Cp4.1LG00g00580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG00g00580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG00: 1859874 .. 1862454 (-)
RNA-Seq Expression	Cp4.1LG00g00580
Synteny	Cp4.1LG00g00580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACATTTTCCCACATTTCGTCCATATTCCATAAAAGCTCCGACCATCTTGCACCACCGCATACCTCCCACCGTCGCCATTTGCTTCAAATCGCCGTCGAAGATCTTCCTCCGCCACCTGCGCAGAGCGATCCTACAGAACATCACCAAGAAAGCTACCATCACCGAGCAATATGGCTGGAGTCAAGGGCATCAAGAGAATCCCTCGCATCAAATTCCCTAAACGACATCCCAACCCCTCTGGTTCGCTTCCGTCTTCCCTTTTTTCTCGTTACTTTTGTTTATTTTGATCCATGATCTTCCTCAAACAAGGAAATTCCTCTATACACATATGAAAATTGTCGTTCGTATTTGTATTCGATCGTCTCTGTTTTTCCTTTCGTTGATTTTTGACTTGACCTGTATTTATGGCTTTGATTCTGTTTTACTGTGGTTTGTGCCATCGTTTGATTGCTTGTTTGCTTTTATGAACTGCTGTAGAGACTAAAGATTTTTGTTCTCTTTTCAATTTAATGGTTTAATCTTATGAGTGTTGGCTTGTCTTTGAAATTTCTACATTTGATTAGCATTTTGTTAACCTAGATTTTGAAACCTAATGACACAGATTAGTAACCCAAGCCTCACAGAGTTAGAATGAAACTTGATTCAAAAGTGGGGAGGAAGAATTTTGTGAGAGTTTCAATTTGACCCATAATTTGTTTTCTTATTTGATGAGGTTTGTATGAGAGGGAAGTTGATTTCTATGCCTCTTGGAATGCTGAAATGTGTGAGATTATGAATCCTTCTATAAATTTATGTGCCTATTTCACTATCTTCTCTTTGAAAAGAATGAACAGAAGAAGGGCATGGCGATGTGTTAAAATTGTTTTATCTGTTGCTAATTTGATTTAACGGACACCAACCTGACATTGATGGATGATCATTAACGTTGAGTTGTACATGTCGTAATCTATCGATTGTCGAATTCTGTCTTCGTGGTGTGTTTTCTGAAGAAAGTTTTACAGGTTCTTCTTCGCAAACTCCATCAAGCAGTGGAGTGGATAGTCAAAATTTCATCACATCCTTGAGTGAAACTGCCTCCAAAACTGTTGATGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCATTGTCCAATGAGGAGATTGAAGCTATTTTGGTAATAGAATCTATTCCTATTTGGTGGCTGCTTGCTTGCTTTTATCATTGCTGATTGATCTATTGTTTCTTATAATGCAATGTGCTTCAAGCTTTCAATTTGGACTTATTGCAAGAAAATCACCATGAGATGCATACCTTAAACCTTAAAAAATATGATCTGGTCACGTTCTGTACTTTAGTATGTGTATCGTTGTCGAAGTAATGACTAGCGAGTCGAGTGCACAAATCATTTGTTTGTGATTAGGAGATTGTGTTTAGTTTGTTAGAGTTTGTTCCTTCATGGAACAAGGAGTTGATGCATTTTCGTCGAGTATTATTGTAAAGCCCGAGTAAAAGAGGGATACAAGAATGAGCTGAGACCACATTTGAATTTGAATGATCTTGATGATTGAGACAGATTTTAAAAGAATTGATGTGACTATCTATGCCTATCAAGGTATTGGGAGGGAGTCCCACATCGGATAATTAAGGGGATGATCATGGGGTTATAAGGAATACATCTTCATTGGTACGAGGTCTTTTGGGAAAACCAAAAGTAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCCTACCATTGTAGAGAGTCGTAGTTCCTAACACAAGGTGCACTTTCCTTTCCAGTGACTCAATTATAAAAACTTTACAGTCAAACATGCTTAGTTTGGAGCAATCCTATGTTGGATAGTCTCTTAAAAAAATTTCTATGAAGCATGTAAGTGAGGACAAGGCGTGCTAAAATGACTCGTAGTGGTCTGTAAGAATAATCTTCACTCTTAAAAGCAACAAGTAGGTAATTTCATGTTGTGGGAACACGGGGTGTTACGATTATGCATTTCACTTGGATGTAGCGATGTTAACTTCATGATGATGTACGTTTATCGGCACGCCTATATACTCCATCCATGACATCATTTCAAATTTTGATTACTAGAATGGCTTTGCTTCTACGAATCAGAATCCATTATTCCCTGTGTTTGCTTTTGCTGGGAGATTCTTACTCACAATTCTGTAACTCATTTGCAGCTGGGTGGCCGCGTCTGATGAGCCTCGAGAGTGAATAAAACTATGGTTGTGGTCAATTCCTTTCTCCTATTTCAAAAGTTACAGTTTCCAGTTTTGATTAATACTATGGTTCTGAGATTTCTACATGTAAATTGGTTTAAATCTTTAATAAGAGGAAGCTCTATACTTCTCGATCGTATGGAACAAATGTTCTCGAGCTTGAAACTTCAATTTTGAATTTGTAGAAAGTCTTCATTTGAGCTTGTCGAAGGTCCTCGAGTTCTAGCTTATTGAGGGTGTTCGTCGCGGCTTGTAGTTTCTTAAGGTCATGTTTGTTTCATACGAGTTGTGCTTTGTTTTTTTTACCGTATGAATAATTTGTATTAAATTATTTATAACAATTATAAAGTGATGA

