Cp4.1LG01g01540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g01540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG01: 2952479 .. 2952838 (-)
RNA-Seq Expression	Cp4.1LG01g01540
Synteny	Cp4.1LG01g01540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTCCGCCATCTTGATTTGAGTATGTCAACCTGCTTGAAAGACCTTGTATTTTCTTTGTCGTTGCTTTTCTGCTGGGAACTTTTGAATCCTTTGCAGTTGTTGGTATCAAGTGCTTTCTACTTCACTTCTCTTACTTGTCATGCCTTTGAATTGATTTCCTTCTATCGCTACTCTCTGTTCTTTGTGATTCTGTTACTTTGTCTGTCCATGCTGTATGGATCCACTTCTATTGCTGCTCTGCTGTGTGCATCTGTTTTGAAGAAAGTTGTTGGCAGCACAAACTTTGTCAAGCTTGGATTTGTATGGTACTTGAAGCCCTTTTGTATCTCATCTTTAATGGTTAAGGGTTTTTGA

mRNA sequence

ATGTGGCTCCGCCATCTTGATTTGAGTATGTCAACCTGCTTGAAAGACCTTGTATTTTCTTTGTCGTTGCTTTTCTGCTGGGAACTTTTGAATCCTTTGCAGTTGTTGGTATCAAGTGCTTTCTACTTCACTTCTCTTACTTGTCATGCCTTTGAATTGATTTCCTTCTATCGCTACTCTCTGTTCTTTGTGATTCTGTTACTTTGTCTGTCCATGCTGTATGGATCCACTTCTATTGCTGCTCTGCTGTGTGCATCTGTTTTGAAGAAAGTTGTTGGCAGCACAAACTTTGTCAAGCTTGGATTTGTATGGTACTTGAAGCCCTTTTGTATCTCATCTTTAATGGTTAAGGGTTTTTGA

Coding sequence (CDS)

ATGTGGCTCCGCCATCTTGATTTGAGTATGTCAACCTGCTTGAAAGACCTTGTATTTTCTTTGTCGTTGCTTTTCTGCTGGGAACTTTTGAATCCTTTGCAGTTGTTGGTATCAAGTGCTTTCTACTTCACTTCTCTTACTTGTCATGCCTTTGAATTGATTTCCTTCTATCGCTACTCTCTGTTCTTTGTGATTCTGTTACTTTGTCTGTCCATGCTGTATGGATCCACTTCTATTGCTGCTCTGCTGTGTGCATCTGTTTTGAAGAAAGTTGTTGGCAGCACAAACTTTGTCAAGCTTGGATTTGTATGGTACTTGAAGCCCTTTTGTATCTCATCTTTAATGGTTAAGGGTTTTTGA

Protein sequence

MWLRHLDLSMSTCLKDLVFSLSLLFCWELLNPLQLLVSSAFYFTSLTCHAFELISFYRYSLFFVILLLCLSMLYGSTSIAALLCASVLKKVVGSTNFVKLGFVWYLKPFCISSLMVKGF

Homology

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BLAST of Cp4.1LG01g01540 vs. NCBI nr
Match: KAG6600398.1 (Malate dehydrogenase, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.4 bits (124), Expect = 3.00e-05
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 72  MLYGSTSIAALLCASVLKKVVGSTNFVKLGF 102
           MLYGSTSIAALLCASVL KVVGST+FV LGF
Sbjct: 1   MLYGSTSIAALLCASVLSKVVGSTSFVNLGF 31

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g01540 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g01540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600398.1	3.00e-05	90.32	Malate dehydrogenase, mitochondrial, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of Cp4.1LG01g01540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g01540 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g01540.1	Cp4.1LG01g01540.1	mRNA