Cp4.1LG00g00780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG00g00780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG00: 1983439 .. 1984423 (-)
RNA-Seq Expression	Cp4.1LG00g00780
Synteny	Cp4.1LG00g00780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACACGCGAGACTCGAAGAATATAACAACAAATCCCTCCATCCCATTTTCAGCGCTCTGAGGTCAATATTCCGCGGCGTCTTCTAAATTTCATCTCCGATTCTCTTCCCCATTCCCCCCAAATCCGCCGAGATCCGGCGACTGTCGTCGGATTTCCTCACCGTCCGCTCCGACGAATCATGAAAGGCTCCTGCACGTTACTCGCTTCGGTCCTCGCCGCTTCGACCATGGCTTTCTCCTCCTCTTCGTCCTCCTCTAATGAAGATCGTGACCTCGCTCTTAATCCTCCCTCTCGAGAGGTAAAATCTTAATCGCTTTCGACTTCGAATGTTCCATTTTCAATTCTATTGTCCCGATCGGTTTTTGATCTGCTGTATTGTGTTTTTAGGGCTTCGTTTCGGAATCCGGTTCTAACAGAGGTTGCGGTTCGGATGCGTCAGCGGAGAAGGAGAAATTTGCGCCGAGGTTCGATGGATTGAGGTTCATTGAGACTTTGGTAACTGCTCATAGATAATCCAATCCCTAAGGAGCCTGTTCTCGTTCTTTCTTATGATCTTCTTTTTGTCATATTAATTTTTCGGATCGTGTCCTGTTTTACATGATTGTTAGGAACAGAAATTTTGTTCTTACATTGTGGAGTGATTTTACTGACTAAAAATCAAGAGATTTTGTGCGAGTTCCTCTTGTTTGTGACGGAGTCTCATTGTTGTAGAATTGCAATCCATTGTTGAACCGTCTGTCTGTGTGCGAATATTAAGAACAATTCTCAGAAGTATATGCATCCGTATAAGTTAGTTATTGAAATTAGCGGTTCGTCTTGGATTCTCCTTCGCTGTCAAAGCTTTAGATGAAGACAAAATTGGTAAAATGAAAGCAGAAGCATGAGGAATCATCAAATCCATTGATGCCTTTCGAACAACTCATTGTTGGTGTGTGTCTGTGTGATGATGACGATGAATTCTCGGGAGCTGATTGCAATAATATAT

mRNA sequence

TACACGCGAGACTCGAAGAATATAACAACAAATCCCTCCATCCCATTTTCAGCGCTCTGAGGTCAATATTCCGCGGCGTCTTCTAAATTTCATCTCCGATTCTCTTCCCCATTCCCCCCAAATCCGCCGAGATCCGGCGACTGTCGTCGGATTTCCTCACCGTCCGCTCCGACGAATCATGAAAGGCTCCTGCACGTTACTCGCTTCGGTCCTCGCCGCTTCGACCATGGCTTTCTCCTCCTCTTCGTCCTCCTCTAATGAAGATCGTGACCTCGCTCTTAATCCTCCCTCTCGAGAGGGCTTCGTTTCGGAATCCGGTTCTAACAGAGGTTGCGGTTCGGATGCGTCAGCGGAGAAGGAGAAATTTGCGCCGAGGTTCGATGGATTGAGGTTCATTGAGACTTTGGTAACTGCTCATAGATAATCCAATCCCTAAGGAGCCTGTTCTCGTTCTTTCTTATGATCTTCTTTTTGTCATATTAATTTTTCGGATCGTGTCCTGTTTTACATGATTGTTAGGAACAGAAATTTTGTTCTTACATTGTGGAGTGATTTTACTGACTAAAAATCAAGAGATTTTGTGCGAGTTCCTCTTGTTTGTGACGGAGTCTCATTGTTGTAGAATTGCAATCCATTGTTGAACCGTCTGTCTGTGTGCGAATATTAAGAACAATTCTCAGAAGTATATGCATCCGTATAAGTTAGTTATTGAAATTAGCGGTTCGTCTTGGATTCTCCTTCGCTGTCAAAGCTTTAGATGAAGACAAAATTGGTAAAATGAAAGCAGAAGCATGAGGAATCATCAAATCCATTGATGCCTTTCGAACAACTCATTGTTGGTGTGTGTCTGTGTGATGATGACGATGAATTCTCGGGAGCTGATTGCAATAATATAT

Coding sequence (CDS)

ATGAAAGGCTCCTGCACGTTACTCGCTTCGGTCCTCGCCGCTTCGACCATGGCTTTCTCCTCCTCTTCGTCCTCCTCTAATGAAGATCGTGACCTCGCTCTTAATCCTCCCTCTCGAGAGGGCTTCGTTTCGGAATCCGGTTCTAACAGAGGTTGCGGTTCGGATGCGTCAGCGGAGAAGGAGAAATTTGCGCCGAGGTTCGATGGATTGAGGTTCATTGAGACTTTGGTAACTGCTCATAGATAA

Protein sequence

MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEKEKFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Cp4.1LG00g00780 vs. NCBI nr
Match: XP_023520500.1 (uncharacterized protein LOC111783920 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152 bits (384), Expect = 3.04e-46
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Cp4.1LG00g00780 vs. NCBI nr
Match: XP_022929045.1 (uncharacterized protein LOC111435756 [Cucurbita moschata] >XP_022970121.1 uncharacterized protein LOC111469110 [Cucurbita maxima] >KAG7017053.1 hypothetical protein SDJN02_22165 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (381), Expect = 8.73e-46
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSD+SAEK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Cp4.1LG00g00780 vs. NCBI nr
Match: KAG7035524.1 (hypothetical protein SDJN02_02320 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (321), Expect = 1.25e-36
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKG+CTLLASVLAASTMAFSSSSSSS+ DRDLAL PPS EG VS+S +NRGCGSD+S+EK
Sbjct: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSLANRGCGSDSSSEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLKFIETLVTAHR 81

[Close]

BLAST of Cp4.1LG00g00780 vs. NCBI nr
Match: XP_008437456.1 (PREDICTED: uncharacterized protein LOC103482871 [Cucumis melo])

HSP 1 Score: 127 bits (320), Expect = 1.72e-36
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKGSCTLLASVLAASTMAFSSSSSS+  DRDL L PPS +GFV ESG+NRGCG+D+S+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTG-DRDLPLYPPSHQGFVPESGANRGCGADSSSEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Cp4.1LG00g00780 vs. NCBI nr
Match: KAA0042639.1 (uncharacterized protein E6C27_scaffold44G001370 [Cucumis melo var. makuwa] >TYK06040.1 uncharacterized protein E5676_scaffold376G001410 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 6.34e-34
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSRE----------GFVSESGSNR 60
          MKGSCTLLASVLAASTMAFSSSSSS+  DRDL L PPS +          GFVSESG+NR
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTG-DRDLPLYPPSHQALSPSPSLSIGFVSESGANR 60

Query: 61 GCGSDASAEKEKFAPRFDGLRFIETLVTAHR 81
          GCG+D+S+EKEKFAPRFDGLRFIETLVTAHR
Sbjct: 61 GCGADSSSEKEKFAPRFDGLRFIETLVTAHR 90

[Close]

BLAST of Cp4.1LG00g00780 vs. ExPASy TrEMBL
Match: A0A6J1HZR1 (uncharacterized protein LOC111469110 OS=Cucurbita maxima OX=3661 GN=LOC111469110 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 4.23e-46
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSD+SAEK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Cp4.1LG00g00780 vs. ExPASy TrEMBL
Match: A0A6J1ET49 (uncharacterized protein LOC111435756 OS=Cucurbita moschata OX=3662 GN=LOC111435756 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 4.23e-46
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSD+SAEK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Cp4.1LG00g00780 vs. ExPASy TrEMBL
Match: A0A1S3AU25 (uncharacterized protein LOC103482871 OS=Cucumis melo OX=3656 GN=LOC103482871 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 8.33e-37
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MKGSCTLLASVLAASTMAFSSSSSS+  DRDL L PPS +GFV ESG+NRGCG+D+S+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTG-DRDLPLYPPSHQGFVPESGANRGCGADSSSEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Cp4.1LG00g00780 vs. ExPASy TrEMBL
Match: A0A0A0KQK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146940 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 4.45e-35
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNE---DRDLALNPPSREGFVSESGSNRGCGSDAS 60
          MKGSCTLLASVLAASTMAFSSSSSSS+    DRDL L   S +GFVSESG+NRGCG+D+S
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSSSFTGDRDLPLYSLSHQGFVSESGANRGCGADSS 60

Query: 61 AEKEKFAPRFDGLRFIETLVTAHR 81
          +EKEKFAPRFDGLRFIETLVTAHR
Sbjct: 61 SEKEKFAPRFDGLRFIETLVTAHR 84

[Close]

BLAST of Cp4.1LG00g00780 vs. ExPASy TrEMBL
Match: A0A5A7TMP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001410 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 3.07e-34
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSRE----------GFVSESGSNR 60
          MKGSCTLLASVLAASTMAFSSSSSS+  DRDL L PPS +          GFVSESG+NR
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTG-DRDLPLYPPSHQALSPSPSLSIGFVSESGANR 60

Query: 61 GCGSDASAEKEKFAPRFDGLRFIETLVTAHR 81
          GCG+D+S+EKEKFAPRFDGLRFIETLVTAHR
Sbjct: 61 GCGADSSSEKEKFAPRFDGLRFIETLVTAHR 90

[Close]

BLAST of Cp4.1LG00g00780 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-06
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MKGSCTLLASV-LAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAE 60
          MK +  + AS+ +AAS  A S+ S++++       +  SR+    +    +G   D    
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGG-- 60

Query: 61 KEKFAPRFDGLRFIETLVTAHR 82
           EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 DEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Cp4.1LG00g00780 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 8.5e-06
Identity = 39/81 (48.15%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60
          MK S  ++ASV+A ST A SSSS          L P S +  V ES    G         
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSS---------ILPPVSPK--VWESRKTNG--------S 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 82
          + F PRFDGLRFIETLVTAHR
Sbjct: 61 DNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g00780 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g00780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520500.1	3.04e-46	100.00	uncharacterized protein LOC111783920 [Cucurbita pepo subsp. pepo]	[more]
XP_022929045.1	8.73e-46	98.77	uncharacterized protein LOC111435756 [Cucurbita moschata] >XP_022970121.1 unchar...	[more]
KAG7035524.1	1.25e-36	85.19	hypothetical protein SDJN02_02320 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008437456.1	1.72e-36	85.19	PREDICTED: uncharacterized protein LOC103482871 [Cucumis melo]	[more]
KAA0042639.1	6.34e-34	76.92	uncharacterized protein E6C27_scaffold44G001370 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of Cp4.1LG00g00780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZR1	4.23e-46	98.77	uncharacterized protein LOC111469110 OS=Cucurbita maxima OX=3661 GN=LOC111469110...	[more]
A0A6J1ET49	4.23e-46	98.77	uncharacterized protein LOC111435756 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A1S3AU25	8.33e-37	85.19	uncharacterized protein LOC103482871 OS=Cucumis melo OX=3656 GN=LOC103482871 PE=...	[more]
A0A0A0KQK5	4.45e-35	82.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146940 PE=4 SV=1	[more]
A0A5A7TMP9	3.07e-34	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG00g00780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	3.8e-06	42.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	8.5e-06	48.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..58
None	No IPR available	PANTHER	PTHR34683:SF3	BNAUNNG00100D PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g00780.1	Cp4.1LG00g00780.1	mRNA