Cp4.1LG01g02220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g02220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor ERF109-like
Location	Cp4.1LG01: 2584392 .. 2585237 (-)
RNA-Seq Expression	Cp4.1LG01g02220
Synteny	Cp4.1LG01g02220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCTATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATTAGTTGTTCCAGTACTGACGCCATTTTAGGTCCCTCTGTTTTCGAGACATGTAGCGTTTGCCGAATCGACGGTTGTTTAGGTTGCGATTTCTTTCCGTCGTCGTCTCAAGTCGATAACGAGAAGAAGAGCGGCAAAAGACGGTCGAAGAAGACTTACAGAGGCGTAAGGCAACGACCTTGGGGAAAATGGGCCGCCGAGATCCGAAACCCGAAACTCGCGACCCGAGTCTGGTTAGGGACGTTCAATACAGCCGAAGAAGCCGCTAGGGCTTACGATAAGGCAGCTTGGGAGTTCCGAGGGCCGCGAGCGAAGCTTAATTTTCCATTTACGGATGATTCGTTGCGAATGATGAGTTCGGAGCAGCAAGAACAGAGACCGGAAAATGAAATGTCGAAGAACAGTAGCAATTCGACGGCAGCGACGGCGGCAATTGGAATCGGAAATGATGATGAAATTTGGGGGAAGATTGCAAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTTTCGTAG

mRNA sequence

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCTATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATTAGTTGTTCCAGTACTGACGCCATTTTAGCGACGGCGGCAATTGGAATCGGAAATGATGATGAAATTTGGGGGAAGATTGCAAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTTTCGTAG

Coding sequence (CDS)

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCTATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATTAGTTGTTCCAGTACTGACGCCATTTTAGCGACGGCGGCAATTGGAATCGGAAATGATGATGAAATTTGGGGGAAGATTGCAAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTTTCGTAG

Protein sequence

MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILATAAIGIGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTGIWEFS

Homology

[Close]

BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: XP_023553443.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242 bits (618), Expect = 7.44e-78
Identity = 151/281 (53.74%), Postives = 151/281 (53.74%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60
           MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH
Sbjct: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60

Query: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL------------------ 120
           DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL                  
Sbjct: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLG 120

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 121 CDFFPSSSQVDNEKKSGKRRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEA 180

[Close]

BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: KAG6600333.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030989.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242 bits (617), Expect = 1.05e-77
Identity = 150/281 (53.38%), Postives = 151/281 (53.74%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60
           MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH
Sbjct: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60

Query: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL------------------ 120
           DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL                  
Sbjct: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLG 120

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 121 CDFFPPSSQVDNEKKSGKRRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEA 180

[Close]

BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: XP_022942387.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita moschata])

HSP 1 Score: 242 bits (617), Expect = 1.05e-77
Identity = 150/281 (53.38%), Postives = 151/281 (53.74%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60
           MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH
Sbjct: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60

Query: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL------------------ 120
           DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL                  
Sbjct: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLG 120

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 121 CDFFPPSSQVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEA 180

[Close]

BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: XP_022982227.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita maxima])

HSP 1 Score: 239 bits (610), Expect = 1.22e-76
Identity = 148/281 (52.67%), Postives = 150/281 (53.38%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60
           MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFM+NRFWH
Sbjct: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMDNRFWH 60

Query: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL------------------ 120
           DFQIPPPTFDCATS ASASASDSFSVSGTTSSISCSSTDAIL                  
Sbjct: 61  DFQIPPPTFDCATSVASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLG 120

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 121 CDFFPPSSQVDNEKKSGKRRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEA 180

[Close]

BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: XP_008456122.1 (PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis melo] >TYK25954.1 ethylene-responsive transcription factor ERF109 [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (332), Expect = 9.00e-35
Identity = 110/281 (39.15%), Postives = 121/281 (43.06%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESY-FSLPPPYLRP-ISADQELSVIVTALTSVVSGTAFDSDF-MENR 60
           M+SLKRSRSTE  +S+ FSLPPPY RP IS DQELSVIVTALTSVVSGTA D  + M + 
Sbjct: 1   MNSLKRSRSTESPQSFHFSLPPPYFRPCISTDQELSVIVTALTSVVSGTASDLHYSMADG 60

Query: 61  FWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAI---------------- 120
           FW   Q PPP+FD         ASDSFS S TTSS+S SSTDAI                
Sbjct: 61  FWRQNQTPPPSFDSP-------ASDSFSASATTSSLSSSSTDAIFSPSVFETCSVCQIEG 120

Query: 121 ------------------------------------------------LAT--------- 151
                                                           LAT         
Sbjct: 121 CLGCNFFPPSSSQVNVEKKIGNKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNT 180

[Close]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL
Match: A0A6J1FQ36 (ethylene-responsive transcription factor ERF109-like OS=Cucurbita moschata OX=3662 GN=LOC111447448 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 5.11e-78
Identity = 150/281 (53.38%), Postives = 151/281 (53.74%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60
           MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH
Sbjct: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60

Query: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL------------------ 120
           DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL                  
Sbjct: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLG 120

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 121 CDFFPPSSQVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEA 180

[Close]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL
Match: A0A6J1IW36 (ethylene-responsive transcription factor ERF109-like OS=Cucurbita maxima OX=3661 GN=LOC111481117 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 5.89e-77
Identity = 148/281 (52.67%), Postives = 150/281 (53.38%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWH 60
           MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFM+NRFWH
Sbjct: 1   MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMDNRFWH 60

Query: 61  DFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAIL------------------ 120
           DFQIPPPTFDCATS ASASASDSFSVSGTTSSISCSSTDAIL                  
Sbjct: 61  DFQIPPPTFDCATSVASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLG 120

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 121 CDFFPPSSQVDNEKKSGKRRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEA 180

[Close]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL
Match: A0A5D3DQV2 (Ethylene-responsive transcription factor ERF109 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00140 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 4.36e-35
Identity = 110/281 (39.15%), Postives = 121/281 (43.06%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESY-FSLPPPYLRP-ISADQELSVIVTALTSVVSGTAFDSDF-MENR 60
           M+SLKRSRSTE  +S+ FSLPPPY RP IS DQELSVIVTALTSVVSGTA D  + M + 
Sbjct: 1   MNSLKRSRSTESPQSFHFSLPPPYFRPCISTDQELSVIVTALTSVVSGTASDLHYSMADG 60

Query: 61  FWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAI---------------- 120
           FW   Q PPP+FD         ASDSFS S TTSS+S SSTDAI                
Sbjct: 61  FWRQNQTPPPSFDSP-------ASDSFSASATTSSLSSSSTDAIFSPSVFETCSVCQIEG 120

Query: 121 ------------------------------------------------LAT--------- 151
                                                           LAT         
Sbjct: 121 CLGCNFFPPSSSQVNVEKKIGNKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNT 180

[Close]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL
Match: A0A1S3C3R9 (ethylene-responsive transcription factor ERF109 OS=Cucumis melo OX=3656 GN=LOC103496155 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 4.36e-35
Identity = 110/281 (39.15%), Postives = 121/281 (43.06%), Query Frame = 0


Query: 1   MSSLKRSRSTEFSESY-FSLPPPYLRP-ISADQELSVIVTALTSVVSGTAFDSDF-MENR 60
           M+SLKRSRSTE  +S+ FSLPPPY RP IS DQELSVIVTALTSVVSGTA D  + M + 
Sbjct: 1   MNSLKRSRSTESPQSFHFSLPPPYFRPCISTDQELSVIVTALTSVVSGTASDLHYSMADG 60

Query: 61  FWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAI---------------- 120
           FW   Q PPP+FD         ASDSFS S TTSS+S SSTDAI                
Sbjct: 61  FWRQNQTPPPSFDSP-------ASDSFSASATTSSLSSSSTDAIFSPSVFETCSVCQIEG 120

Query: 121 ------------------------------------------------LAT--------- 151
                                                           LAT         
Sbjct: 121 CLGCNFFPPSSSQVNVEKKIGNKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNT 180

[Close]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL
Match: A0A0A0L9A3 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G207390 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.19e-17
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 104 TAAIGIGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTGIWEFS 151
           +A IGIGN+DEIWGKIAKDE DQWMS+LMT HGG+S DSAS G WEFS
Sbjct: 227 SAGIGIGNEDEIWGKIAKDEMDQWMSTLMTDHGGDSSDSASIGTWEFS 274

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02220 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g02220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553443.1	7.44e-78	53.74	ethylene-responsive transcription factor ERF109-like [Cucurbita pepo subsp. pepo...	[more]
KAG6600333.1	1.05e-77	53.38	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022942387.1	1.05e-77	53.38	ethylene-responsive transcription factor ERF109-like [Cucurbita moschata]	[more]
XP_022982227.1	1.22e-76	52.67	ethylene-responsive transcription factor ERF109-like [Cucurbita maxima]	[more]
XP_008456122.1	9.00e-35	39.15	PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis melo] >TYK25...	[more]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQ36	5.11e-78	53.38	ethylene-responsive transcription factor ERF109-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1IW36	5.89e-77	52.67	ethylene-responsive transcription factor ERF109-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3DQV2	4.36e-35	39.15	Ethylene-responsive transcription factor ERF109 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C3R9	4.36e-35	39.15	ethylene-responsive transcription factor ERF109 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L9A3	6.19e-17	79.17	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G207390 PE=...	[more]

BLAST of Cp4.1LG01g02220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g02220.1	Cp4.1LG01g02220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity