Cp4.1LG01g00780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g00780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description60S ribosomal protein L10
LocationCp4.1LG01: 3400766 .. 3402765 (+)
RNA-Seq ExpressionCp4.1LG01g00780
SyntenyCp4.1LG01g00780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGGGTGAAAAACGAAGGAAGGCGGGATAATACGTGTTGTTCAAGTAGGAAAAAAAGGGCATTCGGCCCAATTTCTCCGTCCAAATCTGCTATAAAAAGGTTTAACAGCCACATTGAATCGCTGAATCTCGTCGCGCCGCCGCCACTTCTACAACTCATCTCTCTGTCGGTGGTACGGTAGCTATTTTTTCTTTGTTTCTTTTCGTTGTAATCTTTTGTTCGATGGAATTTTTCATGTTTGTAATTTTCTGAACCCGAAACTAGTCATTGCGGTGTTAGCGTTGCATTTTGAAATCGGAGATTAGTTTTTGTCTTGAGTATGGATCTGGAGCATTTTAGGGTAACCTATCCTGCGAGCATTGTGGTTAATGATGATAGTAGTTGAAAAATGAATGAAATGATTTGTTCTCTAAGTGAAAAATAAAATGTGCAAAATGGGATTTGGTATGGTTGCATTTTCTTGGCCTCTGTTTCGTAGATTGAAGGGAGGACCATGAAGAATGAAATTGGCTGATCTTGTGCAACCCATGACTGCCCAGATTTGTACTGCTGGTGGTCAATATTCGCCTGGACATGATGTTTGCCTTACTCATCTGAGTCTCTTCCCATCACACCAATAAATTTGATAGTCTATGTTTTTGTATTGATGGATTTTTGCTCTAGTTATTGGCACCGTTGTTTTTGTATTGAGTTTGTTTATGTATGCCCCCTTGAGTTTAACCAGGGGATTTGAATTATGATGCACTAAAGAGTTGACAAAAAAAACTTTTGGTTCAGTTGGATTGGATCAGGGCATCATATTATTAAGATATTAAAGGTTGGGTTGTGTCATAAACTAGTTTCAGAAATTATTATACGGTAGCTTCTGTGTCATATAATTAAGGACGAGTGGAAGGTGATGATTGAAGCAGGTACTTATGATAATCAAGCATATCTTATTGTTCTCCTGGTGCGGCTACGTGTAGTTGTGCCGAGCTTCAAGGATATGTCTGTATGATTTACAAGACTGCTCTCTGATTCATTCTCTGTTCATTATATTTTATGATTAGTGGCCAAGACAATGTTCTGCCTTTGTCCATACAAGGTCGACTGGTCAATTTACATCTGGACTTAAATCTCACAAGCTGAATTTTGTGTCACCTGTTATCTTAGTTATGAGGCTAAGCTGGATGCAGCTTTTTTTGAGGCCACAAGTGAAGGGAAAATAGGAATATGGATGTTTAGGATTTTTTGGAGAAATTTCAATTTGTCATTTAGTTTTGGGTATTTTCCATTGTACTTTTTCTTGATATTGTTTTATTTTCTTACAACTACGCAGGTCAAGTTCAAGCACACACAATGGGGAGAAGACCTGCTAGATGTTACCGACAGATTAAAAACAAACCGTACCCTAAGTCACGATTTTGCCGTGGTGTACCTGATCCTAAGATCAGAATCTATGACGTGGGAATGAAAAGGAAAGGAGTAGATGAATTTCCATTCTGTGTCCACCTCGTGAGTTGGGAGAAAGAAAATGTGTCAAGTGAAGCTTTAGAAGCAGCTAGGATTGCCTGCAATAAGTATATGACCAAGTTTGCTGGGAAGGATGCATTCCATTTGAGGGTCAGGGTGCACCCCTTCCATGTTCTGCGGATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACCGGCATGAGAGGTGCATTTGGGAAGCCACAGGGAACCTGTGCGAGAGTGGCCATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAACGGTCAAAACGCACAGGAGGCGCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTACCTGAAGTTCAAGGCAGAGAACAAGATTCTTCCAGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGGCCTCTAGCCAACCGTCAGCCTGGAAGAGCTTTTCTGTCTCAAGCTGCT

mRNA sequence

AGAAGGGTGAAAAACGAAGGAAGGCGGGATAATACGTGTTGTTCAAGTAGGAAAAAAAGGGCATTCGGCCCAATTTCTCCGTCCAAATCTGCTATAAAAAGGTTTAACAGCCACATTGAATCGCTGAATCTCGTCGCGCCGCCGCCACTTCTACAACTCATCTCTCTGTCGGTGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACCGGCATGAGAGGTGCATTTGGGAAGCCACAGGGAACCTGTGCGAGAGTGGCCATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAACGGTCAAAACGCACAGGAGGCGCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTACCTGAAGTTCAAGGCAGAGAACAAGATTCTTCCAGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGGCCTCTAGCCAACCGTCAGCCTGGAAGAGCTTTTCTGTCTCAAGCTGCT

Coding sequence (CDS)

AGAAGGGTGAAAAACGAAGGAAGGCGGGATAATACGTGTTGTTCAAGTAGGAAAAAAAGGGCATTCGGCCCAATTTCTCCGTCCAAATCTGCTATAAAAAGGTTTAACAGCCACATTGAATCGCTGAATCTCGTCGCGCCGCCGCCACTTCTACAACTCATCTCTCTGTCGGTGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACCGGCATGAGAGGTGCATTTGGGAAGCCACAGGGAACCTGTGCGAGAGTGGCCATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAACGGTCAAAACGCACAGGAGGCGCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTACCTGAAGTTCAAGGCAGAGAACAAGATTCTTCCAGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGGCCTCTAGCCAACCGTCAGCCTGGAAGAGCTTTTCTGTCTCAAGCTGCT

Protein sequence

RRVKNEGRRDNTCCSSRKKRAFGPISPSKSAIKRFNSHIESLNLVAPPPLLQLISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQAA
Homology
[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy Swiss-Prot
Match: P93847 (60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55
Identity = 104/124 (83.87%), Postives = 114/124 (91.94%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N  +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSR DYLK+K+EN+I+PDGVNAKLLG HGPLA RQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAF 215

Query: 173 LSQA 177
           LS +
Sbjct: 216 LSSS 219

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy Swiss-Prot
Match: Q9SPB3 (60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55
Identity = 100/122 (81.97%), Postives = 115/122 (94.26%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD N  +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFP RQKIIVSRKWGFTKF+R DY+K+K++N+ILPDGVNAKLLGCHGPLANRQPG+AF
Sbjct: 156 KFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAF 215

Query: 173 LS 175
           ++
Sbjct: 216 IN 217

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy Swiss-Prot
Match: Q9M5M7 (60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-55
Identity = 103/125 (82.40%), Postives = 113/125 (90.40%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKDNN  NAQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTK +RADY + K+EN+ILPDGVNAKLLGCHG LANR+PGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAF 215

Query: 173 LSQAA 178
           +   A
Sbjct: 216 IDAVA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy Swiss-Prot
Match: Q40592 (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-54
Identity = 102/121 (84.30%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N  +AQEALRRA
Sbjct: 25  VLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRA 84

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFP RQKIIVSRKWGFTKFSR DYLK+K+EN+I+PDGVNAKLLGCHG LA RQPGRAF
Sbjct: 85  KFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAF 144

Query: 173 L 174
           L
Sbjct: 145 L 145

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy Swiss-Prot
Match: Q08770 (60S ribosomal protein L10-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10B PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-53
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD +G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGVNAK L CHGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAF 215

Query: 173 LSQAA 178
           LS  A
Sbjct: 216 LSAGA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: XP_022942137.1 (60S ribosomal protein L10-like isoform X2 [Cucurbita moschata] >XP_022942138.1 60S ribosomal protein L10-like isoform X2 [Cucurbita moschata] >XP_023526268.1 60S ribosomal protein L10-like [Cucurbita pepo subsp. pepo] >XP_023526277.1 60S ribosomal protein L10-like [Cucurbita pepo subsp. pepo] >KAG6600485.1 60S ribosomal protein L10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (622), Expect = 7.15e-79
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQAA
Sbjct: 217 SQAA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: XP_022942135.1 (60S ribosomal protein L10-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 244 bits (622), Expect = 1.42e-78
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 118 LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 177

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 178 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 237

Query: 174 SQAA 177
           SQAA
Sbjct: 238 SQAA 241

[Close]
BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: XP_022982620.1 (60S ribosomal protein L10 [Cucurbita maxima] >XP_022982629.1 60S ribosomal protein L10 [Cucurbita maxima])

HSP 1 Score: 241 bits (616), Expect = 5.84e-78
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLK KAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKLKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQAA
Sbjct: 217 SQAA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: XP_008451785.1 (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo] >TYK16331.1 60S ribosomal protein L10-like [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (609), Expect = 6.77e-77
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQ A
Sbjct: 217 SQTA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: XP_004137249.1 (60S ribosomal protein L10 [Cucumis sativus] >KAE8649248.1 hypothetical protein Csa_015270 [Cucumis sativus])

HSP 1 Score: 238 bits (607), Expect = 1.36e-76
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQ A
Sbjct: 217 SQNA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy TrEMBL
Match: A0A6J1FU16 (60S ribosomal protein L10-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447292 PE=3 SV=1)

HSP 1 Score: 244 bits (622), Expect = 3.46e-79
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQAA
Sbjct: 217 SQAA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy TrEMBL
Match: A0A6J1FVN9 (60S ribosomal protein L10-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447292 PE=3 SV=1)

HSP 1 Score: 244 bits (622), Expect = 6.90e-79
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 118 LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 177

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 178 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 237

Query: 174 SQAA 177
           SQAA
Sbjct: 238 SQAA 241

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy TrEMBL
Match: A0A6J1J383 (60S ribosomal protein L10 OS=Cucurbita maxima OX=3661 GN=LOC111481440 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 2.83e-78
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLK KAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKLKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQAA
Sbjct: 217 SQAA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy TrEMBL
Match: A0A0A0KYV1 (Ribosomal_L16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G081250 PE=3 SV=1)

HSP 1 Score: 238 bits (607), Expect = 5.43e-78
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 22  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAK 81

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 82  FKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 141

Query: 174 SQAA 177
           SQ A
Sbjct: 142 SQNA 145

[Close]
BLAST of Cp4.1LG01g00780 vs. ExPASy TrEMBL
Match: A0A5D3CWP6 (60S ribosomal protein L10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001130 PE=3 SV=1)

HSP 1 Score: 239 bits (609), Expect = 3.28e-77
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0 

Query: 54  ISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAK 113
           + ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRAK
Sbjct: 97  LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAK 156

Query: 114 FKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 173
           FKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAFL
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 216

Query: 174 SQAA 177
           SQ A
Sbjct: 217 SQTA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. TAIR 10
Match: AT1G26910.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.3e-54
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD +G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGVNAK L CHGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAF 215

Query: 173 LSQAA 178
           LS  A
Sbjct: 216 LSAGA 220

[Close]
BLAST of Cp4.1LG01g00780 vs. TAIR 10
Match: AT1G14320.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-52
Identity = 96/121 (79.34%), Postives = 108/121 (89.26%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD +G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RAD+ K + E +++PDGVNAK L CHGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAF 215

Query: 173 L 174
           L
Sbjct: 216 L 216

[Close]
BLAST of Cp4.1LG01g00780 vs. TAIR 10
Match: AT1G66580.1 (senescence associated gene 24 )

HSP 1 Score: 201.8 bits (512), Expect = 4.5e-52
Identity = 97/122 (79.51%), Postives = 109/122 (89.34%), Query Frame = 0 

Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKDN+G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RA+Y K +A  +I+PDGVNAK L  HGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAF 215

Query: 173 LS 175
           +S
Sbjct: 216 IS 217

[Close]
BLAST of Cp4.1LG01g00780 vs. TAIR 10
Match: AT1G14320.2 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 145.2 bits (365), Expect = 5.0e-35
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 84  ARVAIGQ--VLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKF 143
           AR+A  +  VLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ K 
Sbjct: 68  ARIACNKYMVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKL 127

Query: 144 KAENKILPDGVNAKLLGCHGPLANRQPGRAFL 174
           + E +++PDGVNAK L CHGPLANRQPG AFL
Sbjct: 128 RQEKRVVPDGVNAKFLSCHGPLANRQPGSAFL 159

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P938471.5e-5583.8760S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1[more]
Q9SPB31.5e-5581.9760S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1[more]
Q9M5M72.5e-5582.4060S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1[more]
Q405922.7e-5484.3060S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 ... [more]
Q087708.8e-5380.0060S ribosomal protein L10-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10B PE=2 SV=2[more]
BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942137.17.15e-7995.9760S ribosomal protein L10-like isoform X2 [Cucurbita moschata] >XP_022942138.1 6... [more]
XP_022942135.11.42e-7895.9760S ribosomal protein L10-like isoform X1 [Cucurbita moschata][more]
XP_022982620.15.84e-7895.1660S ribosomal protein L10 [Cucurbita maxima] >XP_022982629.1 60S ribosomal prote... [more]
XP_008451785.16.77e-7793.55PREDICTED: 60S ribosomal protein L10-like [Cucumis melo] >TYK16331.1 60S ribosom... [more]
XP_004137249.11.36e-7693.5560S ribosomal protein L10 [Cucumis sativus] >KAE8649248.1 hypothetical protein C... [more]
BLAST of Cp4.1LG01g00780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FU163.46e-7995.9760S ribosomal protein L10-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1FVN96.90e-7995.9760S ribosomal protein L10-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1J3832.83e-7895.1660S ribosomal protein L10 OS=Cucurbita maxima OX=3661 GN=LOC111481440 PE=3 SV=1[more]
A0A0A0KYV15.43e-7893.55Ribosomal_L16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0812... [more]
A0A5D3CWP63.28e-7793.5560S ribosomal protein L10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of Cp4.1LG01g00780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G26910.16.3e-5480.00Ribosomal protein L16p/L10e family protein [more]
AT1G14320.11.5e-5279.34Ribosomal protein L16p/L10e family protein [more]
AT1G66580.14.5e-5279.51senescence associated gene 24 [more]
AT1G14320.25.0e-3575.00Ribosomal protein L16p/L10e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 44..135
e-value: 4.3E-42
score: 145.5
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 52..133
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 61..123
e-value: 2.0E-14
score: 53.8
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 68..123
e-value: 6.15607E-20
score: 78.3023
NoneNo IPR availableGENE3D3.30.60.300coord: 136..171
e-value: 3.3E-15
score: 57.2
NoneNo IPR availablePANTHERPTHR11726:SF4260S RIBOSOMAL PROTEIN L10-LIKEcoord: 53..175
IPR001197Ribosomal protein L10ePANTHERPTHR1172660S RIBOSOMAL PROTEIN L10coord: 53..175
IPR018255Ribosomal protein L10e, conserved sitePROSITEPS01257RIBOSOMAL_L10Ecoord: 65..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00780.1Cp4.1LG01g00780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome