Cp4.1LG01g03000 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g03000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 2125065 .. 2125289 (+)
RNA-Seq ExpressionCp4.1LG01g03000
SyntenyCp4.1LG01g03000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

mRNA sequence

ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

Coding sequence (CDS)

ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

Protein sequence

MERKIKKRDTCKADRGSTYVDILEMETANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAPLEK
Homology
BLAST of Cp4.1LG01g03000 vs. NCBI nr
Match: KAG6600251.1 (hypothetical protein SDJN03_05484, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136 bits (343), Expect = 9.18e-40
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 1  MERKIKKRDTCKADRGSTYVDILEMETANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPP 60
          MERKIKKRDT + DRGSTYVDILEMETANKFP+L RRELRVGDLFDKTTSMRLSTSSTPP
Sbjct: 1  MERKIKKRDTWQRDRGSTYVDILEMETANKFPLLWRRELRVGDLFDKTTSMRLSTSSTPP 60

Query: 61 GFGEYEESSAPLEK 74
          GFGEYEESSAPLEK
Sbjct: 61 GFGEYEESSAPLEK 74

BLAST of Cp4.1LG01g03000 vs. NCBI nr
Match: TYK29421.1 (hypothetical protein E5676_scaffold655G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 7.64e-20
Identity = 46/73 (63.01%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 1  MERKIKKRDTCKADRGSTYVDILEMETANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPP 60
          ME K KK +T +   GS YVDILEM T +KF  LG RE RVGDLFDKTTS RL   ST  
Sbjct: 13 MENKTKKMETWRPFTGSAYVDILEMATGDKFSFLGHREQRVGDLFDKTTSKRLFVISTSS 72

Query: 61 GFGEYEESSAPLE 73
          GFG YEES +P E
Sbjct: 73 GFGAYEESFSPRE 85

BLAST of Cp4.1LG01g03000 vs. ExPASy TrEMBL
Match: A0A5D3E1F8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00120 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.70e-20
Identity = 46/73 (63.01%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 1  MERKIKKRDTCKADRGSTYVDILEMETANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPP 60
          ME K KK +T +   GS YVDILEM T +KF  LG RE RVGDLFDKTTS RL   ST  
Sbjct: 13 MENKTKKMETWRPFTGSAYVDILEMATGDKFSFLGHREQRVGDLFDKTTSKRLFVISTSS 72

Query: 61 GFGEYEESSAPLE 73
          GFG YEES +P E
Sbjct: 73 GFGAYEESFSPRE 85

BLAST of Cp4.1LG01g03000 vs. ExPASy TrEMBL
Match: A0A0A0KWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G181210 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.82e-11
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 25 METANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAP 71
          M TA+KF  LG RE RVGDLFDKTTS  L   STP GFG YEE+S P
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTP 47

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600251.19.18e-4093.24hypothetical protein SDJN03_05484, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK29421.17.64e-2063.01hypothetical protein E5676_scaffold655G00120 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3E1F83.70e-2063.01Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KWH44.82e-1168.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G181210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03000.1Cp4.1LG01g03000.1mRNA