Cp4.1LG00g00840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG00g00840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMitochondrial import inner membrane translocase subunit
LocationCp4.1LG00: 2017894 .. 2025795 (-)
RNA-Seq ExpressionCp4.1LG00g00840
SyntenyCp4.1LG00g00840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCCAAGAATTGAGCCCATTTTCGAAACCTAGTTTAGTGGCTCGGCTAGGTTGCGTGAAGGGCACCAAACGCGGCCCACAGCCGTCGCCTCCCTTGAAAGCAGAATCCGGTCTAGGGCTCTGGCAAATACAAAAGGGCTGTGGTTTATAGGGTTTAGCAAGCTCCGAACAAATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGGTTCAAGTTCTCTCTACTTGTTTCTTTTCTTCCAAATTTGTTGGTTGAGTTATCGATATGTATGTGTATCTGGACCTCTTAGAGTAGTCGGTTTAATGAATGCGTTTCGCTATTGCGTGTTATGTGACGGTTGAAATTAGAGAAATCAATTAGTAATTTCTGGTTTTGATGTTTGGATAGCGATGCGATCTGGCTTTTAACGATGAGATGTAGGAATTAATCGATGCCAGTTTTTAGGCTGTCGATTTTGTATTTTGGATTTTGGAGTGTTATATCGCAACATCAAACGGAATCGTTTCCGTTCTGTTTTCTCAGTTCTAGTTCGAACTTGTTTTTTATATTCTCATTTTTTTTTTCTAATTGAAGATGTAGAAATATTAAGTCCATGTGTTCTAGAATTTCTTTTTCGATGAGTCATTCTTGGTGAGTATTAGTTCACAAGAATCTTGTAGTTTTGTGCCTTAAACTTGTTTTCGATGAGTCATTCTAGCTGATTTCATGTTGAGGTTAACATAAACTGCTAGAAGGGGGCTCTCTCTCTTGTTGTGATTCAGAGTTTCTTCAAGATTAACACACGAGGAAGAGTTAATGAAGGTGGAAGTGGATGATTATAAATAATTTCTCGAGGTTTTGAGAAACAGTCGTGGTTGAACCTTTCTTGCCCTCATCGAAAACTAGAGATGACCACCAGACACGGACTATAGACAAATAGGCCATTTTGGGATTTGATGGGACAATCGTAGGTCATTTATCCGTAGGAAATGCTTACAAAACAACTGGAAACTTGAATGAACGTGGTTCCATATTATGGGGGTGGATGTAAAGGTTAGTTTGGTTATGCACATTGCACATTGATGTCATTATACACAAATCATGATCTTGAAAGGAAAAATAATTTTACTTAGTCCTGGAAAGCTAGTTTTCCATGAAAAGTCACTAAAGGAAAACAAGGGGGAAAAAACTTATTTTTTTTAATTATAAAAAGGGAACTATCCTACCTTACTTTTACTGAGCCCTCTCTTTCACCTCTGGATTCCCAAGATTTCTTCTAAAAATTTGAATTTCAGCTACTATTTAAGCCCAACTAGCATTGATCTACCATAGGATCTTTGGACTTCGGCATGCTAAAGATACTAGGGAAGGAAGGACATAAAGGTTCAATGTTCAGGCAATGATCCTTCCAAAACAGGGTTTTATTACCTTTGCTCTCCTTTGTCTTACACTACTTATTAAAAAAAATTGAATGCACTCCGAAATATGGAACTAAGAGCCCTTAAAATGATTGTGCTTTCAATTTCTCTTGCCACTTGTTTTTGGAAGCTATCATCTCTATAACGGACTGATTTGGAAAATAAATAAATAAATAAATGTAGACATTTAATCTTGTCGAAAATCACGCGATTTTCGGCGAGGTATTTATTCCCATTTAGGAGCGTACAAGTATCGTGGTTTTATTGTGTAAATATCTTGTGGACAAACGACGACGAAATTGCACGAAGTTGGCATTGGAAATCTTGTCGAAAACGAATGGGAAAGAAACGAGGGTTTTCGACTGCACTTTCGGACGGAGAAGATGAAGAGTTGGGTCAGTCATTCAAACCCTACCCGTTTCGATTTAGCCCACAAGTTCTAAGCCTAGGCGAACCAACAGCCCACGTCGTTTTAGCCTTCAACCCAGTGGCCCAACAGTCGCGACCCATACCCATCGTGCGTCTAAGTTGCAAGTTTGTTTACGTTGTCCAGCCCAAAGGAGGTCTAGTCCATTCAGTTTCGGCCCAACCTGACAGCCCGTGTTTTCCTTCAATGTCGCACGTGAACAACTCTCAACCATGACTCCTTTCAATGCATCCTCGGCTCGGCTTCAACGCATCCTTGGCTTGGCTTTATCGTTTTGCTCCACTCAGCTTTATCGTTTTGCTCTGCTTAGTTTCTCGGCTTAGACGGCTTGGTATACTATTATATATCGATTTCTAGGTTTTCGATCATTATGAATCCATTTTTGACCTTATCTAAGTCATTTGAGGTTAGTAATATTTTTGTTTACAAGTTTAATTAGCTTAGGAGCTTATATTGGAATTAATCATGATGTGCAGCTAAGTTAAGTTATTAGTAGGCCCTAAGTAGTAAGAGTTAGGTGTTAGATTATAGTTTTGAGACGACTACCAAATTGTTAGTGACTTCAGCCAAGGCCAACCAAGTAAGTGACCTTACTATTGGAGTTAGCCTATTGTTTGAGACGACTACCAAATTGTTAGTGACTTCAGCCAAGGCCAACCAAGTAAGTGACCTTACTATTGGAGTTAGCCTATTGTTTGATGTATGATGGTGCATGTACCATATTATATGTGTTATGCTTATGTTGTATGATGTTTATGTGATCTTTGTATTAATATGAGACGTATGTGACGTATGCATGTAAACCCATAACACTACTTCTATGAATGAATTGAAACGCTATGAAAGAAATGTTATGTTTTACATTTAAAGTTTTGTGACGGAACATGAGATGTTTGTCATGCATACTTGTATTATGTCATGAAAGAAAAGAGAAAGGAAATGAAATGTATGTTATGTCATGAATGTAAATCACAAGACCTCATGCATGTTTGTATGTCATATGCATCGGGATACTTCCCCATTATGTTATGTTAGTATGGATGCGTACCTTCGATATTTATGTATGCCATGATATCATGCGAACCTTTTCTTTTTTTGGCATCTGGTGGCATGTAATGCGTTGTGTTCGACCAAGTTGAGCCCAGGGGTACGTACAAGCCCGTCTGGTGGGCCCATGTGTGCATACGTGGGCCGTGTGTGGAAAAGTACCATACATCCAACCCTGCTCGAATTTCATGTTTTGAATTGATTAGGCAAGTCCATACCCTTATTTTAAAGATGTTTATTATGAATTTCTGCAATTATGATTTAAGATGTTTAGGTTAAGAAAATTAGGGAGTTACAATTTGGTATCAGAGCCCTAGGTTTTAGATTTGGTAGAGCATACTTCCAGGGTTCTCCAATTTGGTAGAGCATACTTCCAGGGTTCTCCAACAAAAAGTACTGTCACCGCTTGGTATGCTTTTAAAGGATAATTGTTTAGTTAAATGATGCATGCAATATGTTAGTTTTACTACGTTATGACATGTATAATATGATGGTTATGCTAATGTAAAGATTGTATGTATGTGTGACATGTATTTGTAGGATTGTTTATTGAAGCCTATTAGTTAAGTATGTGACTTAGTAGTTACGTGTTTTGTATAGAGTATGCCACCTAGAACACGAGGTGGAGAAATTTGGGGACGACCCCCACCTAGGGGTAGAAGAAGTGTTAGAAGAGGTCGAGGTTCGGAATGGGATAATTCTGTAAACTAGCCCGATGTAACTGTGCCACTCCCACCACCAGCGATGCCTCAAGCCGCACCAAACCCTACTGCTGCTCTAATAGAAGCATTGCAAGCTGTTGTGCAAATTATGATGACTACTCAACAGGCAAATGCTTCATCATCAACTAGACAAGCAAAGTGTTTGCGAGATTTCAAGAGGGTTGACCCTCAAACCTTTAATGGGTCTTCAGATGATCCAACTGTGGCACAATTATGGTTGAGATCTATAGAGACCGTGTTTGAGTTGATCAATTGCCCTGATGATCAGAAGGTGCGGTGTGCAACATTCATGTTGCGTGATGATGCAGACTTATGGTGGCAATCCACCAGCGAGATTATTAGTCCTGAGGGATGTGTAATCTCGTGGGCGGAATTCAAGGATGCCTTTATGGAAGAGTACTACTCTGAGGACATTCAACTTCGTATGCAACAAAAGTTCACTCAACTGTGTCAAAGGGGGCGTTCTGTTACCACATATGCTAGGGAGTTCATCAGAATGAAACATTTTGCCCCGGAGTTGGTGAACACTGACTACAGAACAACATGGTGGTTCGTACGTGGGTTGGACAAGAGGATCCGCCATATTGTTGAGGCGATATCACCTGCTACCTATGCTGTTGCCTTGAGAGCAGCTAGGGCCATGGAGGGAGTTGAAGAATCTCTTGAACCCCCTCCACCGATAGTGAAACGAAAGCGACGTCATGACCAAGTTGACCGTCATGATCCATTGCCATCAAAGCCACAACGACGACCTGACAGACAGTACCGTGATACCAGGCGTGGTCAACAAAGAAATGGAAGCCGACCAGATAATAGACCTCAGTGTAATGAATGTGGGAAAAATCATTGGGATCGATGTTTGGCCCATACCAGAGCTTGTTTTCAATGTGGAAAGGAGGGTCACATAGCTAAAGATTGCCAAGGAGGTTGCGCGAATGATTCTGGAAACCAACTAAGGAGACTAAGCATAGCGGATCGTCCTACTCAGAACTATCCTCCGACAAGAGCTTATGCCTCTATTGGCGAGGATATTGGGAATTCTGATGCAGTGGTGACAGGTACACTATCTGTTCTTGGTTACCTTGCTTTAACACTATTTGACTCGAGATCTACACATTCATTTATATCTGTTGTTTTCGTTAGTCAAGCAAAATTTGTATTAAAATGTAAAAATTTGTATCAAACATTTGTTGCATGAATTCTCTGTTAGCACCTCGACAGGGGTGGACTTGATTGCTGCTTATAGGGTAAAAGATAGTCATGTGTTAGTATCAGGAGTTAACCTAGAGGTAGATTTAATGGTAGTTCACATGATTGTATATGATGTTGTGGGAATGGATTGGTTAGTGGAAAATTATTCTAGCATAGACTTTTATAAGAAAGAAGTGATATTTACGACACCGTCCAAGACCAGTTTCAAATTCAAGGGTACGAGTTTAGGAATTATGCCTAAAGTGATATCAATGATGAAAGCGAAGAAGTTGGTTCAACACGAAGCGTGGGTTGTACTAGCTAGTGTCATGGATACCAAGAAGGAAGAAACTCCCTTAGCCACAGTGTCAGTTGCAAATAAATTTTCTGATGTGTTCCCAGAGGATTTGTCAGGAATTCCTCCGTCACGAGATGTTAATTTTGGAATAGAGTTGGAACCAAGTATGCTCTAAGGCCTTGTTTTGTATGGCACTAGTTGAATTGAAAGAATTCAAACACAACTACATGACTTGTTGGATAAAGGATTTATTAGACTCAGCGTTTCTCCTTGGGGTGCGTTGGTGTTATTTGTCAAGAAAAAAGATGGTTCGATGCCCTTGTGCATTGATTACAGGGAGCTGAACAAGAGAATGGTGAAGAACAAGTATCTTCTTCCACGCATTGAGGACTTATTCGATCAGCTCAGGGAAGCAACAATGTTCTAAAAAATTGACGTTCAGTTAGGTTACCACTAGATCAAGATAAAAAATGAGGACATATCGAAGACAACTTTCAAAACAAGCTATAGCCATTATGAGTTCGTGTTATGTCATTTGGACTCACTAATGCCCCTATAGTGTCCATGGAACTGATGAATTGAGTGTTTAAGAAATGTCTTGATATTTTTGTCATAGTATTTATAGACAATATCTTGGTATACTCGAAGACAGATCAAGAACATCATATGCACCTGAGAAAGACCCTGACAATTCTGAGTGAAAACAAACTGTATGTCAAGTTCTCGAAGTGTGAATTTTGGTTACGCGAAGTTTCATTTTTGGGGCATGTGGTATCTGAGAAGGGTGTGTCAAGGTGGAAGCCGTTACCAAATGGACTCGTCCAACTACTGTCATTGAGATACCTAGTTTCTTAGGATTAGCTGGTTACTACTGACGTTTCATTCAAGACTTTTGCCAAAATAGCCGCCCCTTCTCAGGATAAATCTGGCTAAAGTTAATTTGCCATCTCTAGACAGGAATAAACTCTTCCAAAGGTCCAATTTCCTACACGCTTACACTTTCTCAACAATTGGTTCACAGAAGGACTGCTTCCGATTCCCTCCTAAAGGCGAACCTAGTAGGAGAAAAGCTAGACGCCAGCCACATGCTCATTACTCAACCGTTGCAACCACCTCATGTTCGGAGATTTTTGAAAAAGCTAACATAGGACTCTTTGAAAGGAAGATGGAAGAATGGGATAACCTTTCAACACTAAACCAAAATCTTGATTCTGTAATCAAACTTCAGGGTTTTTCTCCACCGAGTCTGCTTTGGTAGCTCTGCAAGCGTCGGTAATGAGTGCCTTTTGTAACTATTCACTAGGTCACATTTTGCTAGATTGGAAGCCTTTGCTCTAGGCTGCACCCTTTTATAGGCTCTGTTTTTGTATTATCTTGTATTCTTTCATTTGTTTTCTCAATGCAAGTTGGTTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAGATGGAAGGGCTTCCAAATCGAGTGTTTGGATGCGTGCCTATCAGAAGGACGTTGGACCTATATTGACTTTGTATAACTGGTGTCTAACACGTCAATTGCACTAATAAATGTTCAATACGTGTTCAACAAGTGTCAAAGTGTTTTTCAGACATGGATACTCTAACGAACTGAAGTGTTCATGCTTGTTAGCCTAGAATGATAAATGGACAGATGGCCTCTGCAATATTCTTCACATTTTTACCATGTTCTTGAACCTTAAAGATTAATGTGAGGAAAGTTATGATTTGGGTATCTATATTTGTGATCCGAAGGTGTCACAACCAGGTATTAGACAAGCCACTGAAGGGGCTAATCGCCCTGCTGACTTCAGTACCCCATATGCCTCTTGGAGGAAGCCATTACAAAACTCATTGGGAACCTGCTGTATTTAGAGTGGAGAGGGGACTGCAAAAGTTGAATGAAATACACATTGGGGTTCTCGGTAGTTTGCACCTTGTGTGTTCTTTGTAATATCTTCTTGATAATAATTTTCTAGCTTAACAGTAATTAGCATGTAATCCTTTTTTTTAAGTCGGAGGTTCAAATTCCCATATTCACGAGCCAGTCTCTGGCTCTTTCTCTTGCTCTCTCTAAACTAGAATTAGATTTTCCCCCGTTTTCAATTAATTAAGAAACATACTTAGGTGTGTCTTGGGCTGTACCTATCTTTTTGCAGCCCACCTAGATGTCCGACTACGGTTTGTCACGTGACAAACTCTTCTTTCTTATTCTTTTTCGTACTATTTTTGAATTGTTTGCTGAAATATGATTTGAGTGAGCTGCAAAAAGATGGGTTGAGCTTAAGATAGACCCAAGTAATGCTCCTATATTTATTATCTTCCCTCAATTTGGGCAAATTTGAGTTGCTTACTCGCACTTTATCGCAGACCTTAAGAGTGAAGTGCTTTGCCAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGAAAAGAAAAGGTTTTGCTGAAACATTATGAGGTCCAGGTTTGATGTCCAGGTTTGATATTCCCCGTTCGATATTTGTTATTTAGTTTTTTAATCTTTCTCTCTCTACTAGATCACATGGGTTTATAGTCCGGATCCACTTGAACACTCTAATATCTTCTAAGACACGATCAACGTCGATGTCGATCATTATTATCGTTGAAATGTTTTTGTCATTCTCCT

mRNA sequence

CTTTTCCAAGAATTGAGCCCATTTTCGAAACCTAGTTTAGTGGCTCGGCTAGGTTGCGTGAAGGGCACCAAACGCGGCCCACAGCCGTCGCCTCCCTTGAAAGCAGAATCCGGTCTAGGGCTCTGGCAAATACAAAAGGGCTGTGCAAGCTCCGAACAAATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGCCAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGAAAAGAAAAGGTTTTGCTGAAACATTATGAGGTCCAGGTTTGATGTCCAGGTTTGATATTCCCCGTTCGATATTTGTTATTTAGTTTTTTAATCTTTCTCTCTCTACTAGATCACATGGGTTTATAGTCCGGATCCACTTGAACACTCTAATATCTTCTAAGACACGATCAACGTCGATGTCGATCATTATTATCGTTGAAATGTTTTTGTCATTCTCCT

Coding sequence (CDS)

CTTTTCCAAGAATTGAGCCCATTTTCGAAACCTAGTTTAGTGGCTCGGCTAGGTTGCGTGAAGGGCACCAAACGCGGCCCACAGCCGTCGCCTCCCTTGAAAGCAGAATCCGGTCTAGGGCTCTGGCAAATACAAAAGGGCTGTGCAAGCTCCGAACAAATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGCCAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGA

Protein sequence

LFQELSPFSKPSLVARLGCVKGTKRGPQPSPPLKAESGLGLWQIQKGCASSEQMDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALFKTPH
Homology
[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy Swiss-Prot
Match: Q9XH48 (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana OX=3702 GN=TIM13 PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-25
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 54  MDSFSS-PSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGS 113
           MDS+SS P  GS S  SP    + +KTQLAQAYAEE +ETLR KCF KC+TKPGSSL GS
Sbjct: 1   MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 114 ESSCISRCMERYIEATGIVSRALF 137
           ESSCISRC+ERY+EAT I+SR+LF
Sbjct: 61  ESSCISRCVERYMEATAIISRSLF 84

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy Swiss-Prot
Match: Q9XGY5 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM13 PE=3 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 8.0e-25
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSS SSGS    +     DQ+K QLAQAYA+EFLET+  KCFAKC+TKPGSSLSGSE
Sbjct: 1   MDSFSS-SSGSPP--NTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKT 139
           SSCISRC++RYIEATGIVSRALF +
Sbjct: 61  SSCISRCVDRYIEATGIVSRALFSS 82

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy Swiss-Prot
Match: Q8AVK1 (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis OX=8355 GN=timm13-b PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.0e-12
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 54  MDSFSSPSS---GSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLS 113
           MD F S  S    SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL 
Sbjct: 1   MDGFGSDFSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLD 60

Query: 114 GSESSCISRCMERYIEATGIVSRA 135
            SE  C++ CM+RY++A  IVSRA
Sbjct: 61  NSEQKCVAMCMDRYMDAWNIVSRA 84

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy Swiss-Prot
Match: Q6DGJ3 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=7955 GN=timm13 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.0e-12
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 54  MDSFSSP-SSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSG 113
           M+ F S  SSGSSS +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  
Sbjct: 1   MEGFGSDFSSGSSSGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDN 60

Query: 114 SESSCISRCMERYIEATGIVSRA 135
           SE  CI+ CM+RY++A   VSRA
Sbjct: 61  SEQKCIAMCMDRYMDAWNTVSRA 83

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy Swiss-Prot
Match: Q9Y5L4 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens OX=9606 GN=TIMM13 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0 

Query: 57  FSSPSSGS-SSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSESS 116
           F S   GS S +  P    +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  
Sbjct: 5   FGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQK 64

Query: 117 CISRCMERYIEATGIVSRA 135
           CI+ CM+RY++A   VSRA
Sbjct: 65  CIAMCMDRYMDAWNTVSRA 83

[Close]
BLAST of Cp4.1LG00g00840 vs. NCBI nr
Match: XP_023520535.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (432), Expect = 1.87e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEATGIVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. NCBI nr
Match: XP_022929052.1 (mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [Cucurbita moschata] >XP_022970119.1 mitochondrial import inner membrane translocase subunit TIM13 [Cucurbita maxima] >KAG6579600.1 Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (426), Expect = 1.54e-51
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEATGIVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. NCBI nr
Match: XP_038906948.1 (mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida])

HSP 1 Score: 163 bits (412), Expect = 2.09e-49
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. NCBI nr
Match: XP_004145880.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] >XP_008437464.1 PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo] >KGN49963.1 hypothetical protein Csa_000141 [Cucumis sativus])

HSP 1 Score: 161 bits (407), Expect = 1.21e-48
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. NCBI nr
Match: XP_022159838.1 (mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia])

HSP 1 Score: 157 bits (396), Expect = 5.71e-47
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEAT IVS+ALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSKALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy TrEMBL
Match: A0A6J1I4K9 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469108 PE=3 SV=1)

HSP 1 Score: 168 bits (426), Expect = 7.44e-52
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEATGIVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy TrEMBL
Match: A0A6J1ELP2 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435758 PE=3 SV=1)

HSP 1 Score: 168 bits (426), Expect = 7.44e-52
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEATGIVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy TrEMBL
Match: A0A0A0KK66 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 161 bits (407), Expect = 5.84e-49
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy TrEMBL
Match: A0A1S3AUN2 (Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 GN=LOC103482878 PE=3 SV=1)

HSP 1 Score: 161 bits (407), Expect = 5.84e-49
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. ExPASy TrEMBL
Match: A0A6J1DZZ6 (Mitochondrial import inner membrane translocase subunit OS=Momordica charantia OX=3673 GN=LOC111026139 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 2.77e-47
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 54  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 113
           MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 114 SSCISRCMERYIEATGIVSRALFKTPH 140
           SSCISRCMERYIEAT IVS+ALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSKALFKTPH 87

[Close]
BLAST of Cp4.1LG00g00840 vs. TAIR 10
Match: AT1G61570.1 (translocase of the inner mitochondrial membrane 13 )

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-26
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 54  MDSFSS-PSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGS 113
           MDS+SS P  GS S  SP    + +KTQLAQAYAEE +ETLR KCF KC+TKPGSSL GS
Sbjct: 1   MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 114 ESSCISRCMERYIEATGIVSRALF 137
           ESSCISRC+ERY+EAT I+SR+LF
Sbjct: 61  ESSCISRCVERYMEATAIISRSLF 84

[Close]
BLAST of Cp4.1LG00g00840 vs. TAIR 10
Match: AT5G50810.1 (translocase inner membrane subunit 8 )

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-05
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 77  LKTQLAQAYAEEFLETLRVKCFAKCITK-PGSSLSGSESSCISRCMERYIEATGIVSR 134
           L  +  +A   E +  +   C+ KCIT  PGS  S SESSC++ C +RY++ + I+ +
Sbjct: 15  LAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMK 72

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g00840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XH482.8e-2570.24Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha... [more]
Q9XGY58.0e-2574.12Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su... [more]
Q8AVK16.0e-1246.43Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi... [more]
Q6DGJ36.0e-1249.40Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=... [more]
Q9Y5L41.3e-1148.10Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens OX... [more]
BLAST of Cp4.1LG00g00840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520535.11.87e-52100.00mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo su... [more]
XP_022929052.11.54e-5198.85mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [C... [more]
XP_038906948.12.09e-4996.55mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida... [more]
XP_004145880.11.21e-4895.40mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] ... [more]
XP_022159838.15.71e-4791.95mitochondrial import inner membrane translocase subunit Tim13 [Momordica charant... [more]
BLAST of Cp4.1LG00g00840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I4K97.44e-5298.85Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3... [more]
A0A6J1ELP27.44e-5298.85Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX... [more]
A0A0A0KK665.84e-4995.40Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36... [more]
A0A1S3AUN25.84e-4995.40Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 ... [more]
A0A6J1DZZ62.77e-4791.95Mitochondrial import inner membrane translocase subunit OS=Momordica charantia O... [more]
BLAST of Cp4.1LG00g00840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G61570.12.0e-2670.24translocase of the inner mitochondrial membrane 13 [more]
AT5G50810.17.2e-0536.21translocase inner membrane subunit 8 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004217Tim10-likePFAMPF02953zf-Tim10_DDPcoord: 76..135
e-value: 4.0E-19
score: 68.0
IPR035427Tim10-like domain superfamilyGENE3D1.10.287.810Mitochondrial import inner membrane translocase subunit tim13 like domainscoord: 82..139
e-value: 6.7E-18
score: 66.0
IPR035427Tim10-like domain superfamilySUPERFAMILY144122Tim10-likecoord: 88..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..39
NoneNo IPR availablePANTHERPTHR19338:SF14OSJNBA0064M23.16 PROTEINcoord: 58..140
IPR039238Mitochondrial import inner membrane translocase subunit Tim8/13PANTHERPTHR19338TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOGcoord: 58..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g00840.1Cp4.1LG00g00840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045039 protein insertion into mitochondrial inner membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0042719 mitochondrial intermembrane space protein transporter complex
cellular_component GO:0005758 mitochondrial intermembrane space
molecular_function GO:0046872 metal ion binding