Cp4.1LG01g00950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g00950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	polyadenylate-binding protein-interacting protein 9-like
Location	Cp4.1LG01: 3370637 .. 3374632 (+)
RNA-Seq Expression	Cp4.1LG01g00950
Synteny	Cp4.1LG01g00950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAAGAAACGGACGGCGGCAAAAAGAGGGGGGAGAAACACACCTCTTCACTAACTTTTAAGAGCGATCCAAATCCGAAGAGGAATAAACCCTACGAGAGTTTGGCGTTAATAGGCGAAACCCAAATCCCAATTTCTTTTCTCGATCATTCCATCAAGAGCCCTAGATCACATTCTCTGTTTTTCTTTTAAAAAATCCTTTCTTTTTGCTTCACCTCCTTCCATTTCTGGCCTCTCTCAAATGGGTTCTCTTTATACTTTCTTTTAATGCCAATTGGTGTTTATCCGAGTGGTGGGAATTTACGGATGGACTGAGAGACCTTCTATACTTCCAATTTTGTTTGCTAATTTACTTTGTACTTTGTATATTACATTAACATATACATATATACTTTATATTTCTATTTGCAATTCGGTTTTTTGGCATCTGGGTGTTGATTCTATGGCTGTGGTTGCTGAGGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGGTATTCTTTTATTTTGATCTGTTTTTTTTTTTTTTTTCTTGTTTAGAGCTTGATGTCGAGATTCAATCCGTGATTCTGTTTGATCTGGGATTGTTTGTGTTCTTGTTGATTGATTTTGAGTTAATGTGTGTGTGTTTTAATGTGATGAATTTTGCTCTGGGGTGTCTGGATCAAATTCCTGGAAAGGATCATTGTGCTATTTGATTTATTTAATGTCTCGACACTGAAAATTATTGACGATGCCTAAATTCAATCCGTAGTTTCATTGCCAGAATTGAATTGAATTATACTTTTTGCTTCATCAGGGATTGTTTGTACTTACTGATTGATTCCAAGTTAATGTATGTATGTTTTTAATGTGGTGAAATTCACTCTTGTGATGGGAATATTTCCTAATTGAGTAATTGGAATTGTTCACTGTGCTATTGGTATTATTTACAGTTCTTGACTCTGAAAATTATTTTAGCAATCTGTGTGTTGATCACTTCCCATAACAACTGAATTGCACTGCAATGTTTAGGAATCATATCATGTAATTGACTGCTATAGTTTTCTATCACATTGAGCTCAGTTCACATCTCCGAACGAGAATTTTATGGTTCGGATTCTTGATAATACTGGCCATTCCTGTTTTGATTTGTCTGATTCACCTTCCAATTATCTATTAAATCACCTCAGATCTGTTTGGTATAATGATAACTCGTCATTATCTGTTTATGTTGCTACAAGTCTTTTATTATTACGGATGATATATCGATTCTTACTTCTTTTCCCATAACTTCTAAAGAATTTATCAAGAGATCCATATGCTTTTATGTTACTTTCTGTTTGTTACTGATACACCCTGGTCTACTCGCTTTCCTTGCAAATTTACTTAATGGGGATGTTCTCATTTAATACTTTAGATTCCAACGTCCCGACTGTCTTGAGCTTACTTGGAACGATAAATGTAACTATATTATTATCCGCCTCAATCCTAAGAAATAATCAAAATACATGCTTCATCATATTGTCTTACGTTCTTGTCTCTGCGTTAGACGCTTACCCTGTTTTAGTTTTCTCGTGTCCAGTATTAGGATCATAAGACTAAAATAGTATGAAAATGCTTGTCTAGATTGTAGCTCGTTGATTGAGCGAACGACAATAACTAGGACAGTTCAGTTTTGTGATTCTCGTACGCTCATTATTGACTGTGTTGAGATTATCTGTGGTTAAATACAAAAGATATAGCCATATAGGAATGAAACATATGGGCAGCCGCCTGTAACATGCCGAAAATATTCAGTAAAATAAGCGTTGCATCTTAGTTGTGTCTATTCGACTGGATAAAGTTGTGATGCTTTTATAAATTCTTGTCATTGGATAAAATTTCATTTCTTGTACTTGTTCCATGCTATGTTTTTACGCGCTTCCTTCTCGCTTCATTCTTCAGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTGAGTATCATATCTTTATAAGCCTAGAGTCTTATTATGATGCATTGAGATAATTTTGAAATTAAAAGCTTGTTTCTTATCTAGGTCTCTGAAGAGGAGCTTGCCAAGGTGTTCAGGGAGTATTGTGGATATGTAAGTATACTCATTCTTCGGGTTCTGTCATTTTGTCGGGTGGGTGGAAGTCTAGAGTGAATGTAGTTGATTGATGTTTTTAAACGGTGATGTCGAGGTGGGTTGCCACTGGACTCGGTTCTGGCGTTCAATCGTAACTATCGTCTTATTTGCATTCATCTTAATGAAAAGACATGCCATGGGATGATAGCTATTCTTTTATAGGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCTTTTGTGGAGTTCGCTAATGAGCGTAAGTTGATCTTTGCACCTTGAAATTCTTTCCAAGGAGAGATATGTAGTTTGATCTTACATGCCACATGGAATGTTTTGGGAACAGCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTAGGGTCGTATCCAATTAAGGTATTGCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACCTTTCTTCCCAAGGTACGGTGTTATCCTTTCTCTTCCTAAATGGATATATACATATACGTATACATACATACATATATATATATATCTTTATGCTCCCTACAAAATTTCTGTTGTGACAGTCAAATGATGAATGGGACATGTGTACCAGGACTATCTACTGCACAAATATAGATAAGAAGGTACTATTACTTAACTGTTTGAAATGGAATGGAACAATGTTGAACTGATGGGGTTTTAAAATCTTTAATCTTGTGTTGTTTTTTTGTTTATAGGTATCTCAGGTTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAAGATATAAACAGACAGCATATTCGTTTTTCGACGATGTTAACCGACTGTTATTGACAAGAAAATCCTCCTTTTGAATTTAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGTAATCTTTTTCTCTAACGCATTACACTAAGTTCGTCTCGTCTTCTGCTAGTTTTTATTGATAAAGAAGCTCAGTATGAACCTTAGAACATTACATAAAGTTCTTCACTTTGTTGAGATGAATCTCTTTAGCTCTGTTTGTTTCCATGAGCAGGCAGAGACTGCTCTCCAAGCCCTCAACTGTAGTGGCATGATCTTGGGTACTCAGCCAATCAGGTATGGTTTCTTTACTGCTAACACCCTCTCACTTTCCCTACATTAGTTCAGATACATATTTTTTTGTGAAACTTTGTAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCTTAGAAGGCAAATATTCTCCAATATCAGTGGATGAAATTCAGACAGTGTATGAATTGTCCCAAGTGTTGAGAAGTTGGCTAGTTTCTTGGCTGAACTTGTTTATAACTCTTCTTCAGTTATAGTTCATTTGGCTGAGTTCCAATCTTTGACAATTATTTCCCTCCCCGACAAGTTCTTAGTTTTTTCTTTCGATCGCTACTAGTTAATGTTAATGATGTTGGAGTTGTTACTATGTTATGCATTACTTTCATCTCTTGAGTTTTATGTTGCTTGAACAGAGACGTATCAATCAAGAGATTAAAAGTTTATTGAATCC

mRNA sequence

TAATAAGAAACGGACGGCGGCAAAAAGAGGGGGGAGAAACACACCTCTTCACTAACTTTTAAGAGCGATCCAAATCCGAAGAGGAATAAACCCTACGAGAGTTTGGCGTTAATAGGCGAAACCCAAATCCCAATTTCTTTTCTCGATCATTCCATCAAGAGCCCTAGATCACATTCTCTGTTTTTCTTTTAAAAAATCCTTTCTTTTTGCTTCACCTCCTTCCATTTCTGGCCTCTCTCAAATGGGTTCTCTTTATACTTTCTTTTAATGCCAATTGGTGTTTATCCGAGTGGTGGGAATTTACGGATGGACTGAGAGACCTTCTATACTTCCAATTTTGTTTGCTAATTTACTTTGTACTTTGTATATTACATTAACATATACATATATACTTTATATTTCTATTTGCAATTCGGTTTTTTGGCATCTGGGTGTTGATTCTATGGCTGTGGTTGCTGAGGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTGTTCAGGGAGTATTGTGGATATGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCTTTTGTGGAGTTCGCTAATGAGCCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTATCTCAGGTTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGCAGAGACTGCTCTCCAAGCCCTCAACTGTAGTGGCATGATCTTGGGTACTCAGCCAATCAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCTTAGAAGGCAAATATTCTCCAATATCAGTGGATGAAATTCAGACAGTGTATGAATTGTCCCAAGTGTTGAGAAGTTGGCTAGTTTCTTGGCTGAACTTGTTTATAACTCTTCTTCAGTTATAGTTCATTTGGCTGAGTTCCAATCTTTGACAATTATTTCCCTCCCCGACAAGTTCTTAGTTTTTTCTTTCGATCGCTACTAGTTAATGTTAATGATGTTGGAGTTGTTACTATGTTATGCATTACTTTCATCTCTTGAGTTTTATGTTGCTTGAACAGAGACGTATCAATCAAGAGATTAAAAGTTTATTGAATCC

Coding sequence (CDS)

ATGGCTGTGGTTGCTGAGGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTGTTCAGGGAGTATTGTGGATATGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCTTTTGTGGAGTTCGCTAATGAGCCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTATCTCAGGTTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGCAGAGACTGCTCTCCAAGCCCTCAACTGTAGTGGCATGATCTTGGGTACTCAGCCAATCAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCTTAG

Protein sequence

MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPGSIKPS

Homology

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BLAST of Cp4.1LG01g00950 vs. ExPASy Swiss-Prot
Match: Q9LRR6 (Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana OX=3702 GN=CID9 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-61
Identity = 148/299 (49.50%), Postives = 176/299 (58.86%), Query Frame = 0


Query: 18  DPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPA 77
           D + + +S  D HKL  MF  LNPLAKEFFPS Y             N   +    F PA
Sbjct: 39  DSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPK---------KNNQVAKANQFLPA 98

Query: 78  DQL---------------LHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSD 137
           D                   +DN R+RR  N +QGRRR+  R  +AQ+E+S+ RTVYVSD
Sbjct: 99  DDFETTKKQSGEEFDLDAKKDDNTRKRR--NYSQGRRRLTGRISKAQREDSIRRTVYVSD 158

Query: 138 IDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM--- 197
           ID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA++  A  A  L GTM   
Sbjct: 159 IDQSVTEEGLAGLFSN-CGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGF 218

Query: 198 ------------------------------------------VSQVEVKNFFETSCGEVT 257
                                                     VSQ +V+NFFE++CGEVT
Sbjct: 219 YPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVT 278

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BLAST of Cp4.1LG01g00950 vs. ExPASy Swiss-Prot
Match: Q9C8M0 (Polyadenylate-binding protein-interacting protein 8 OS=Arabidopsis thaliana OX=3702 GN=CID8 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-54
Identity = 142/290 (48.97%), Postives = 178/290 (61.38%), Query Frame = 0


Query: 20  EMKPKS--EFD-AHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQP 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +F  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSD--DFVI 97

Query: 80  ADQLLHNDNDR----RRRNDNNNQGRR-RMNNRSIRAQQEESVMRTVYVSDIDKDVSEEE 139
           A +    DN +    RRR +N NQGRR R+  R+ +AQ+E+S+ RTVYVSDID+ V+EE 
Sbjct: 98  AIKPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEG 157

Query: 140 LAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV----------- 199
           LA +F   CG V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+           
Sbjct: 158 LAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSK 217

Query: 200 ----------------------------------SQVEVKNFFETSCGEVTRLRLLGDQL 257
                                             ++ +V  FF+++CGEVTRLRLLGDQ+
Sbjct: 218 TAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV 277

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BLAST of Cp4.1LG01g00950 vs. ExPASy Swiss-Prot
Match: Q9LPI5 (Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=3702 GN=CID11 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.3e-48
Identity = 126/274 (45.99%), Postives = 157/274 (57.30%), Query Frame = 0


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKN---FQPADQLLHND 87
           D  +L E+FS LNP+A+EF P S +          +     S  +N       +    N+
Sbjct: 82  DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNE 141

Query: 88  NDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVN 147
           N   RR  +  QG+RRMN R+  AQ+E+ + RTVYVSD+D+ V+EE+LA +F   CG V 
Sbjct: 142 NGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVS-CGQVV 201