mRNA sequence

TGGACATTTTCCCACATTTCGTCCATATTCCATAAAAGCTCCGACCATCTTGCACCACCGCATACCTCCCACCGTCGCCATTTGCTTCAAATCGCCGTCGAAGATCTTCCTCCGCCACCTGCGCAGAGCGATCCTACAGAACATCACCAAGAAAGCTACCATCACCGAGCAATATGGCTGGAGTCAAGGGCATCAAGAGAATCCCTCGCATCAAATTCCCTAAACGACATCCCAACCCCTCTGGTTCTTCTTCGCAAACTCCATCAAGCAGTGGAGTGGATAGTCAAAATTTCATCACATCCTTGAGTGAAACTGCCTCCAAAACTGTTGATGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCATTGTCCAATGAGGAGATTGAAGCTATTTTGCTGGGTGGCCGCGTCTGATGAGCCTCGAGAGTGAATAAAACTATGAAAGTCTTCATTTGAGCTTGTCGAAGGTCCTCGAGTTCTAGCTTATTGAGGGTGTTCGTCGCGGCTTGTAGTTTCTTAAGGTCATGTTTGTTTCATACGAGTTGTGCTTTGTTTTTTTTACCGTATGAATAATTTGTATTAAATTATTTATAACAATTATAAAGTGATGA

Coding sequence (CDS)

ATGGCTGGAGTCAAGGGCATCAAGAGAATCCCTCGCATCAAATTCCCTAAACGACATCCCAACCCCTCTGGTTCTTCTTCGCAAACTCCATCAAGCAGTGGAGTGGATAGTCAAAATTTCATCACATCCTTGAGTGAAACTGCCTCCAAAACTGTTGATGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCATTGTCCAATGAGGAGATTGAAGCTATTTTGCTGGGTGGCCGCGTCTGA

Protein sequence

MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQPKRTPLSNEEIEAILLGGRV

Homology

[Close]

BLAST of Cp4.1LG00g00580 vs. NCBI nr
Match: KAG6579573.1 (hypothetical protein SDJN03_24021, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (372), Expect = 1.84e-44
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFI+SLSETASKTVDGKASLQP
Sbjct: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGRV 79
          KRTPLSNEEIEAILLGG V
Sbjct: 61 KRTPLSNEEIEAILLGGCV 79

[Close]

BLAST of Cp4.1LG00g00580 vs. NCBI nr
Match: KAG7017033.1 (hypothetical protein SDJN02_22145 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (355), Expect = 1.20e-41
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFI+SLSETASKTVDGKASLQP
Sbjct: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60

Query: 61 KRTPLSNEEIEAIL 74
          KRTPLSNEEIEAIL
Sbjct: 61 KRTPLSNEEIEAIL 74

[Close]

BLAST of Cp4.1LG00g00580 vs. NCBI nr
Match: XP_038875405.1 (uncharacterized protein LOC120067868 [Benincasa hispida])

HSP 1 Score: 125 bits (315), Expect = 8.92e-36
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRHPNPSGS+S+TPSSSGVD Q F +SL +TASKTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSKTPSSSGVDDQIFFSSLEQTASKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTPLSNEEIEAILLGG
Sbjct: 61 KRTPLSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 hypothetical protein SDJN03_02911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118 bits (295), Expect = 1.00e-32
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M G + +KRIPRIKFPKRHPNPSGS+SQTP+S GVD Q    SL+E ASKT+ GKASLQP
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTP+SNEEIEAILLGG
Sbjct: 61 KRTPMSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. NCBI nr
Match: XP_022958002.1 (uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 uncharacterized protein LOC111491585 [Cucurbita maxima])

HSP 1 Score: 114 bits (286), Expect = 2.36e-31
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M   + +KRIPRIKFPKRHPNPSGS+SQTP+S GVD Q    SL+E ASKT+ GKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTP+SNEEIEAILLGG
Sbjct: 61 KRTPMSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. ExPASy TrEMBL
Match: A0A6J1K8D8 (uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.14e-31
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M   + +KRIPRIKFPKRHPNPSGS+SQTP+S GVD Q    SL+E ASKT+ GKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTP+SNEEIEAILLGG
Sbjct: 61 KRTPMSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. ExPASy TrEMBL
Match: A0A6J1H0Q6 (uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC111459363 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.14e-31
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M   + +KRIPRIKFPKRHPNPSGS+SQTP+S GVD Q    SL+E ASKT+ GKASLQP
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTP+SNEEIEAILLGG
Sbjct: 61 KRTPMSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. ExPASy TrEMBL
Match: A0A1S3AUJ6 (uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 7.74e-30
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRHP+ SGS+S+TPSS+G D   F +SL + ASKTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KR PLSNEEIEAILLGG
Sbjct: 61 KRIPLSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. ExPASy TrEMBL
Match: A0A0A0KMD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 6.36e-29
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRH + SGS+S+TPSS G D   F +SL + ASKTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTPLSNEEIEAILLGG
Sbjct: 61 KRTPLSNEEIEAILLGG 77

[Close]

BLAST of Cp4.1LG00g00580 vs. ExPASy TrEMBL
Match: A0A6J1DS43 (uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023342 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 4.94e-28
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRHPNPSGS+SQTPS+ GVD Q   ++ +    KTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSGSTSQTPSNLGVDDQVIFSTGN--VLKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGG 77
          KRTP+SNEEIEA+LLGG
Sbjct: 61 KRTPMSNEEIEAVLLGG 75

[Close]

BLAST of Cp4.1LG00g00580 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-14
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 4  VKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASKTVDGKASLQPKRT 63
          V G+KRIPRIKFP+RH NPS S  ++  ++  D+  F  S      KT  GKAS QPKRT
Sbjct: 4  VHGLKRIPRIKFPQRHINPSASEGKSQVANEADTLFF--SNLNNIQKTTGGKASSQPKRT 63

Query: 64 PLSNEEIEAILLGG 78
          P+SNEE+EAILLGG
Sbjct: 64 PVSNEEMEAILLGG 75

[Close]

BLAST of Cp4.1LG00g00580 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-11
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 7  IKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFITSLSETASK-TVD-GKASLQPKRTP 66
          ++RIPRIKFP+RH   SGS     S SGV      +S    A K T D GKASLQPKRTP
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTASSDVPAAPKNTADGGKASLQPKRTP 60

Query: 67 LSNEEIEAILLGG 78
          +S++EIE+I+LGG
Sbjct: 61 VSDKEIESIMLGG 73

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g00580 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g00580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579573.1	1.84e-44	97.47	hypothetical protein SDJN03_24021, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017033.1	1.20e-41	98.65	hypothetical protein SDJN02_22145 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038875405.1	8.92e-36	83.12	uncharacterized protein LOC120067868 [Benincasa hispida]	[more]
XP_023534508.1	1.00e-32	76.62	uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 ...	[more]
XP_022958002.1	2.36e-31	75.32	uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 unchar...	[more]

BLAST of Cp4.1LG00g00580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8D8	1.14e-31	75.32	uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585...	[more]
A0A6J1H0Q6	1.14e-31	75.32	uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC1114593...	[more]
A0A1S3AUJ6	7.74e-30	74.03	uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=...	[more]
A0A0A0KMD8	6.36e-29	74.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1	[more]
A0A6J1DS43	4.94e-28	71.43	uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Cp4.1LG00g00580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23885.1	1.7e-14	58.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G24165.1	6.5e-11	56.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..64
None	No IPR available	PANTHER	PTHR35751	FAMILY NOT NAMED	coord: 4..77
None	No IPR available	PANTHER	PTHR35751:SF3	OS06G0530200 PROTEIN	coord: 4..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g00580.1	Cp4.1LG00g00580.1	mRNA