RGRGRGRG-RGRGGYRGRARGFAPY 166

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BLAST of Cp4.1LG01g03140 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-26
Identity = 83/231 (35.93%), Postives = 120/231 (51.95%), Query Frame = 0


Query: 2   EHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVL 61
           E E  ++ G    +  EL+ +  R++EME EA  L+E+Q +VEK+M+             
Sbjct: 93  EEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGN------ 152

Query: 62  CWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSC 121
                     G +++  E KM                       E DARS++VGNVDY  
Sbjct: 153 ---------AGPVIMSVEEKM-----------------------EADARSIYVGNVDYGA 212

Query: 122 TPEEVQQHFQTCGTVNRITIRTDKF-GQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 181
           T EE++ HF  CG+VNR+TI  DKF G PKG+AY+EF + E+V+ +L L+ES   GRQ+K
Sbjct: 213 TAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIK 272

Query: 182 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRM 232
           V  KRTN PG+       P +   A++ S Y +   F++  GY   PR R+
Sbjct: 273 VVPKRTNRPGISTTDRGFPRARYRARA-SSYSSRSRFYS--GYTPRPRGRV 282

[Close]

BLAST of Cp4.1LG01g03140 vs. NCBI nr
Match: XP_023541205.1 (polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371 bits (953), Expect = 1.56e-128
Identity = 198/239 (82.85%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ         
Sbjct: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPASSAASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASSAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 198

[Close]

BLAST of Cp4.1LG01g03140 vs. NCBI nr
Match: XP_022988970.1 (polyadenylate-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 370 bits (950), Expect = 4.48e-128
Identity = 197/239 (82.43%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHEDFDMIGSDLNDTVELDDMTKRLKEME+EAAALREMQAKVEKEMSSLQ         
Sbjct: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMENEAAALREMQAKVEKEMSSLQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPASSAASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASSAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 198

[Close]

BLAST of Cp4.1LG01g03140 vs. NCBI nr
Match: XP_022943012.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >KAG6600247.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030904.1 Polyadenylate-binding protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (949), Expect = 6.36e-128
Identity = 197/239 (82.43%), Postives = 197/239 (82.43%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHEDFDMIGSDLNDT ELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ         
Sbjct: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPASSAASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASSAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 198

[Close]

BLAST of Cp4.1LG01g03140 vs. NCBI nr
Match: XP_022140995.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 342 bits (876), Expect = 8.11e-117
Identity = 184/239 (76.99%), Postives = 190/239 (79.50%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHED DMIGS+ ND VELDDM KRLKEME EAAALREMQAKVEKEMSS+Q         
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPAS+AASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASAAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRR N FMGA+SRSPYVA PYFF+PYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA-PYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Cp4.1LG01g03140 vs. NCBI nr
Match: XP_008462875.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA0061167.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa] >TYK29930.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 339 bits (869), Expect = 9.44e-116
Identity = 181/239 (75.73%), Postives = 190/239 (79.50%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEH+D DMIGSD ND VELDDM KRLK+ME EAAALREMQAKVEKEMSS+Q         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPAS+AASQANREEVD+RSVFVGNVDYS
Sbjct: 61  --------------------------------DPASAAASQANREEVDSRSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRR N FMGA+SRSPYVA PYFF+PYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA-PYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy TrEMBL
Match: A0A6J1JL28 (polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486168 PE=4 SV=1)

HSP 1 Score: 370 bits (950), Expect = 2.17e-128
Identity = 197/239 (82.43%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHEDFDMIGSDLNDTVELDDMTKRLKEME+EAAALREMQAKVEKEMSSLQ         
Sbjct: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMENEAAALREMQAKVEKEMSSLQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPASSAASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASSAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 198

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy TrEMBL
Match: A0A6J1FRU1 (polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111447876 PE=4 SV=1)

HSP 1 Score: 370 bits (949), Expect = 3.08e-128
Identity = 197/239 (82.43%), Postives = 197/239 (82.43%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHEDFDMIGSDLNDT ELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ         
Sbjct: 1   MEHEDFDMIGSDLNDTAELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPASSAASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASSAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 198

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy TrEMBL
Match: A0A6J1CGQ3 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011513 PE=4 SV=1)

