Cp4.1LG01g00550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g00550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	Cp4.1LG01: 3561559 .. 3562275 (+)
RNA-Seq Expression	Cp4.1LG01g00550
Synteny	Cp4.1LG01g00550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAGTCTCCCCTTCTCAAATCCACCTTCCTCGGCCAAACTACCCGCCGCTTTCATCTCCACCGTCAATTCCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCTCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGATGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

mRNA sequence

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAGTCTCCCCTTCTCAAATCCACCTTCCTCGGCCAAACTACCCGCCGCTTTCATCTCCACCGTCAATTCCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCTCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGATGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

Coding sequence (CDS)

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAGTCTCCCCTTCTCAAATCCACCTTCCTCGGCCAAACTACCCGCCGCTTTCATCTCCACCGTCAATTCCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCTCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGATGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

Protein sequence

MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGGRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ

Homology

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BLAST of Cp4.1LG01g00550 vs. ExPASy Swiss-Prot
Match: Q9T0A4 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.9e-75
Identity = 147/241 (61.00%), Postives = 189/241 (78.42%), Query Frame = 0


Query: 3   SSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLGQT +   ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNV--VEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+   +ET  AE  E TE+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNE-TERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478 bits (1229), Expect = 5.39e-170
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

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BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 473 bits (1218), Expect = 2.57e-168
Identity = 234/238 (98.32%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRASPSHHTFRPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFI+ENPPPPPPKPSASKS+EIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

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BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: KAG6600515.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 473 bits (1216), Expect = 5.18e-168
Identity = 235/238 (98.74%), Postives = 237/238 (99.58%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRA PSHHTFRPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: KAG7031154.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469 bits (1208), Expect = 8.59e-167
Identity = 234/238 (98.32%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRA PSH TFRPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: XP_022943253.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita moschata])

HSP 1 Score: 468 bits (1203), Expect = 4.97e-166
Identity = 233/238 (97.90%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRA PSHHT RPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGL EELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLNEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Cp4.1LG01g00550 vs. ExPASy TrEMBL
Match: A0A6J1IWU0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481312 PE=4 SV=1)

HSP 1 Score: 473 bits (1218), Expect = 1.24e-168
Identity = 234/238 (98.32%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRASPSHHTFRPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFI+ENPPPPPPKPSASKS+EIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Cp4.1LG01g00550 vs. ExPASy TrEMBL
Match: A0A6J1FWM0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448039 PE=4 SV=1)

HSP 1 Score: 468 bits (1203), Expect = 2.41e-166
Identity = 233/238 (97.90%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRA PSHHT RPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGL EELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLNEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Cp4.1LG01g00550 vs. ExPASy TrEMBL
Match: A0A5D3CYY1 (NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003910 PE=4 SV=1)

HSP 1 Score: 388 bits (996), Expect = 9.12e-135
Identity = 199/242 (82.23%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS +HH FRPSA+FDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENPPPR--KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]

BLAST of Cp4.1LG01g00550 vs. ExPASy TrEMBL
Match: A0A1S3BSR5 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 388 bits (996), Expect = 9.12e-135
Identity = 199/242 (82.23%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS +HH FRPSA+FDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENPPPR--KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]

BLAST of Cp4.1LG01g00550 vs. ExPASy TrEMBL
Match: A0A6J1C3K2 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008167 PE=4 SV=1)

HSP 1 Score: 380 bits (975), Expect = 1.44e-131
Identity = 199/243 (81.89%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60
           MASSISLP+P    LKSTFLGQ  RRF  HR+FPLP+RAS SH  FRP+A FDL QLLGG
Sbjct: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVE--ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGG 120
           RGLCNGE+GL+EELKR+V E    IG EIPE  EK A   V EDGF+KELMGLTGGFPGG
Sbjct: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPP---KPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 180
           EKGLRKFISENPPPPP    KP AS S EIGAI SSQKPKPPDLPLLLPGMIAIVKNPN+
Sbjct: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 238
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQK
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240

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BLAST of Cp4.1LG01g00550 vs. TAIR 10
Match: AT4G23890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). )

HSP 1 Score: 283.1 bits (723), Expect = 2.1e-76
Identity = 147/241 (61.00%), Postives = 189/241 (78.42%), Query Frame = 0


Query: 3   SSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLGQT +   ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNV--VEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+   +ET  AE  E TE+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNE-TERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0A4	2.9e-75	61.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Cp4.1LG01g00550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553886.1	5.39e-170	100.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022982522.1	2.57e-168	98.32	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]
KAG6600515.1	5.18e-168	98.74	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argy...	[more]
KAG7031154.1	8.59e-167	98.32	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argy...	[more]
XP_022943253.1	4.97e-166	97.90	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita moschata]	[more]

BLAST of Cp4.1LG01g00550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWU0	1.24e-168	98.32	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FWM0	2.41e-166	97.90	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A5D3CYY1	9.12e-135	82.23	NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSR5	9.12e-135	82.23	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1C3K2	1.44e-131	81.89	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia O...	[more]

BLAST of Cp4.1LG01g00550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23890.1	2.1e-76	61.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.140		coord: 157..226 e-value: 9.8E-33 score: 113.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..238
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 162..213 e-value: 1.1E-28 score: 98.6
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 1..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00550.1	Cp4.1LG01g00550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)