Cp4.1LG00g00600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG00g00600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor WER-like
Location	Cp4.1LG00: 1866648 .. 1866938 (-)
RNA-Seq Expression	Cp4.1LG00g00600
Synteny	Cp4.1LG00g00600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGGGCTACCTTTTTCGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGAAGGGAAGAAATGGAAGAAAGTGGGGATATTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGAATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

mRNA sequence

ATGGCAAGCGGGCTACCTTTTTCGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGAAGGGAAGAAATGGAAGAAAGTGGGGATATTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGAATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

Coding sequence (CDS)

ATGGCAAGCGGGCTACCTTTTTCGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGAAGGGAAGAAATGGAAGAAAGTGGGGATATTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGAATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

Protein sequence

MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI

Homology

[Close]

BLAST of Cp4.1LG00g00600 vs. NCBI nr
Match: KAG7017035.1 (Transcription factor MYB4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (476), Expect = 1.10e-58
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSE 60
           MASGLPF SGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGD+FGGCEVFYEGSWNCSE
Sbjct: 82  MASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSE 141

Query: 61  NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 142 NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 177

[Close]

BLAST of Cp4.1LG00g00600 vs. NCBI nr
Match: XP_022969770.1 (transcription factor MYB8-like [Cucurbita maxima])

HSP 1 Score: 187 bits (476), Expect = 1.22e-57
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSE 60
           MASGLPF SGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGD+FGGCEVFYEGSWNCSE
Sbjct: 160 MASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSE 219

Query: 61  NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 220 NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 255

[Close]

BLAST of Cp4.1LG00g00600 vs. NCBI nr
Match: KAG6579576.1 (Transcription repressor MYB5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (476), Expect = 1.26e-57
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSE 60
           MASGLPF SGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGD+FGGCEVFYEGSWNCSE
Sbjct: 161 MASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSE 220

Query: 61  NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 221 NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 256

[Close]

BLAST of Cp4.1LG00g00600 vs. NCBI nr
Match: XP_022928836.1 (transcription factor WER-like [Cucurbita moschata])

HSP 1 Score: 187 bits (476), Expect = 1.26e-57
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSE 60
           MASGLPF SGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGD+FGGCEVFYEGSWNCSE
Sbjct: 161 MASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSE 220

Query: 61  NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 221 NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 256

[Close]

BLAST of Cp4.1LG00g00600 vs. NCBI nr
Match: XP_038874421.1 (transcription factor MYB8-like [Benincasa hispida])

HSP 1 Score: 144 bits (364), Expect = 1.26e-40
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MASGLPFSSGNQGG-----GGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFY-EG 60
           MAS LP SSGNQGG     GG TD+LAVNG  EI+K+KG EE+EESGD+FGGCE  Y E 
Sbjct: 161 MASRLPLSSGNQGGDNGGGGGGTDQLAVNGDEEIQKVKGMEELEESGDLFGGCEGMYKEL 220

Query: 61  SWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           SWNCSENGERI+E+EDDSYQQLL+L GEDYIQLESFIDYFLI
Sbjct: 221 SWNCSENGERIDEIEDDSYQQLLNLHGEDYIQLESFIDYFLI 262

[Close]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL
Match: A0A6J1I0W3 (transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111468870 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 5.91e-58
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSE 60
           MASGLPF SGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGD+FGGCEVFYEGSWNCSE
Sbjct: 160 MASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSE 219

Query: 61  NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 220 NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 255

[Close]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL
Match: A0A6J1ELE7 (transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111435631 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 6.09e-58
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDIFGGCEVFYEGSWNCSE 60
           MASGLPF SGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGD+FGGCEVFYEGSWNCSE
Sbjct: 161 MASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSE 220

Query: 61  NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
           NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 221 NGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 256

[Close]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL
Match: A0A5A7TGY6 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001650 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 1.62e-35
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MASGLPFSSGNQGG--------GGETDRLAVNGGGEI-EKLK-GREEMEESGDIFGGCEV 60
           + S L  SSGNQGG        GGETDRL VNG  EI EK+K GREE+EESGD FGGCE 
Sbjct: 157 IGSELLLSSGNQGGEDGGSRGGGGETDRLGVNGDEEIIEKVKAGREELEESGDFFGGCEG 216

Query: 61  FYEG-SWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
            Y+G SWN SENGER++E+EDDSYQQLL+L+GEDYIQLESFIDYFLI
Sbjct: 217 LYKGLSWNGSENGERVDEIEDDSYQQLLNLEGEDYIQLESFIDYFLI 263

[Close]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL
Match: A0A1S3AU00 (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103482846 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 7.23e-34
Identity = 74/107 (69.16%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MASGLPFSSGNQGG--------GGETDRLAVNGGGEI-EKLK-GREEMEESGDIFGGCEV 60
           + S L  SSGNQGG        GGETD+L VNG  EI EK+K GREE+EESGD F GCE 
Sbjct: 157 IGSELLLSSGNQGGEDGGSRGGGGETDQLGVNGDEEIIEKVKAGREELEESGDFFDGCEG 216

Query: 61  FYEG-SWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
            Y+G SWN SENGER++E+EDDSYQQLL+L+GEDYIQLESFIDYFLI
Sbjct: 217 LYKGLSWNGSENGERVDEIEDDSYQQLLNLEGEDYIQLESFIDYFLI 263

[Close]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL
Match: A0A6J1E0Q2 (transcription factor MYB8-like OS=Momordica charantia OX=3673 GN=LOC111024867 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 3.52e-33
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1   MASGLPFSSGNQGGGGETDRLAVNGGGEIE-KLKGREEMEESGDIFGGCEVFYEGSWNCS 60
           +AS LP SSGN GGGG        GG EIE   KG EE  ESGD+FGGCE+ Y GSWNCS
Sbjct: 167 VASALPLSSGNPGGGGG------GGGAEIELAAKGEEEKIESGDLFGGCEILYGGSWNCS 226

Query: 61  ENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 96
            NGE I+EVEDDSYQQL +LQGEDYIQL+SFIDYFLI
Sbjct: 227 ANGEMIDEVEDDSYQQLFNLQGEDYIQLDSFIDYFLI 257

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g00600 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g00600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017035.1	1.10e-58	97.92	Transcription factor MYB4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969770.1	1.22e-57	97.92	transcription factor MYB8-like [Cucurbita maxima]	[more]
KAG6579576.1	1.26e-57	97.92	Transcription repressor MYB5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022928836.1	1.26e-57	97.92	transcription factor WER-like [Cucurbita moschata]	[more]
XP_038874421.1	1.26e-40	76.47	transcription factor MYB8-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I0W3	5.91e-58	97.92	transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111468870 PE=4 ...	[more]
A0A6J1ELE7	6.09e-58	97.92	transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111435631 PE=4...	[more]
A0A5A7TGY6	1.62e-35	71.03	Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3AU00	7.23e-34	69.16	transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103482846 PE=4 SV=1	[more]
A0A6J1E0Q2	3.52e-33	70.10	transcription factor MYB8-like OS=Momordica charantia OX=3673 GN=LOC111024867 PE...	[more]

BLAST of Cp4.1LG00g00600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g00600.1	Cp4.1LG00g00600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding