CmoCh20G010130 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G010130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 6539511 .. 6540070 (-)
RNA-Seq ExpressionCmoCh20G010130
SyntenyCmoCh20G010130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATTAGTTTGACGCGTGTTTGCGACCGAAACGAACTTGTATTATCGTTTAGTGATGATGATCGCTTGTCAATCCAAAGCTTGATTTGCCAATACGCTATTTGTTTCTTCTTCTTTCACATCATCTATGAAAAATCTGAGCTTTTGGTCCAGTGGCCAGATATTCCACCATTGGACGAGAGGCGCAGAGCTCTGGTGCTGACAGGTTGTAGTCTGTGTTACACTATATAATTCAAAACGCCACTTTCCTTTCCTTTTCCCCCCAATTTTTTTCTTACACACTCCCTCCATCGCTGCACCAAACCTACACGTTTCTATCCCTAATTTATGTTCCTTTTTCCCCCTTTGATTTCTCAACAGTTCAAATTCTCCGGTTTATATATTCTTGTGATCGGAAATTTTCATCATGGCCGCAGCCGAAATTTGGAAGAAGCCGCTCCCATGTTGAATTGAAGGTGCCTGATTTGGCTGACTTTAGGGTTTCTTGCTTCGTGTTTTCTTTCGATTTTGGTTTCCCGCTGTATGAATTGGATCCCGATCCGAACCCCCATTGTTGA

mRNA sequence

ATGCACATTAGTTTGACGCGTGTTTGCGACCGAAACGAACTTGTATTATCGTTTAGTGATGATGATCGCTTGTCAATCCAAAGCTTGATTTGCCAATACGCTATTTGTTTCTTCTTCTTTCACATCATCTATGAAAAATCTGAGCTTTTGGTCCAGTGGCCAGATATTCCACCATTGGACGAGAGGCGCAGAGCTCTGGTGCTGACAGTTCAAATTCTCCGGTTTATATATTCTTGTGATCGGAAATTTTCATCATGGCCGCAGCCGAAATTTGGAAGAAGCCGCTCCCATGTTGAATTGAAGGTGCCTGATTTGGCTGACTTTAGGGTTTCTTGCTTCGTGTTTTCTTTCGATTTTGGTTTCCCGCTGTATGAATTGGATCCCGATCCGAACCCCCATTGTTGA

Coding sequence (CDS)

ATGCACATTAGTTTGACGCGTGTTTGCGACCGAAACGAACTTGTATTATCGTTTAGTGATGATGATCGCTTGTCAATCCAAAGCTTGATTTGCCAATACGCTATTTGTTTCTTCTTCTTTCACATCATCTATGAAAAATCTGAGCTTTTGGTCCAGTGGCCAGATATTCCACCATTGGACGAGAGGCGCAGAGCTCTGGTGCTGACAGTTCAAATTCTCCGGTTTATATATTCTTGTGATCGGAAATTTTCATCATGGCCGCAGCCGAAATTTGGAAGAAGCCGCTCCCATGTTGAATTGAAGGTGCCTGATTTGGCTGACTTTAGGGTTTCTTGCTTCGTGTTTTCTTTCGATTTTGGTTTCCCGCTGTATGAATTGGATCCCGATCCGAACCCCCATTGTTGA

Protein sequence

MHISLTRVCDRNELVLSFSDDDRLSIQSLICQYAICFFFFHIIYEKSELLVQWPDIPPLDERRRALVLTVQILRFIYSCDRKFSSWPQPKFGRSRSHVELKVPDLADFRVSCFVFSFDFGFPLYELDPDPNPHC
Homology
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BLAST of CmoCh20G010130 vs. NCBI nr
Match: KAG6571271.1 (Histone-lysine N-methyltransferase CLF, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-18
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 53 WPDIPPLDERRRALVLTVQILRFIYSCDRKFSSWPQPKFGRSRSH 98
          WPDIPPLDERRRALVLTVQILRFIYSCDRKFSSWPQPKFGRSRSH
Sbjct: 2  WPDIPPLDERRRALVLTVQILRFIYSCDRKFSSWPQPKFGRSRSH 46

The following BLAST results are available for this feature:
BLAST of CmoCh20G010130 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G010130 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G010130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571271.15.1e-18100.00Histone-lysine N-methyltransferase CLF, partial [Cucurbita argyrosperma subsp. s... [more]
BLAST of CmoCh20G010130 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G010130.1CmoCh20G010130.1mRNA