Query: 148 DCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM------------------------- 207
           DCRICGDP+SVLRFAF+EF +E  A  A  LSGTM                         
Sbjct: 202 DCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPR 261

Query: 208 --------------------VSQVEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMA 254
                               V+Q +VK FFE+ CGEV RLRLLGD  HSTRIAFVEF MA
Sbjct: 262 TEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMA 321

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BLAST of Cp4.1LG01g00950 vs. ExPASy Swiss-Prot
Match: Q9S7N9 (Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana OX=3702 GN=CID12 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.4e-46
Identity = 124/270 (45.93%), Postives = 155/270 (57.41%), Query Frame = 0


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ--FYYHNYNRSSMKNFQPADQLLHNDN 87
           D  +L E+ S LNP+AKEF P S +      F   F+  N    +  NF      ++ D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFP-----VNEDG 124

Query: 88  DRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVND 147
             RR+     QG+RRMN R+  AQ+EE + RTVYVSDID+ V+EE+LA +F  + G V D
Sbjct: 125 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGF-GQVVD 184

Query: 148 CRICGDPHSVLRFAFVEFANEPSARAATGLSGTM-------------------------- 207
           CRICGDP+SVLRFAF+EF +E  AR A  LSGTM                          
Sbjct: 185 CRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRT 244

Query: 208 -------------------VSQVEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAE 251
                              ++Q ++K FFE+ CGEV RLRLLGD  H TRI FVEF MAE
Sbjct: 245 EDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAE 304

[Close]

BLAST of Cp4.1LG01g00950 vs. ExPASy Swiss-Prot
Match: Q9SG10 (Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana OX=3702 GN=CID10 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.3e-46
Identity = 124/295 (42.03%), Postives = 161/295 (54.58%), Query Frame = 0


Query: 4   VAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYY 63
           + E + +V     F    +  +  +   LA+ FS LNP+A+EF P S +       Q   
Sbjct: 62  INETAQKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQEFVPPSLARS-----QSGV 121

Query: 64  HNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDI 123
                    NF    +L   ++   RR  +  QG+RRMN R+  AQ+++ + RTVYVSDI
Sbjct: 122 LRNGLGFTNNFAAPPKLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDI 181

Query: 124 DKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM---- 183
           D+ V+EE LA VF   CG V DCR+CGDP+SVLRFAF+EF NE  ARAA  +SGT+    
Sbjct: 182 DQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFY 241

Query: 184 -----------------------------------------VSQVEVKNFFETSCGEVTR 243
                                                    ++Q+++K FFE  CGEV R
Sbjct: 242 PLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHR 301

Query: 244 LRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTR 254
           LR LGD  H TRIAFVEFAMAE+A+ AL+CSG++LG  PIRVSPSKTPVRP   R
Sbjct: 302 LR-LGDYHHQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: XP_023531181.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 486 bits (1252), Expect = 4.71e-172
Identity = 260/305 (85.25%), Postives = 260/305 (85.25%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQVEVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQVEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: XP_022942237.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >XP_022942238.1 polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >KAG6600479.1 Polyadenylate-binding protein-interacting protein 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 485 bits (1248), Expect = 1.92e-171
Identity = 258/305 (84.59%), Postives = 260/305 (85.25%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVA+DSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ+EVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: XP_022982064.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita maxima])

HSP 1 Score: 480 bits (1236), Expect = 1.29e-169
Identity = 257/305 (84.26%), Postives = 259/305 (84.92%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVAEDS+EVAAAKNFDPEMKPKSEFDA KLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVAEDSSEVAAAKNFDPEMKPKSEFDALKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ+EVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: KAG7031122.1 (Polyadenylate-binding protein-interacting protein 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459 bits (1180), Expect = 3.28e-161
Identity = 250/305 (81.97%), Postives = 252/305 (82.62%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVA+DSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKV        NDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKV--------NDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ+EVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 297

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: XP_022142940.1 (polyadenylate-binding protein-interacting protein 9 [Momordica charantia])

HSP 1 Score: 421 bits (1081), Expect = 5.19e-146
Identity = 228/305 (74.75%), Postives = 240/305 (78.69%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAED  E AAAKNFDP MKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR +FQ
Sbjct: 1   MAAVAEDIGEAAAAKNFDPNMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQEFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYY N NRSS KNFQ ADQLLH+DN+RRRR D NNQGRRR+N+RS+RAQQEES+ RTVYV
Sbjct: 61  FYYQNNNRSSTKNFQVADQLLHSDNNRRRRQDFNNQGRRRLNSRSVRAQQEESIRRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA  L GTMV
Sbjct: 121 SDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAALNLGGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ EVK+FFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFA+AETALQALNCSGMILG+QPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGSQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. ExPASy TrEMBL
Match: A0A6J1FUB0 (polyadenylate-binding protein-interacting protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111447348 PE=4 SV=1)

HSP 1 Score: 485 bits (1248), Expect = 9.28e-172
Identity = 258/305 (84.59%), Postives = 260/305 (85.25%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVA+DSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ+EVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. ExPASy TrEMBL
Match: A0A6J1J3J1 (polyadenylate-binding protein-interacting protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481021 PE=4 SV=1)

HSP 1 Score: 480 bits (1236), Expect = 6.25e-170
Identity = 257/305 (84.26%), Postives = 259/305 (84.92%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVAEDS+EVAAAKNFDPEMKPKSEFDA KLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVAEDSSEVAAAKNFDPEMKPKSEFDALKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ+EVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. ExPASy TrEMBL
Match: A0A6J1CMC4 (polyadenylate-binding protein-interacting protein 9 OS=Momordica charantia OX=3673 GN=LOC111012929 PE=4 SV=1)

HSP 1 Score: 421 bits (1081), Expect = 2.51e-146
Identity = 228/305 (74.75%), Postives = 240/305 (78.69%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAED  E AAAKNFDP MKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR +FQ
Sbjct: 1   MAAVAEDIGEAAAAKNFDPNMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQEFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYV 120
           FYY N NRSS KNFQ ADQLLH+DN+RRRR D NNQGRRR+N+RS+RAQQEES+ RTVYV
Sbjct: 61  FYYQNNNRSSTKNFQVADQLLHSDNNRRRRQDFNNQGRRRLNSRSVRAQQEESIRRTVYV 120

Query: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA  L GTMV
Sbjct: 121 SDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAALNLGGTMV 180

Query: 181 ---------------------------------------------SQVEVKNFFETSCGE 240
                                                        SQ EVK+FFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 260
           VTRLRLLGDQLHSTRIAFVEFA+AETALQALNCSGMILG+QPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGSQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Cp4.1LG01g00950 vs. ExPASy TrEMBL
Match: A0A5A7VBL7 (Polyadenylate-binding protein-interacting protein 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001000 PE=4 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 4.99e-144
Identity = 228/304 (75.00%), Postives = 238/304 (78.29%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAEDS+E AA KNFD  M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDHNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNN-RSIRAQQEESVMRTVY 120
           FYY N NRS  KNFQ ADQLLH+DN+RRRR D NNQGRRRMNN RS+RAQQEES+ RTVY
Sbjct: 61  FYYQNNNRSLAKNFQVADQLLHSDNNRRRRPDFNNQGRRRMNNNRSVRAQQEESIRRTVY 120

Query: 121 VSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTV 180

Query: 181 V---------------------------------------------SQVEVKNFFETSCG 240
           V                                             SQ EVK+FFETSCG
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 258
           EVTRLRLLGDQLHSTRIAFVEFA+AETALQALNCSGMILG QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Cp4.1LG01g00950 vs. ExPASy TrEMBL
Match: A0A1S3BSA4 (polyadenylate-binding protein-interacting protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492975 PE=4 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 4.99e-144
Identity = 228/304 (75.00%), Postives = 238/304 (78.29%), Query Frame = 0


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAEDS+E AA KNFD  M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDHNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNN-RSIRAQQEESVMRTVY 120
           FYY N NRS  KNFQ ADQLLH+DN+RRRR D NNQGRRRMNN RS+RAQQEES+ RTVY
Sbjct: 61  FYYQNNNRSLAKNFQVADQLLHSDNNRRRRPDFNNQGRRRMNNNRSVRAQQEESIRRTVY 120

Query: 121 VSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTV 180

Query: 181 V---------------------------------------------SQVEVKNFFETSCG 240
           V                                             SQ EVK+FFETSCG
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 258
           EVTRLRLLGDQLHSTRIAFVEFA+AETALQALNCSGMILG QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR 10
Match: AT3G14450.1 (CTC-interacting domain 9 )

HSP 1 Score: 238.0 bits (606), Expect = 8.3e-63
Identity = 148/299 (49.50%), Postives = 176/299 (58.86%), Query Frame = 0


Query: 18  DPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPA 77
           D + + +S  D HKL  MF  LNPLAKEFFPS Y             N   +    F PA
Sbjct: 39  DSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPK---------KNNQVAKANQFLPA 98

Query: 78  DQL---------------LHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSD 137
           D                   +DN R+RR  N +QGRRR+  R  +AQ+E+S+ RTVYVSD
Sbjct: 99  DDFETTKKQSGEEFDLDAKKDDNTRKRR--NYSQGRRRLTGRISKAQREDSIRRTVYVSD 158

Query: 138 IDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM--- 197
           ID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA++  A  A  L GTM   
Sbjct: 159 IDQSVTEEGLAGLFSN-CGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGF 218

Query: 198 ------------------------------------------VSQVEVKNFFETSCGEVT 257
                                                     VSQ +V+NFFE++CGEVT
Sbjct: 219 YPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVT 278

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR 10
Match: AT1G53650.1 (CTC-interacting domain 8 )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 142/290 (48.97%), Postives = 178/290 (61.38%), Query Frame = 0


Query: 20  EMKPKS--EFD-AHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQP 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +F  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSD--DFVI 97

Query: 80  ADQLLHNDNDR----RRRNDNNNQGRR-RMNNRSIRAQQEESVMRTVYVSDIDKDVSEEE 139
           A +    DN +    RRR +N NQGRR R+  R+ +AQ+E+S+ RTVYVSDID+ V+EE 
Sbjct: 98  AIKPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEG 157

Query: 140 LAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV----------- 199
           LA +F   CG V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+           
Sbjct: 158 LAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSK 217

Query: 200 ----------------------------------SQVEVKNFFETSCGEVTRLRLLGDQL 257
                                             ++ +V  FF+++CGEVTRLRLLGDQ+
Sbjct: 218 TAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV 277

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR 10
Match: AT1G53650.2 (CTC-interacting domain 8 )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 141/286 (49.30%), Postives = 177/286 (61.89%), Query Frame = 0


Query: 20  EMKPKS--EFD-AHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQP 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +F  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSD--DFVI 97

Query: 80  ADQLLHNDNDRRRRNDNNNQGRR-RMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKV 139
           A +    DN +RR  +N NQGRR R+  R+ +AQ+E+S+ RTVYVSDID+ V+EE LA +
Sbjct: 98  AIKPSGEDNKKRR--NNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGL 157

Query: 140 FREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV--------------- 199
           F   CG V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+               
Sbjct: 158 FSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAIL 217

Query: 200 ------------------------------SQVEVKNFFETSCGEVTRLRLLGDQLHSTR 257
                                         ++ +V  FF+++CGEVTRLRLLGDQ+HSTR
Sbjct: 218 PVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTR 277

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR 10
Match: AT1G32790.1 (CTC-interacting domain 11 )

HSP 1 Score: 193.4 bits (490), Expect = 2.3e-49
Identity = 126/274 (45.99%), Postives = 157/274 (57.30%), Query Frame = 0


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKN---FQPADQLLHND 87
           D  +L E+FS LNP+A+EF P S +          +     S  +N       +    N+
Sbjct: 82  DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNE 141

Query: 88  NDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVN 147
           N   RR  +  QG+RRMN R+  AQ+E+ + RTVYVSD+D+ V+EE+LA +F   CG V 
Sbjct: 142 NGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVS-CGQVV 201

Query: 148 DCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM------------------------- 207
           DCRICGDP+SVLRFAF+EF +E  A  A  LSGTM                         
Sbjct: 202 DCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPR 261

Query: 208 --------------------VSQVEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMA 254
                               V+Q +VK FFE+ CGEV RLRLLGD  HSTRIAFVEF MA
Sbjct: 262 TEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMA 321

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR 10
Match: AT4G10610.1 (CTC-interacting domain 12 )

HSP 1 Score: 188.0 bits (476), Expect = 9.8e-48
Identity = 124/270 (45.93%), Postives = 155/270 (57.41%), Query Frame = 0


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ--FYYHNYNRSSMKNFQPADQLLHNDN 87
           D  +L E+ S LNP+AKEF P S +      F   F+  N    +  NF      ++ D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFP-----VNEDG 124

Query: 88  DRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVND 147
             RR+     QG+RRMN R+  AQ+EE + RTVYVSDID+ V+EE+LA +F  + G V D
Sbjct: 125 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGF-GQVVD 184

Query: 148 CRICGDPHSVLRFAFVEFANEPSARAATGLSGTM-------------------------- 207
           CRICGDP+SVLRFAF+EF +E  AR A  LSGTM                          
Sbjct: 185 CRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRT 244

Query: 208 -------------------VSQVEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAE 251
                              ++Q ++K FFE+ CGEV RLRLLGD  H TRI FVEF MAE
Sbjct: 245 EDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAE 304

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRR6	1.2e-61	49.50	Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana OX=3...	[more]
Q9C8M0	1.8e-54	48.97	Polyadenylate-binding protein-interacting protein 8 OS=Arabidopsis thaliana OX=3...	[more]
Q9LPI5	3.3e-48	45.99	Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=...	[more]
Q9S7N9	1.4e-46	45.93	Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana OX=...	[more]
Q9SG10	5.3e-46	42.03	Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana OX=...	[more]

BLAST of Cp4.1LG01g00950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531181.1	4.71e-172	85.25	polyadenylate-binding protein-interacting protein 9-like [Cucurbita pepo subsp. ...	[more]
XP_022942237.1	1.92e-171	84.59	polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >X...	[more]
XP_022982064.1	1.29e-169	84.26	polyadenylate-binding protein-interacting protein 9-like [Cucurbita maxima]	[more]
KAG7031122.1	3.28e-161	81.97	Polyadenylate-binding protein-interacting protein 9 [Cucurbita argyrosperma subs...	[more]
XP_022142940.1	5.19e-146	74.75	polyadenylate-binding protein-interacting protein 9 [Momordica charantia]	[more]

BLAST of Cp4.1LG01g00950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUB0	9.28e-172	84.59	polyadenylate-binding protein-interacting protein 9-like OS=Cucurbita moschata O...	[more]
A0A6J1J3J1	6.25e-170	84.26	polyadenylate-binding protein-interacting protein 9-like OS=Cucurbita maxima OX=...	[more]
A0A6J1CMC4	2.51e-146	74.75	polyadenylate-binding protein-interacting protein 9 OS=Momordica charantia OX=36...	[more]
A0A5A7VBL7	4.99e-144	75.00	Polyadenylate-binding protein-interacting protein 9 isoform X1 OS=Cucumis melo v...	[more]
A0A1S3BSA4	4.99e-144	75.00	polyadenylate-binding protein-interacting protein 9 isoform X1 OS=Cucumis melo O...	[more]

BLAST of Cp4.1LG01g00950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14450.1	8.3e-63	49.50	CTC-interacting domain 9	[more]
AT1G53650.1	1.3e-55	48.97	CTC-interacting domain 8	[more]
AT1G53650.2	1.3e-55	49.30	CTC-interacting domain 8	[more]
AT1G32790.1	2.3e-49	45.99	CTC-interacting domain 11	[more]
AT4G10610.1	9.8e-48	45.93	CTC-interacting domain 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 185..241 e-value: 1.3 score: 5.7 coord: 117..184 e-value: 1.2E-7 score: 41.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 118..182 e-value: 1.4E-10 score: 40.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 116..190 score: 12.185116
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 181..245 score: 9.319809
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..180 e-value: 1.4E-14 score: 56.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 181..241 e-value: 1.6E-9 score: 39.5
IPR009818	Ataxin-2, C-terminal	PFAM	PF07145	PAM2	coord: 35..51 e-value: 5.3E-5 score: 22.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..106
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 180..254
None	No IPR available	PANTHER	PTHR32343:SF22	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9	coord: 1..180
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..180
None	No IPR available	PANTHER	PTHR32343:SF22	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9	coord: 180..254
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 180..253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 86..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00950.1	Cp4.1LG01g00950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding