Cp4.1LG01g02380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g02380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger protein 4-like
Location	Cp4.1LG01: 2421941 .. 2422495 (-)
RNA-Seq Expression	Cp4.1LG01g02380
Synteny	Cp4.1LG01g02380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATAAACAGTAACGGTAACGGACAAGCTGATTCGAGTGAAGAAGAACAAGAAGCAACAGACCAACCTGATGGCGTAGCAGCTTTGGAGTGGCTGGACTTGAGCTTGGGAAGGAAGAACAAGCAGCTTTTAGCTGAATCACAAAGCTCTGCAGCAGCTTCAACCAAGACTTTTTCATGCAACTTCTGTAAGAGGGTGTTCTTCAGTTCACAGGCATTGGGAGGCCATCAAAATGCCCACAAGAGAGAGAGGAGTGCAGCCAGAAGGCACCAAGCCCACAAGATGATGACCCTGTTTGGTCTGCCAATCCATAATTCTATGATTAGATCACTTGGTGTTCAGCCACATTCACTTGTGCACAAACCAGGCAGGGAAGATACTGTTCTAGCAGCAAGATTTAATCATGTCAAAACTGGTTCATGGGCACCTTTCATGTTGGGGGATGCCATGGACTTGATGTGGCCGGGGAGCTTCCGCTTCACTCAACATCGAATTCTCGACAAGCCATCACCAATTGAACCGTTCCATCTCGATCTGAATCTTCGACTTTAA

mRNA sequence

ATGTCGATAAACAGTAACGGTAACGGACAAGCTGATTCGAGTGAAGAAGAACAAGAAGCAACAGACCAACCTGATGGCGTAGCAGCTTTGGAGTGGCTGGACTTGAGCTTGGGAAGGAAGAACAAGCAGCTTTTAGCTGAATCACAAAGCTCTGCAGCAGCTTCAACCAAGACTTTTTCATGCAACTTCTGCAGGGAAGATACTGTTCTAGCAGCAAGATTTAATCATGTCAAAACTGGTTCATGGGCACCTTTCATGTTGGGGGATGCCATGGACTTGATGTGGCCGGGGAGCTTCCGCTTCACTCAACATCGAATTCTCGACAAGCCATCACCAATTGAACCGTTCCATCTCGATCTGAATCTTCGACTTTAA

Coding sequence (CDS)

ATGTCGATAAACAGTAACGGTAACGGACAAGCTGATTCGAGTGAAGAAGAACAAGAAGCAACAGACCAACCTGATGGCGTAGCAGCTTTGGAGTGGCTGGACTTGAGCTTGGGAAGGAAGAACAAGCAGCTTTTAGCTGAATCACAAAGCTCTGCAGCAGCTTCAACCAAGACTTTTTCATGCAACTTCTGCAGGGAAGATACTGTTCTAGCAGCAAGATTTAATCATGTCAAAACTGGTTCATGGGCACCTTTCATGTTGGGGGATGCCATGGACTTGATGTGGCCGGGGAGCTTCCGCTTCACTCAACATCGAATTCTCGACAAGCCATCACCAATTGAACCGTTCCATCTCGATCTGAATCTTCGACTTTAA

Protein sequence

MSINSNGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCREDTVLAARFNHVKTGSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLNLRL

Homology

[Close]

BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: XP_023531890.1 (zinc finger protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (570), Expect = 2.86e-72
Identity = 124/184 (67.39%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 1   MSINSNGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFS 60
           MSINSNGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFS
Sbjct: 10  MSINSNGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFS 69

Query: 61  CNFC-------------------------------------------------------- 120
           CNFC                                                        
Sbjct: 70  CNFCKRVFFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLV 129

Query: 121 ----REDTVLAARFNHVKTGSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDL 124
               REDTVLAARFNHVKTGSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDL
Sbjct: 130 HKPGREDTVLAARFNHVKTGSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDL 189

[Close]

BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: XP_022942380.1 (zinc finger protein 4-like [Cucurbita moschata])

HSP 1 Score: 201 bits (512), Expect = 1.80e-63
Identity = 112/179 (62.57%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 6   NGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC- 65
           N NGQADSSEEE+EATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC 
Sbjct: 13  NSNGQADSSEEEREATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCK 72

Query: 66  -----------------------------------------------------------R 124
                                                                      R
Sbjct: 73  RVFFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLVHKPGR 132

[Close]

BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: XP_022982886.1 (zinc finger protein 4-like [Cucurbita maxima])

HSP 1 Score: 194 bits (493), Expect = 1.40e-60
Identity = 110/177 (62.15%), Postives = 113/177 (63.84%), Query Frame = 0


Query: 8   NGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC--- 67
           NG+ADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC   
Sbjct: 15  NGRADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCKRV 74

Query: 68  ---------------------------------------------------------RED 124
                                                                    RED
Sbjct: 75  FFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLVHKPGRED 134

[Close]

BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: KAG6600301.1 (Zinc finger protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030960.1 Zinc finger protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191 bits (486), Expect = 1.47e-59
Identity = 109/177 (61.58%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 8   NGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC--- 67
           NGQADSSEEE+EATD   GVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC   
Sbjct: 15  NGQADSSEEEREATD---GVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCKRV 74

Query: 68  ---------------------------------------------------------RED 124
                                                                    RED
Sbjct: 75  FFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLVHKPGRED 134

[Close]

BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: KAG6589662.1 (Zinc finger protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (424), Expect = 3.34e-50
Identity = 97/163 (59.51%), Postives = 100/163 (61.35%), Query Frame = 0


Query: 8   NGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC--- 67
           NGQADSSEEE+EATD   GVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC   
Sbjct: 15  NGQADSSEEEREATD---GVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCKRV 74

Query: 68  ---------------------------------------------------------RED 110
                                                                    RED
Sbjct: 75  FFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLVHKPGRED 134

[Close]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL
Match: A0A6J1FW71 (zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111447441 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 8.71e-64
Identity = 112/179 (62.57%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 6   NGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC- 65
           N NGQADSSEEE+EATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC 
Sbjct: 13  NSNGQADSSEEEREATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCK 72

Query: 66  -----------------------------------------------------------R 124
                                                                      R
Sbjct: 73  RVFFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLVHKPGR 132

[Close]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL
Match: A0A6J1J0M8 (zinc finger protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481597 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 6.76e-61
Identity = 110/177 (62.15%), Postives = 113/177 (63.84%), Query Frame = 0


Query: 8   NGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC--- 67
           NG+ADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC   
Sbjct: 15  NGRADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCKRV 74

Query: 68  ---------------------------------------------------------RED 124
                                                                    RED
Sbjct: 75  FFSSQALGGHQNAHKRERSAARRHQAHKMMTLFGLPIHNSMIRSLGVQPHSLVHKPGRED 134

[Close]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL
Match: A0A6J1D6I0 (zinc finger protein 4-like OS=Momordica charantia OX=3673 GN=LOC111017766 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 3.40e-42
Identity = 93/180 (51.67%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 9   GQADSSEEEQEATDQPDG-VAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC--- 68
           GQ DS EEE  A DQPDG V  LEWL LSLG  NKQLL ESQ SAAAS KTFSCNFC   
Sbjct: 16  GQGDSIEEEV-ARDQPDGGVGTLEWLSLSLG-SNKQLLTESQRSAAASAKTFSCNFCKRV 75

Query: 69  ---------------------------------------------------------RED 124
                                                                    RED
Sbjct: 76  FYSSQALGGHQNAHKRERSAARRHQAQRMMTLLGLPIHNSMIRSLGVQPHSLVHKPGRED 135

[Close]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL
Match: A0A6J1E569 (zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430693 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 4.29e-42
Identity = 88/175 (50.29%), Postives = 97/175 (55.43%), Query Frame = 0


Query: 15  EEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC---------- 74
           EEE+EATDQP+GV ALEWL+LSLGR NKQLL ESQSSA  S KTFSCNFC          
Sbjct: 29  EEEEEATDQPEGVGALEWLNLSLGR-NKQLLTESQSSAG-SAKTFSCNFCKRVFYSSQAL 88

Query: 75  --------------------------------------------------REDTVLAARF 124
                                                             REDT + ARF
Sbjct: 89  GGHQNAHKRERSAARRHQAQRMMTLLGLPIHNSMVRSLGVQPHSLVHKTSREDTAIVARF 148

[Close]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL
Match: A0A6J1J9Y6 (zinc finger protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111482624 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 2.89e-40
Identity = 87/175 (49.71%), Postives = 95/175 (54.29%), Query Frame = 0


Query: 15  EEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFC---------- 74
           EEE+EATDQP GV ALEWL+LSLGR NKQLL ESQSSA  S KTFSCNFC          
Sbjct: 30  EEEEEATDQPAGVGALEWLNLSLGR-NKQLLPESQSSAG-SAKTFSCNFCKRVFFSSQAL 89

Query: 75  --------------------------------------------------REDTVLAARF 124
                                                             REDT + ARF
Sbjct: 90  GGHQNAHKRERSAARRHQAQRMMTLLGLPMHNSMVRSLGVQPHSLVHKTSREDTAIVARF 149

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02380 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g02380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531890.1	2.86e-72	67.39	zinc finger protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942380.1	1.80e-63	62.57	zinc finger protein 4-like [Cucurbita moschata]	[more]
XP_022982886.1	1.40e-60	62.15	zinc finger protein 4-like [Cucurbita maxima]	[more]
KAG6600301.1	1.47e-59	61.58	Zinc finger protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG70309...	[more]
KAG6589662.1	3.34e-50	59.51	Zinc finger protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW71	8.71e-64	62.57	zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111447441 PE=4 SV...	[more]
A0A6J1J0M8	6.76e-61	62.15	zinc finger protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481597 PE=4 SV=1	[more]
A0A6J1D6I0	3.40e-42	51.67	zinc finger protein 4-like OS=Momordica charantia OX=3673 GN=LOC111017766 PE=4 S...	[more]
A0A6J1E569	4.29e-42	50.29	zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430693 PE=4 SV...	[more]
A0A6J1J9Y6	2.89e-40	49.71	zinc finger protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111482624 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g02380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR47593	ZINC FINGER PROTEIN 4-LIKE	coord: 66..124 coord: 11..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g02380.1	Cp4.1LG01g02380.1	mRNA