HSP 1 Score: 342 bits (876), Expect = 3.93e-117
Identity = 184/239 (76.99%), Postives = 190/239 (79.50%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEHED DMIGS+ ND VELDDM KRLKEME EAAALREMQAKVEKEMSS+Q         
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPAS+AASQANREEVDARSVFVGNVDYS
Sbjct: 61  --------------------------------DPASAAASQANREEVDARSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRR N FMGA+SRSPYVA PYFF+PYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA-PYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy TrEMBL
Match: A0A5A7V2R3 (Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00160 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 4.57e-116
Identity = 181/239 (75.73%), Postives = 190/239 (79.50%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEH+D DMIGSD ND VELDDM KRLK+ME EAAALREMQAKVEKEMSS+Q         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPAS+AASQANREEVD+RSVFVGNVDYS
Sbjct: 61  --------------------------------DPASAAASQANREEVDSRSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRR N FMGA+SRSPYVA PYFF+PYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA-PYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Cp4.1LG01g03140 vs. ExPASy TrEMBL
Match: A0A1S3CHX7 (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 4.57e-116
Identity = 181/239 (75.73%), Postives = 190/239 (79.50%), Query Frame = 0


Query: 1   MEHEDFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRV 60
           MEH+D DMIGSD ND VELDDM KRLK+ME EAAALREMQAKVEKEMSS+Q         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQ--------- 60

Query: 61  LCWNWYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYS 120
                                           DPAS+AASQANREEVD+RSVFVGNVDYS
Sbjct: 61  --------------------------------DPASAAASQANREEVDSRSVFVGNVDYS 120

Query: 121 CTPEEVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLK 180
           CTPEEVQQHFQ+CGTVNRITIRTDKFGQPKGYAYVEF+EPEAVQEALLLNESELHGRQLK
Sbjct: 121 CTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLK 180

Query: 181 VTAKRTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPYY 239
           VTAKRTNIPGMKQYRPRR N FMGA+SRSPYVA PYFF+PYGYGKVPRFRMPTRYGPYY
Sbjct: 181 VTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA-PYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Cp4.1LG01g03140 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.5 bits (659), Expect = 5.5e-69
Identity = 141/234 (60.26%), Postives = 162/234 (69.23%), Query Frame = 0


Query: 5   DFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWN 64
           D DM  +D +   ELD+M KRLKEME EAAALREMQAKVEKEM +               
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA--------------- 88

Query: 65  WYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPE 124
                                       DPAS AA+QA +EEVDARSVFVGNVDY+CTPE
Sbjct: 89  ---------------------------QDPASIAANQAGKEEVDARSVFVGNVDYACTPE 148

Query: 125 EVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAK 184
           EVQQHFQTCGTV+R+TI TDKFGQPKG+AYVEF+E EAVQEAL LNESELHGRQLKV  K
Sbjct: 149 EVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQK 208

Query: 185 RTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
           RTN+PG+KQ+R RR N +MG + R P++ +PY ++PYGYGK PRFR P RY PY
Sbjct: 209 RTNVPGLKQFRGRRFNPYMGYRFRRPFM-SPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Cp4.1LG01g03140 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 255.0 bits (650), Expect = 6.0e-68
Identity = 140/234 (59.83%), Postives = 158/234 (67.52%), Query Frame = 0


Query: 5   DFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWN 64
           D DM  +D +   EL +M +RLKEME EAAALREMQAKVEKEM + Q             
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQ------------- 84

Query: 65  WYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPE 124
                                       DPAS AA+Q  +EEVDARSV+VGNVDY+CTPE
Sbjct: 85  ----------------------------DPASMAANQEGKEEVDARSVYVGNVDYACTPE 144

Query: 125 EVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAK 184
           EVQ HFQTCGTVNR+TI  DKFGQPKG+AYVEF+E EAVQEAL LNESELHGRQLKV+ K
Sbjct: 145 EVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPK 204

Query: 185 RTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
           RTN+PGMKQY P R N  MG + R P+V  PYF++PYGYGK PRFR P RY PY
Sbjct: 205 RTNVPGMKQYHPGRFNPSMGYRFRRPFV-PPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of Cp4.1LG01g03140 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-61
Identity = 130/220 (59.09%), Postives = 148/220 (67.27%), Query Frame = 0


Query: 5   DFDMIGSDLNDTVELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWN 64
           D DM  +D +   EL +M +RLKEME EAAALREMQAKVEKEM + Q             
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQ------------- 84

Query: 65  WYFFDPEGRLLIGCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPE 124
                                       DPAS AA+Q  +EEVDARSV+VGNVDY+CTPE
Sbjct: 85  ----------------------------DPASMAANQEGKEEVDARSVYVGNVDYACTPE 144

Query: 125 EVQQHFQTCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAK 184
           EVQ HFQTCGTVNR+TI  DKFGQPKG+AYVEF+E EAVQEAL LNESELHGRQLKV+ K
Sbjct: 145 EVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPK 202

Query: 185 RTNIPGMKQYRPRRPNSFMGAQSRSPYVAAPYFFAPYGYG 225
           RTN+PGMKQY P R N  MG + R P+V  PYF++PYGYG
Sbjct: 205 RTNVPGMKQYHPGRFNPSMGYRFRRPFV-PPYFYSPYGYG 202

[Close]

BLAST of Cp4.1LG01g03140 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 228.4 bits (581), Expect = 6.0e-60
Identity = 125/223 (56.05%), Postives = 158/223 (70.85%), Query Frame = 0


Query: 18  ELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQ-VNTELVSRVLCWNWYFFDPEGRLLI 77
           +L+DM KR+KE+E EA ALREMQAK EK+M + Q +   L+  +L W +        + +
Sbjct: 53  DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNL 112

Query: 78  GCELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTV 137
              L  F       E +  +S  S A +EEVD+RS++VGNVDY+CTPEEVQQHFQ+CGTV
Sbjct: 113 SRNLLEF-----EYEKEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTV 172

Query: 138 NRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRP 197
           NR+TI TDKFGQPKG+AYVEF+E EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R 
Sbjct: 173 NRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRG 232

Query: 198 R-RPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
           R RP  F   +   P V    F+ PY YG+VPRFR P RY PY
Sbjct: 233 RGRP--FRPMRGFMPGVP---FYPPYAYGRVPRFRRPMRYRPY 265

[Close]

BLAST of Cp4.1LG01g03140 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-56
Identity = 121/222 (54.50%), Postives = 146/222 (65.77%), Query Frame = 0


Query: 18  ELDDMTKRLKEMESEAAALREMQAKVEKEMSSLQVNTELVSRVLCWNWYFFDPEGRLLIG 77
           +L+DM KR+KE+E EA ALREMQAK EK+M + Q                 DP G     
Sbjct: 53  DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQ-----------------DPSG----- 112

Query: 78  CELKMFRKCLISEELDPASSAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQTCGTVN 137
                                 S A +EEVD+RS++VGNVDY+CTPEEVQQHFQ+CGTVN
Sbjct: 113 --------------------GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN 172

Query: 138 RITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPR 197
           R+TI TDKFGQPKG+AYVEF+E EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R R
Sbjct: 173 RVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGR 227

Query: 198 -RPNSFMGAQSRSPYVAAPYFFAPYGYGKVPRFRMPTRYGPY 239
            RP  F   +   P V    F+ PY YG+VPRFR P RY PY
Sbjct: 233 GRP--FRPMRGFMPGVP---FYPPYAYGRVPRFRRPMRYRPY 227

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	7.7e-68	60.26	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	8.5e-67	59.83	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	2.6e-55	54.50	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	1.4e-29	41.46	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	3.3e-26	35.93	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of Cp4.1LG01g03140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541205.1	1.56e-128	82.85	polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988970.1	4.48e-128	82.43	polyadenylate-binding protein 2-like [Cucurbita maxima]	[more]
XP_022943012.1	6.36e-128	82.43	polyadenylate-binding protein 2-like [Cucurbita moschata] >KAG6600247.1 Polyaden...	[more]
XP_022140995.1	8.11e-117	76.99	polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]	[more]
XP_008462875.1	9.44e-116	75.73	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA00...	[more]

BLAST of Cp4.1LG01g03140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JL28	2.17e-128	82.43	polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486168...	[more]
A0A6J1FRU1	3.08e-128	82.43	polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A6J1CGQ3	3.93e-117	76.99	polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7V2R3	4.57e-116	75.73	Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CHX7	4.57e-116	75.73	polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG01g03140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	5.5e-69	60.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	6.0e-68	59.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	1.4e-61	59.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	6.0e-60	56.05	polyadenylate-binding protein 1	[more]
AT5G51120.1	1.8e-56	54.50	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..53
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 87..235 coord: 4..52
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 87..235 coord: 4..52
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 111..182 e-value: 4.6331E-48 score: 151.29
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 111..182 e-value: 1.2E-22 score: 91.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 112..180 e-value: 4.5E-17 score: 61.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 110..186 score: 16.909462
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 104..190 e-value: 1.1E-26 score: 94.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 101..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g03140.1	Cp4.1LG01g03140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding