Cp4.1LG00g04230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG00g04230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Auxin-responsive protein
Location	Cp4.1LG00: 15985459 .. 15985665 (-)
RNA-Seq Expression	Cp4.1LG00g04230
Synteny	Cp4.1LG00g04230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCGGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACAATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACA

mRNA sequence

ATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCGGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACAATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACA

Coding sequence (CDS)

ATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCGGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACAATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACA

Protein sequence

MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTKSAQENPPPT

Homology

[Close]

BLAST of Cp4.1LG00g04230 vs. NCBI nr
Match: XP_023521172.1 (auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135 bits (339), Expect = 8.42e-38
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60

Query: 61 SAQENPPPT 69
          SAQENPPPT
Sbjct: 61 SAQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. NCBI nr
Match: XP_023547310.1 (auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133 bits (334), Expect = 2.78e-37
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD+NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60

Query: 61 SAQENPPPT 69
          SAQENPPPT
Sbjct: 61 SAQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. NCBI nr
Match: KAG7030308.1 (Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (328), Expect = 3.76e-37
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD+NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPT 69
          S QENPPPT
Sbjct: 61 SDQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. NCBI nr
Match: KAG6599309.1 (Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 2.25e-36
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD+NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPT 69
          S QENPPPT
Sbjct: 61 SDQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. NCBI nr
Match: XP_022946836.1 (auxin-induced protein 22D-like [Cucurbita moschata])

HSP 1 Score: 129 bits (325), Expect = 6.05e-36
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAF+KDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD+NSDLTK
Sbjct: 1  MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPT 69
          S QENPPPT
Sbjct: 61 SDQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL
Match: A0A6J1G4Q6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1)

HSP 1 Score: 129 bits (325), Expect = 2.93e-36
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAF+KDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD+NSDLTK
Sbjct: 1  MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPT 69
          S QENPPPT
Sbjct: 61 SDQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL
Match: A0A6J1KCY1 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111493783 PE=3 SV=1)

HSP 1 Score: 128 bits (321), Expect = 1.15e-35
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSS INRIISNKRALPSDDQNP ESGRDNNSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSTINRIISNKRALPSDDQNPLESGRDNNSDLTK 60

Query: 61 SAQENPPPT 69
          SAQENPPPT
Sbjct: 61 SAQENPPPT 69

[Close]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL
Match: A0A6J1HSB8 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111465674 PE=3 SV=1)

HSP 1 Score: 103 bits (257), Expect = 5.15e-26
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPD+QSSPIN   SNKRALPSDDQN P+S R+NNSD TK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDNQSSPIN---SNKRALPSDDQNLPDSARENNSDPTK 60

Query: 61 SAQENPPPT 69
             +NPPPT
Sbjct: 61 CTPDNPPPT 66

[Close]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL
Match: A0A5A7V9G4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001460 PE=3 SV=1)

HSP 1 Score: 103 bits (256), Expect = 7.29e-26
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDNNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQNP ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61 KSAQENPPPT 69
          K  QEN PPT
Sbjct: 61 KCTQENTPPT 70

[Close]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL
Match: A0A1S3C3E2 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1)

HSP 1 Score: 103 bits (256), Expect = 7.29e-26
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDNNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQNP ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61 KSAQENPPPT 69
          K  QEN PPT
Sbjct: 61 KCTQENTPPT 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g04230 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g04230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521172.1	8.42e-38	100.00	auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo]	[more]
XP_023547310.1	2.78e-37	98.55	auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo]	[more]
KAG7030308.1	3.76e-37	97.10	Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6599309.1	2.25e-36	97.10	Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946836.1	6.05e-36	95.65	auxin-induced protein 22D-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4Q6	2.93e-36	95.65	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1	[more]
A0A6J1KCY1	1.15e-35	97.10	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111493783 PE=3 SV=1	[more]
A0A6J1HSB8	5.15e-26	81.16	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111465674 PE=3 SV=1	[more]
A0A5A7V9G4	7.29e-26	82.86	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C3E2	7.29e-26	82.86	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1	[more]

BLAST of Cp4.1LG00g04230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g04230.1	Cp4.1LG00g04230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus