CmoCh20G009620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G009620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA polymerase sigma factor sigA-like
Location	Cmo_Chr20: 5246927 .. 5251188 (-)
RNA-Seq Expression	CmoCh20G009620
Synteny	CmoCh20G009620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCAACAACAACTGCAATAACTGGGCTTGGTGCAGCCAAGAGGCTGTTCAATTCTTCATCCTATTATTCCGATTTCACAGAAAAGGTTTTGTATGCCAATGACCACAGGATTGGACAAACCCAGGTTTCCCCTACAAAGAGTGTGGTAATAACAGCAAGAAGTTCGGCTAACTTTTCTCCGAGAAATCAGTCGTCGAATCGGCACGGGCATTGCATCAAAGCTGTGAAGGAACATGTAGATACACCCTCTTCTCCAACTGCTGAACCAAGGCTTCATAATAGCACGATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCTATGCTGGAGAAGCAATGGAATCTGTCTTTCGATCAAACCGTGTTGGCCGATGCGCTGAGAGGAAAAACACAGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGACAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGCAAACATGTTCTTATGGCTCAGCCAAGAATCAGCAAACAGTTGAGGCCTACAATCAATCCTGAGCTATTACAAAATCGATTAAAGGGGTATGTGAGAGGTTTATTAAGTGAAGAGTTGCTTTCTCATGCTGAAGTTGTACGCCTTTCGAAGAAAATCAAAGTCGGTCTCGCATTGGAGGAGCGTAAAACCAGGTCAGCACATTCTTATGTTCTTATTCAGATTTTCATAGTTACTCCAAAGCTTTGTACTATCCAAGCCCACAGCTAGCAGATATTGTCCTGTTTGAGTTTTCCGCTTTATAACTAGCAGATATTGTCCTCTTTATGTTTTCCGCTTTGTAACTACCCAAGCTCACAGCTACCAGATATTGTTTTCTTTGGGTTTTCCCTTTTGAGCTAGCCCTCAAGATTTTTAAAACGTGTCTGCTAAGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTCGTTTTCCTCTCCAACCGATGTGAAATCTCACAATCCAACCCCCCTTCGGGGCCCAGCATCCTCGCTGACACTCGTTCCCCTCTCCAATCAATGTGGGATCTCACAATCCAACCCCCTTCGGGGCCCAGCATCCTCGCTGACACTCGTTCCCCTCTCCAATCAATGTGGGATCTCACAATCCACCCCCCTTCAAGACCCAGCGTTCTCGCTAGCACTCGTTTCTCTCTCTAATCAATGTGAGATCTCACAAATCCACCCTCCTTCGGAGCCTAACGTCCTTGTTGGCATACCGCCTGGTGTCTAGTTCTGATACCATTTGTAACAACCAAAGCTCACCGCTAGTAGATATTGTCTGTTTTGACCCATTACGCATCGCCGTCAACCTCACCGTTTTAAAACGTGTCTACTAAGGAGAGGTTTCCACACCCTTATAAGGAATACTCCGTTCCCCTCTCGAACCAACGTGGGATCTCACAACATTTACGTATACAATTGAGTAATAGTAGTAGATAGTATTATTCCTACTTGGATGGCCTCAGGGTGGGATAAAACCATTCAACACTTACTCTTTTCCGGCCGTTTTCTTCTCATGATTAGTCTTATCCTAACCGAACTGATGTGAAAAAGAAACCCATCATATGCTTATATGCTACTGTTACTCCATTGTCAAAACTGATGCTCTAATAATGATATCATGAACTTCACATTTTGTTCTCCCTAACCTCTGTAATGAACCTCAGACTAAAGGAAAGATTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTCAAGATTTCTCGTGCCAAATTACGGTCAAGTGTAATGGAATGTTCATTAGCAAGAGAGAAGCTAGCAATGAGCAATGTTCGTTTGGTTATGTCTATTGCGCAAAGATACGACAAAATGGGGGCTGAAATGGATGACTTAGTTCAGGTGAAGAGCTTATGACAGCCCCTACAGAGCTAACTCTACACCTATTAGCTTCCCTGTAATTGAAGAGTTTGTTCATGTCTAATGTAGGGTGGCTTAATTGGACTTCTCCGTGGGATAGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGTGAGAAAACAACTACACTTCTGTATCATGAACACTTGGAGATCAAACATGTTGATTTGCCAAGAATAAAAGGAGAGATATTAAATCAGTTAATGTAAGCATCTAAATTGGAGAATGCATACCATGTTATAGCACGCACTGACAGCAGTTGAATGTCTTCATCCATGTGCAGGGTGTTTCAAAAGCATTAGTTGAGAATTCAAGAATGCTAAGATTACCGACTCATATGCATGAAAGATTAGGATTGATTCGCAACGCTAAAGTTAGACTGCAAGAGAAAGGAATCACTCCATCAATTGATGTAAGTGGATAACTAACTGTTATAACACTGCAGCAAAATATTGCTGAACACTGCTTACTGACATTAAAATATTGCTAAACGCTGCTTACTGACATTAAAGACCACAAACTTAGACTAAGATGTGAACTATATCAGCTCAAGTCCACCGCTAACATATATTGTTTTCTTTGGACTTTCCTTTTCGGGCTTCCCCTCAAAGTTTTTAAAACATGTCTGCTAGGGAGAGATTTTCACACCCTTATAAAGAATGTTTCATTCTCCTCCCCAACCAATGTGGGATCTCACAGTCCACCCCCTTCAAGACCCAGCGCATCCTCGCTGGCACTCGTTCCCCTCTCCAATTGGAGTGGGATCTCACAATTAACCCCCCTTCAGGCCCAACATCCTCGCTAGCACTCGTTCCTCTCTCCAATCACTGTGGGATCTAACAATCCACCCTCCTTCAGGACTCAGCGTCCTCACTGGCACACCGCTCGGTGTCCACCCCCCTTCGGGGCTCAGCATCCTCGCTAGTACACCATCCAGTGACTAGCTCTGATACCAACTATAACGACCCTAGATTTTTTTACTAACCTAAAGTCGCTACCATATACATAACATCACCGTTTATGCAGAAATAATCATTTGAAACGTATTCATAGAACATTGGACTACCATATACATAAAAAGTCTTGGAAACAAAACGGAAAAATGAAAATAGACATGAGTAAAAATAAAACAGAAATACCCATACTAACCAACATGAACTTTGTGGACTTTGGGATTTCCTTAACACTTGTCTATTTGTCCCAGAGGATTGCAGAATCCTTAAACATGTCCAAAAAGAAAGTCAAGAACGCCACAGAGGTACTACAAATTTCTAATAACCCATTTACTGTGCTTTATCCTAATGAATCTCTGTTTTCATTTTCCTTATTAAGCCAACCAATCATCTCTTTTAGGCAATAAGCAAGGTGTTCTCGCTAGACCGAGAGGCATTTCCTTCATTAAATGGTCTTCCAGGCGAAACTCATCATAGTGTAAGACTTGAATAGAAACTCTGTTTCTTCAAACATAACATGTTTTTCAGAACTTTGTTCTAAATTTTTGGCGTTGCTTGAATTCCTTTGTTTTTGCAGTATATTGCAGATAACTGCCTCGAGAACAACCCATGGCATGGAACAGACATATGGGTTCTGAAGGTAAAATAATCGACCACAAAACCAAGAAAATAGACTTAAAAGAGTGAAAAACTATACTATTTTCATCAATATAAGGTGACGAATGATGAGTTGTTTGCTTATACACTGAAAAATATTGGCAGGCTGAGGTTAACAATCTCATAACTACGACACTTGGGGACCGAGAAAGAGAGATCATACGCCTATACCACGGTCTGGATAACGAGTGTCTGACATGGGAGGAAATAAGCAAACGGTAAGCCAAAGAAACTTAATCGAGCAAATGACGATGATGTTCTAAGTTAGCTGACAAAATGCACTTTGTGGTATGAGTTTTTCAGCATAGGGTTGTCCAGAGAAAGAGTAAGACAAATTGGACTAGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGCTTAAACACTAATTTGTTAAGAACATATAATTACAATAGAGACCATCCATTGTCTATTGTGTATATATATAGAAAGAGATTTTGCTCTTGATTGATGTTGCCATCTACTAAATGTGAATAATTTTTTTGCGAAATTTGATTTTGAGGCATGTTGTCTTAGTGGTGTCATGATCCTGCACAATCTATTGTAAAAGTATCCTCCCAACTATTAGAAACACTTCAATCATCAAATTTTCTGAGCAGCGCACAATAAATCCACAAGGGAATACTTTGCTAC

mRNA sequence

ATGATGGCAACAACAACTGCAATAACTGGGCTTGGTGCAGCCAAGAGGCTGTTCAATTCTTCATCCTATTATTCCGATTTCACAGAAAAGGTTTTGTATGCCAATGACCACAGGATTGGACAAACCCAGGTTTCCCCTACAAAGAGTGTGGTAATAACAGCAAGAAGTTCGGCTAACTTTTCTCCGAGAAATCAGTCGTCGAATCGGCACGGGCATTGCATCAAAGCTGTGAAGGAACATGTAGATACACCCTCTTCTCCAACTGCTGAACCAAGGCTTCATAATAGCACGATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCTATGCTGGAGAAGCAATGGAATCTGTCTTTCGATCAAACCGTGTTGGCCGATGCGCTGAGAGGAAAAACACAGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGACAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGCAAACATGTTCTTATGGCTCAGCCAAGAATCAGCAAACAGTTGAGGCCTACAATCAATCCTGAGCTATTACAAAATCGATTAAAGGGGTATGTGAGAGGTTTATTAAGTGAAGAGTTGCTTTCTCATGCTGAAGTTGTACGCCTTTCGAAGAAAATCAAAGTCGGTCTCGCATTGGAGGAGCGTAAAACCAGACTAAAGGAAAGATTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTCAAGATTTCTCGTGCCAAATTACGGTCAAGTGTAATGGAATGTTCATTAGCAAGAGAGAAGCTAGCAATGAGCAATGTTCGTTTGGTTATGTCTATTGCGCAAAGATACGACAAAATGGGGGCTGAAATGGATGACTTAGTTCAGGGTGGCTTAATTGGACTTCTCCGTGGGATAGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGGTGTTTCAAAAGCATTAGTTGAGAATTCAAGAATGCTAAGATTACCGACTCATATGCATGAAAGATTAGGATTGATTCGCAACGCTAAAGTTAGACTGCAAGAGAAAGGAATCACTCCATCAATTGATAGGATTGCAGAATCCTTAAACATGTCCAAAAAGAAAGTCAAGAACGCCACAGAGGCAATAAGCAAGGTGTTCTCGCTAGACCGAGAGGCATTTCCTTCATTAAATGGTCTTCCAGGCGAAACTCATCATAGTTATATTGCAGATAACTGCCTCGAGAACAACCCATGGCATGGAACAGACATATGGGTTCTGAAGGCTGAGGTTAACAATCTCATAACTACGACACTTGGGGACCGAGAAAGAGAGATCATACGCCTATACCACGGTCTGGATAACGAGTGTCTGACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGAGTAAGACAAATTGGACTAGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGCTTAAACACTAATTTGTTAAGAACATATAATTACAATAGAGACCATCCATTGTCTATTGTGTATATATATAGAAAGAGATTTTGCTCTTGATTGATGTTGCCATCTACTAAATGTGAATAATTTTTTTGCGAAATTTGATTTTGAGGCATGTTGTCTTAGTGGTGTCATGATCCTGCACAATCTATTGTAAAAGTATCCTCCCAACTATTAGAAACACTTCAATCATCAAATTTTCTGAGCAGCGCACAATAAATCCACAAGGGAATACTTTGCTAC

Coding sequence (CDS)

ATGATGGCAACAACAACTGCAATAACTGGGCTTGGTGCAGCCAAGAGGCTGTTCAATTCTTCATCCTATTATTCCGATTTCACAGAAAAGGTTTTGTATGCCAATGACCACAGGATTGGACAAACCCAGGTTTCCCCTACAAAGAGTGTGGTAATAACAGCAAGAAGTTCGGCTAACTTTTCTCCGAGAAATCAGTCGTCGAATCGGCACGGGCATTGCATCAAAGCTGTGAAGGAACATGTAGATACACCCTCTTCTCCAACTGCTGAACCAAGGCTTCATAATAGCACGATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCTATGCTGGAGAAGCAATGGAATCTGTCTTTCGATCAAACCGTGTTGGCCGATGCGCTGAGAGGAAAAACACAGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGACAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGCAAACATGTTCTTATGGCTCAGCCAAGAATCAGCAAACAGTTGAGGCCTACAATCAATCCTGAGCTATTACAAAATCGATTAAAGGGGTATGTGAGAGGTTTATTAAGTGAAGAGTTGCTTTCTCATGCTGAAGTTGTACGCCTTTCGAAGAAAATCAAAGTCGGTCTCGCATTGGAGGAGCGTAAAACCAGACTAAAGGAAAGATTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTCAAGATTTCTCGTGCCAAATTACGGTCAAGTGTAATGGAATGTTCATTAGCAAGAGAGAAGCTAGCAATGAGCAATGTTCGTTTGGTTATGTCTATTGCGCAAAGATACGACAAAATGGGGGCTGAAATGGATGACTTAGTTCAGGGTGGCTTAATTGGACTTCTCCGTGGGATAGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGGTGTTTCAAAAGCATTAGTTGAGAATTCAAGAATGCTAAGATTACCGACTCATATGCATGAAAGATTAGGATTGATTCGCAACGCTAAAGTTAGACTGCAAGAGAAAGGAATCACTCCATCAATTGATAGGATTGCAGAATCCTTAAACATGTCCAAAAAGAAAGTCAAGAACGCCACAGAGGCAATAAGCAAGGTGTTCTCGCTAGACCGAGAGGCATTTCCTTCATTAAATGGTCTTCCAGGCGAAACTCATCATAGTTATATTGCAGATAACTGCCTCGAGAACAACCCATGGCATGGAACAGACATATGGGTTCTGAAGGCTGAGGTTAACAATCTCATAACTACGACACTTGGGGACCGAGAAAGAGAGATCATACGCCTATACCACGGTCTGGATAACGAGTGTCTGACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGAGTAAGACAAATTGGACTAGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGCTTAAACACTAA

Protein sequence

MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFSPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSMLEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISKQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQIGLVALEKLKKAAKTRKMEAMLLKH

Homology

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BLAST of CmoCh20G009620 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 2.1e-179
Identity = 347/517 (67.12%), Postives = 412/517 (79.69%), Query Frame = 0


Query: 5   TTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFSPRN 64
           T A+ GL   KRL +SS Y+SD TEK L  NDH   Q  ++ TKS  ITA+ ++N+SP  
Sbjct: 3   TAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKS-GITAKKASNYSPSF 62

Query: 65  QSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWE------DEETDLKCTVEALLLLQK 124
            SSNRH    KA+KE VD  S  T +P L N T  E      D++  +  +VEA+LLLQK
Sbjct: 63  PSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQK 122

Query: 125 SMLEKQWNLSFDQTVLADALRGK---TQKKVPV-TCSGVSARQRRMSSKRKIQSKHV-LM 184
           SMLEK WNLSF++ V ++   GK    +KK+PV TCSG+SARQRR+ +K+K    HV  +
Sbjct: 123 SMLEKSWNLSFEKAVSSE-YPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 182

Query: 185 AQPRISKQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRL 244
           +     KQ+R             GYV+G++SE++LSH EVVRLSKKIK GL L++ K+RL
Sbjct: 183 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 242

Query: 245 KERLGCEPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEM 304
           K+RLGCEPS++QLA+SLKISRA+L++ +MEC LAREKLAMSNVRLVMSIAQRYD +GAEM
Sbjct: 243 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 302

Query: 305 DDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLG 364
            DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVS+ALV+NSR LRLPTH+HERLG
Sbjct: 303 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 362

Query: 365 LIRNAKVRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 424
           LIRNAK+RLQEKGITPSIDRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 363 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 422

Query: 425 HHSYIADNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEIS 484
           HHSYIAD  LENNPWHG D   LK EV+ LI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 423 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 482

Query: 485 KRIGLSRERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           KRIGLSRERVRQ+GLVALEKLK AA+ RKMEAM+LK+
Sbjct: 483 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of CmoCh20G009620 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 449.1 bits (1154), Expect = 6.5e-125
Identity = 260/531 (48.96%), Postives = 347/531 (65.35%), Query Frame = 0


Query: 2   MATTTAITGLGAAKRLFNSSSYYSD-FTEKVLY-------------ANDHRIGQTQVSPT 61
           M  T A+ GL A  RL ++S   +D   +KV                 D          T
Sbjct: 1   MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPAT 60

Query: 62  KSVVITARSSANFSPRNQSS-----NRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDE 121
             +   A      SP  ++        H     A+      P  PT  P    +      
Sbjct: 61  PKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAA-----H 120

Query: 122 ETDLKCTVEALLLLQKSMLEKQWNLSFDQ------TVLADALRGKTQKKVPVTCSGVSAR 181
             DL+ ++EA++LLQ+SMLEKQW L FD         LA+     ++  V V  S VSAR
Sbjct: 121 AHDLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSAR 180

Query: 182 QRRMSSKRKIQSKHVLMAQPRISKQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRL 241
           QRRMS +R+ ++K         +      ++PEL+Q+R + Y+RG +S+ELL+H +VV L
Sbjct: 181 QRRMSGRRRGRTK---------NGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHL 240

Query: 242 SKKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNV 301
           S KIK G+ L++++++LKE+LG EPS  QLA SLKIS  +LRS + E  LARE L MSN+
Sbjct: 241 SHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNL 300

Query: 302 RLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALV 361
           RLV+SIAQ+YD +G E+ DL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVS+AL 
Sbjct: 301 RLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALA 360

Query: 362 ENSRMLRLPTHMHERLGLIRNAKVRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVF 421
           ENS+  RLPT++HERL  IR AK  L+++GI P+I+ IA SLN+S+KKV NATEA++KV 
Sbjct: 361 ENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVL 420

Query: 422 SLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREII 481
           SLD++AFPSLNGLPGET HSYI D  + N+PWHG + W LK EVN L+ +TL +RER+II
Sbjct: 421 SLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDII 480

Query: 482 RLYHGLDNECLTWEEISKRIGLSRERVRQIGLVALEKLKKAAKTRKMEAML 508
           RLYHG+  +C TWE+IS++ GLSRERVRQ+GL+A+EKLK AA+ + +EA+L
Sbjct: 481 RLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517

[Close]

BLAST of CmoCh20G009620 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-39
Identity = 115/309 (37.22%), Postives = 171/309 (55.34%), Query Frame = 0


Query: 204 SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAKLRSSVME 263
           S +LL+  E   LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR  +  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 264 CSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYV 323
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 324 YWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVRL-QEKGITPSIDRIAESLNMSK 383
           +WWI+Q V K+L + SRM+RLP HM E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 384 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDIWVLKAEVNN 443
           K++     +     SLD++   + N  P E     IAD           DI + +    +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IAD----PEAVTSEDILIKEFMRQD 508

Query: 444 L--ITTTLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQIGLVALEKLKKAAK 503
           L  +  +LG RE+++IR   G+ D    T +EI + +G+SRERVRQI   A  KLK   +
Sbjct: 509 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 568

Query: 504 TRKMEAMLL 509
              ++  L+
Sbjct: 569 NNHLQQYLV 569

[Close]

BLAST of CmoCh20G009620 vs. ExPASy Swiss-Prot
Match: Q03065 (RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigB PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-38
Identity = 97/293 (33.11%), Postives = 172/293 (58.70%), Query Frame = 0


Query: 207 LLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAKLRSSVMECSL 266
           LLSH + +  +++++  + +   K  L E+L  EP+  + A  +++    L   + +  +
Sbjct: 37  LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96

Query: 267 AREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 326
           A++K+  +N+RLV+SIA++Y K   E  DL+Q G +GL RG+EKFD + G+K STY YWW
Sbjct: 97  AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156

Query: 327 IRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVRLQEK-GITPSIDRIAESLNMSKKKV 386
           IRQG+++A+ + SR +RLP HM ++L  I+  +  L +K G    +  IA++LN+   ++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216

Query: 387 KNATEAISKVFSLDREAFPSLNGLPGETH-HSYIADNCLENNPWHGTDIWVLKAEVNNLI 446
           +   + + +  SLD        G   +T     + D+ +  +P    +  +L  +++NL+
Sbjct: 217 REYLQLVRQPVSLDMRI-----GFEQDTQLQDLLKDDGM--SPERYAERELLYQDIHNLL 276

Query: 447 TTTLGDREREIIRLYHGLDNEC-LTWEEISKRIGLSRERVRQIGLVALEKLKK 497
              L  +++E++ L  GL   C LT  +IS+R+G+SRERVRQ+   AL  L++
Sbjct: 277 -AKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRR 321

[Close]

BLAST of CmoCh20G009620 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 3.0e-37
Identity = 105/313 (33.55%), Postives = 173/313 (55.27%), Query Frame = 0


Query: 192 QNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEDQLAISLK 251
           ++ ++ Y++ +    LL   E + L+++I   LALE  +  L E+L   PS+ + A ++ 
Sbjct: 88  EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147

Query: 252 ISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKF 311
               + R  +     A++K+  SN+RLV+SIA++Y   G    DL+Q G +GL+R  EKF
Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 207

Query: 312 DSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLI-RNAKVRLQEKGITPS 371
           D  KG+K STY  WWIRQ +++A+ + SR +RLP H++E +  I +  K+  QE G  P+
Sbjct: 208 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 267

Query: 372 IDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL---PGETHHSYIADNCL 431
            + IA  + M+ +K+    K+A   IS    + +E    L       GET    +A N  
Sbjct: 268 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKN-- 327

Query: 432 ENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDN-ECLTWEEISKRIGLSRER 491
                      +L+ ++  ++ +TL  RER+++RL +GLD+    T EEI +   ++RER
Sbjct: 328 -----------LLREDLEGVL-STLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRER 386

Query: 492 VRQIGLVALEKLK 496
           +RQI   AL KL+
Sbjct: 388 IRQIEAKALRKLR 386

[Close]

BLAST of CmoCh20G009620 vs. ExPASy TrEMBL
Match: A0A6J1FYA0 (RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111448440 PE=3 SV=1)

HSP 1 Score: 983.4 bits (2541), Expect = 3.6e-283
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 0


Query: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60
           MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF
Sbjct: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60

Query: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120
           SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM
Sbjct: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120

Query: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180
           LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK
Sbjct: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180

Query: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240
           QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE
Sbjct: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300
           PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG
Sbjct: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360

Query: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQIGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 510

[Close]

BLAST of CmoCh20G009620 vs. ExPASy TrEMBL
Match: A0A6J1J7Q5 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111484226 PE=3 SV=1)

HSP 1 Score: 937.9 bits (2423), Expect = 1.7e-269
Identity = 491/510 (96.27%), Postives = 495/510 (97.06%), Query Frame = 0


Query: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60
           MMATTTAITGLGAAKRL NSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSS NF
Sbjct: 1   MMATTTAITGLGAAKRLLNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSPNF 60

Query: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120
           SPRNQSSNRH HCIKA       PSSPTAEP LHNSTIWEDEETDLKCTVE LLLLQKSM
Sbjct: 61  SPRNQSSNRHVHCIKA------APSSPTAEPGLHNSTIWEDEETDLKCTVEVLLLLQKSM 120

Query: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180
           LEKQWNLSFDQTVLADA RGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK
Sbjct: 121 LEKQWNLSFDQTVLADAPRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180

Query: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240
           QLRPTIN ELLQNRLKGYV+GLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE
Sbjct: 181 QLRPTINSELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300
           PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG
Sbjct: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS+ALVENSRMLRLPTHMHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRMLRLPTHMHERLGLIRNAKV 360

Query: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDIW+LKAEVN LITTTLG+REREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDIWILKAEVNKLITTTLGNREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQIGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 504

[Close]

BLAST of CmoCh20G009620 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 882.9 bits (2280), Expect = 6.5e-253
Identity = 461/510 (90.39%), Postives = 480/510 (94.12%), Query Frame = 0


Query: 2   MATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFS 61
           M  TTAI GLGAAKRL NSSSYYSDFTEK+LYAND+R+GQTQVSPTKSVVI A+SSANFS
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVI-AKSSANFS 60

Query: 62  PRNQSSNRHG-HCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 121
           P    SNRH   CIKAVKEHV+TPSSPTAEP L N+TIWEDEETDLKCTVEALLLLQKSM
Sbjct: 61  PSYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSM 120

Query: 122 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 181
           LEKQWNLSF+QTV  D  R KT KKVPVTCSGVSARQRRMSSKRKIQSKHV MAQP+ISK
Sbjct: 121 LEKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK 180

Query: 182 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 241
           QLRPTI+PELLQNRLKGYV+GLLSEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCE
Sbjct: 181 QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCE 240

Query: 242 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 301
           PSEDQLAISLKISRA+LRS +MECSLAREKLAMSNVRLVMSIAQRYD MGAEM DLVQGG
Sbjct: 241 PSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 300

Query: 302 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 361
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS+ALVENSR LRLPTH+HERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV 360

Query: 362 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 421
           +LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 KLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 422 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 481
           NCLENNPWHGTD W+LKAEVN LI  TLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 482 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQ+GLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 ERVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of CmoCh20G009620 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 882.9 bits (2280), Expect = 6.5e-253
Identity = 461/510 (90.39%), Postives = 480/510 (94.12%), Query Frame = 0


Query: 2   MATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFS 61
           M  TTAI GLGAAKRL NSSSYYSDFTEK+LYAND+R+GQTQVSPTKSVVI A+SSANFS
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVI-AKSSANFS 60

Query: 62  PRNQSSNRHG-HCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 121
           P    SNRH   CIKAVKEHV+TPSSPTAEP L N+TIWEDEETDLKCTVEALLLLQKSM
Sbjct: 61  PSYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSM 120

Query: 122 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 181
           LEKQWNLSF+QTV  D  R KT KKVPVTCSGVSARQRRMSSKRKIQSKHV MAQP+ISK
Sbjct: 121 LEKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK 180

Query: 182 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 241
           QLRPTI+PELLQNRLKGYV+GLLSEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCE
Sbjct: 181 QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCE 240

Query: 242 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 301
           PSEDQLAISLKISRA+LRS +MECSLAREKLAMSNVRLVMSIAQRYD MGAEM DLVQGG
Sbjct: 241 PSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 300

Query: 302 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 361
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS+ALVENSR LRLPTH+HERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV 360

Query: 362 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 421
           +LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 KLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 422 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 481
           NCLENNPWHGTD W+LKAEVN LI  TLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 482 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQ+GLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 ERVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of CmoCh20G009620 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 869.0 bits (2244), Expect = 9.8e-249
Identity = 453/509 (89.00%), Postives = 474/509 (93.12%), Query Frame = 0


Query: 2   MATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFS 61
           M  T AI GLGAAKRL NSSSYYSDF EK+LYANDHR+GQ+QVSPTKSVVI A+SSANFS
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVI-AKSSANFS 60

Query: 62  PRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSML 121
           P   SSNRH  CIKAVKEHVDTPSSPT EP L NST WEDEE DLKCTVEALLLLQKSML
Sbjct: 61  PSFPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSML 120

Query: 122 EKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISKQ 181
           EKQWNLSF+QTV  DA RG+TQKKVPVTCSGVSARQRRMSSKRKIQSK+  M QP+ISKQ
Sbjct: 121 EKQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQ 180

Query: 182 LRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 241
           LR TI+PELLQ RLKGYV+GL+SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP
Sbjct: 181 LRSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 242 SEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGL 301
           SEDQLAISLKISR +LRS V+ECSLA+EKLAMSNVRLVMSIAQRYD MGAEM DLVQGGL
Sbjct: 241 SEDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 302 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVR 361
           IGLLRGIEKFDSSKGF+ISTYVYWWIRQGVS+ALVENSR LRLPTH+HERLGLIRNAKVR
Sbjct: 301 IGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360

Query: 362 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 421
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 422 CLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 481
            LEN+PWHGTD W+LKAEVN LI  TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 XLENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 482 RVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           RVRQ+GLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of CmoCh20G009620 vs. NCBI nr
Match: XP_022943800.1 (RNA polymerase sigma factor sigA-like [Cucurbita moschata])

HSP 1 Score: 983.4 bits (2541), Expect = 7.3e-283
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 0


Query: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60
           MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF
Sbjct: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60

Query: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120
           SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM
Sbjct: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120

Query: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180
           LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK
Sbjct: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180

Query: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240
           QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE
Sbjct: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300
           PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG
Sbjct: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360

Query: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQIGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 510

[Close]

BLAST of CmoCh20G009620 vs. NCBI nr
Match: KAG6571215.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 971.5 bits (2510), Expect = 2.9e-279
Identity = 503/510 (98.63%), Postives = 506/510 (99.22%), Query Frame = 0


Query: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60
           MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF
Sbjct: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60

Query: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120
           SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM
Sbjct: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120

Query: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180
           LEKQWNLSFDQT+LAD  RGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK
Sbjct: 121 LEKQWNLSFDQTMLADTPRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180

Query: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240
           QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE
Sbjct: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300
           PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG
Sbjct: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360

Query: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDIW+LKAEVN LITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDIWILKAEVNKLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQIGLVA EKLKKAAKTR+MEAMLLKH
Sbjct: 481 ERVRQIGLVAWEKLKKAAKTRQMEAMLLKH 510

[Close]

BLAST of CmoCh20G009620 vs. NCBI nr
Match: KAG7011018.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 969.9 bits (2506), Expect = 8.4e-279
Identity = 502/509 (98.62%), Postives = 505/509 (99.21%), Query Frame = 0


Query: 2   MATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFS 61
           MATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFS
Sbjct: 1   MATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFS 60

Query: 62  PRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSML 121
           PRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  PRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSML 120

Query: 122 EKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISKQ 181
           EKQWNLSFDQT+LAD  RGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISKQ
Sbjct: 121 EKQWNLSFDQTMLADTPRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISKQ 180

Query: 182 LRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 241
           LRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP
Sbjct: 181 LRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 242 SEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGL 301
           SEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGL
Sbjct: 241 SEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGL 300

Query: 302 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVR 361
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVR
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVR 360

Query: 362 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 421
           LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 422 CLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 481
           CLENNPWHGTDIW+LKAEVN LITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDIWILKAEVNKLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 482 RVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           RVRQIGLVA EKLKKAAKTR+MEAMLLKH
Sbjct: 481 RVRQIGLVAWEKLKKAAKTRQMEAMLLKH 509

[Close]

BLAST of CmoCh20G009620 vs. NCBI nr
Match: XP_023513025.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023513026.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 961.4 bits (2484), Expect = 3.0e-276
Identity = 500/511 (97.85%), Postives = 505/511 (98.83%), Query Frame = 0


Query: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60
           MMATTTAITGLGAAKRLFNSSSYYSDFTEK+LY NDHRIGQTQVSPTKSVVITARSS NF
Sbjct: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKLLYVNDHRIGQTQVSPTKSVVITARSSPNF 60

Query: 61  SPRNQSSN-RHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKS 120
           SPRNQSS+ RHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKS
Sbjct: 61  SPRNQSSSKRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKS 120

Query: 121 MLEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRIS 180
           MLEKQWNLSFDQTVLADA RGKTQKKVPVTCSGVSARQRRMSS+RKIQSKHVLMAQPRIS
Sbjct: 121 MLEKQWNLSFDQTVLADAPRGKTQKKVPVTCSGVSARQRRMSSRRKIQSKHVLMAQPRIS 180

Query: 181 KQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGC 240
           KQLRPTIN ELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGC
Sbjct: 181 KQLRPTINSELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGC 240

Query: 241 EPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQG 300
           EPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQG
Sbjct: 241 EPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQG 300

Query: 301 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAK 360
           GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS+ALVENSRMLRLPTHMHERLGLIRNAK
Sbjct: 301 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRMLRLPTHMHERLGLIRNAK 360

Query: 361 VRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIA 420
           VRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIA
Sbjct: 361 VRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIA 420

Query: 421 DNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLS 480
           DNCLENNPWHGTDIW+LKAEVN LITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLS
Sbjct: 421 DNCLENNPWHGTDIWILKAEVNKLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLS 480

Query: 481 RERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           RERVRQIGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511

[Close]

BLAST of CmoCh20G009620 vs. NCBI nr
Match: XP_022986506.1 (RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_022986507.1 RNA polymerase sigma factor sigA-like [Cucurbita maxima])

HSP 1 Score: 937.9 bits (2423), Expect = 3.5e-269
Identity = 491/510 (96.27%), Postives = 495/510 (97.06%), Query Frame = 0


Query: 1   MMATTTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANF 60
           MMATTTAITGLGAAKRL NSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSS NF
Sbjct: 1   MMATTTAITGLGAAKRLLNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSPNF 60

Query: 61  SPRNQSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWEDEETDLKCTVEALLLLQKSM 120
           SPRNQSSNRH HCIKA       PSSPTAEP LHNSTIWEDEETDLKCTVE LLLLQKSM
Sbjct: 61  SPRNQSSNRHVHCIKA------APSSPTAEPGLHNSTIWEDEETDLKCTVEVLLLLQKSM 120

Query: 121 LEKQWNLSFDQTVLADALRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180
           LEKQWNLSFDQTVLADA RGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK
Sbjct: 121 LEKQWNLSFDQTVLADAPRGKTQKKVPVTCSGVSARQRRMSSKRKIQSKHVLMAQPRISK 180

Query: 181 QLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240
           QLRPTIN ELLQNRLKGYV+GLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE
Sbjct: 181 QLRPTINSELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300
           PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG
Sbjct: 241 PSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS+ALVENSRMLRLPTHMHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRMLRLPTHMHERLGLIRNAKV 360

Query: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDIW+LKAEVN LITTTLG+REREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDIWILKAEVNKLITTTLGNREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           ERVRQIGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 ERVRQIGLVALEKLKKAAKTRKMEAMLLKH 504

[Close]

BLAST of CmoCh20G009620 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 630.2 bits (1624), Expect = 1.5e-180
Identity = 347/517 (67.12%), Postives = 412/517 (79.69%), Query Frame = 0


Query: 5   TTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFSPRN 64
           T A+ GL   KRL +SS Y+SD TEK L  NDH   Q  ++ TKS  ITA+ ++N+SP  
Sbjct: 3   TAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKS-GITAKKASNYSPSF 62

Query: 65  QSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWE------DEETDLKCTVEALLLLQK 124
            SSNRH    KA+KE VD  S  T +P L N T  E      D++  +  +VEA+LLLQK
Sbjct: 63  PSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQK 122

Query: 125 SMLEKQWNLSFDQTVLADALRGK---TQKKVPV-TCSGVSARQRRMSSKRKIQSKHV-LM 184
           SMLEK WNLSF++ V ++   GK    +KK+PV TCSG+SARQRR+ +K+K    HV  +
Sbjct: 123 SMLEKSWNLSFEKAVSSE-YPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 182

Query: 185 AQPRISKQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRL 244
           +     KQ+R             GYV+G++SE++LSH EVVRLSKKIK GL L++ K+RL
Sbjct: 183 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 242

Query: 245 KERLGCEPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEM 304
           K+RLGCEPS++QLA+SLKISRA+L++ +MEC LAREKLAMSNVRLVMSIAQRYD +GAEM
Sbjct: 243 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 302

Query: 305 DDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLG 364
            DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVS+ALV+NSR LRLPTH+HERLG
Sbjct: 303 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 362

Query: 365 LIRNAKVRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 424
           LIRNAK+RLQEKGITPSIDRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 363 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 422

Query: 425 HHSYIADNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEIS 484
           HHSYIAD  LENNPWHG D   LK EV+ LI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 423 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 482

Query: 485 KRIGLSRERVRQIGLVALEKLKKAAKTRKMEAMLLKH 511
           KRIGLSRERVRQ+GLVALEKLK AA+ RKMEAM+LK+
Sbjct: 483 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of CmoCh20G009620 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 582.0 bits (1499), Expect = 4.6e-166
Identity = 319/483 (66.05%), Postives = 380/483 (78.67%), Query Frame = 0


Query: 5   TTAITGLGAAKRLFNSSSYYSDFTEKVLYANDHRIGQTQVSPTKSVVITARSSANFSPRN 64
           T A+ GL   KRL +SS Y+SD TEK L  NDH   Q  ++ TKS  ITA+ ++N+SP  
Sbjct: 3   TAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKS-GITAKKASNYSPSF 62

Query: 65  QSSNRHGHCIKAVKEHVDTPSSPTAEPRLHNSTIWE------DEETDLKCTVEALLLLQK 124
            SSNRH    KA+KE VD  S  T +P L N T  E      D++  +  +VEA+LLLQK
Sbjct: 63  PSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQK 122

Query: 125 SMLEKQWNLSFDQTVLADALRGK---TQKKVPV-TCSGVSARQRRMSSKRKIQSKHV-LM 184
           SMLEK WNLSF++ V ++   GK    +KK+PV TCSG+SARQRR+ +K+K    HV  +
Sbjct: 123 SMLEKSWNLSFEKAVSSE-YPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 182

Query: 185 AQPRISKQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRL 244
           +     KQ+R             GYV+G++SE++LSH EVVRLSKKIK GL L++ K+RL
Sbjct: 183 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 242

Query: 245 KERLGCEPSEDQLAISLKISRAKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEM 304
           K+RLGCEPS++QLA+SLKISRA+L++ +MEC LAREKLAMSNVRLVMSIAQRYD +GAEM
Sbjct: 243 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 302

Query: 305 DDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLG 364
            DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVS+ALV+NSR LRLPTH+HERLG
Sbjct: 303 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 362

Query: 365 LIRNAKVRLQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 424
           LIRNAK+RLQEKGITPSIDRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 363 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 422

Query: 425 HHSYIADNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREIIRLYHGLDNECLTWEEIS 477
           HHSYIAD  LENNPWHG D   LK EV+ LI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 423 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 468

[Close]

BLAST of CmoCh20G009620 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 166.0 bits (419), Expect = 7.9e-41
Identity = 115/309 (37.22%), Postives = 171/309 (55.34%), Query Frame = 0


Query: 204 SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAKLRSSVME 263
           S +LL+  E   LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR  +  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 264 CSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYV 323
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 324 YWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNAKVRL-QEKGITPSIDRIAESLNMSK 383
           +WWI+Q V K+L + SRM+RLP HM E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 384 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDIWVLKAEVNN 443
           K++     +     SLD++   + N  P E     IAD           DI + +    +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IAD----PEAVTSEDILIKEFMRQD 508

Query: 444 L--ITTTLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQIGLVALEKLKKAAK 503
           L  +  +LG RE+++IR   G+ D    T +EI + +G+SRERVRQI   A  KLK   +
Sbjct: 509 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 568

Query: 504 TRKMEAMLL 509
              ++  L+
Sbjct: 569 NNHLQQYLV 569

[Close]

BLAST of CmoCh20G009620 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-35
Identity = 101/313 (32.27%), Postives = 170/313 (54.31%), Query Frame = 0


Query: 195 LKGYVRGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISR 254
           L+ ++ G  +++LL+  E   L   I+  L LE+ KT+L+ + GCEP+  + A ++ IS 
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294

Query: 255 AKLRSSVMECSLAREKLAMSNVRLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSS 314
             L+S +     +REKL  +N+RLV+ IA++Y   G    DL+Q G +GL++ +EKF   
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354

Query: 315 KGFKISTYVYWWIRQGVSKALVENSRMLRLPTHMHERLGLIRNA-KVRLQEKGITPSIDR 374
            G + +TY YWWIRQ + K++ +NSR +RLP +++  LG +  A K  +QE    PS + 
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414

Query: 375 IAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDI 434
           +A  + +S +K+           S+ +  +   +     T      D+ +E  P      
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD----TTFQEITPDSGIE-TPTMSVGK 474

Query: 435 WVLKAEVNNLITTTLGDREREIIRLYHGLD-NECLTWEEISKRIGLSRERVRQIGLVALE 494
            +++  V NL+   L  +ER II+L  G+D  +  +  EI +  GLS+ERVRQ+   AL 
Sbjct: 475 QLMRNHVRNLL-NVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 534

Query: 495 KLKKAAKTRKMEA 506
           +LK+   +  + A
Sbjct: 535 RLKQNMNSHGLHA 541

[Close]

BLAST of CmoCh20G009620 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-35
Identity = 116/341 (34.02%), Postives = 167/341 (48.97%), Query Frame = 0


Query: 161 SSKRKIQSKHVLMAQPRISKQLRPTINPELLQNRLKGYVRGLLSEELLSHAEVVRLSKKI 220
           S KR+ + +   +   R+  +       E     +   V G      LS  E V+L   +
Sbjct: 76  SEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYL 135

Query: 221 KVGLALEERKTRLKERLGCEPSEDQLAISLKISRAKLRSSVMEC----SLAREKLAMSNV 280
           K G  LE   T ++E        + +++ L   R K + S  E       AREK+     
Sbjct: 136 KEGAKLENLGTSVEE-------NEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYR 195

Query: 281 RLVMSIAQRYDKMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALV 340
           RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD  +G+K+STYVYWWI+Q + +A+ 
Sbjct: 196 RLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIA 255

Query: 341 ENSRMLRLPTHMHERLGLIRNAKVRLQEK-GITPSIDRIAESLNMSKKKVKNATEAISKV 400
             SR+++LP  M E    +  A   L  K    PS + IAE LN++   V+ A E     
Sbjct: 256 HKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSP 315

Query: 401 FSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDIWVLKAEVNNLITTTLGDREREI 460
            SLDR A  +     G      I     E  P        +K E+  L+  +L  RE  +
Sbjct: 316 VSLDRVASQN-----GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLL-GSLTARESRV 375

Query: 461 IRLYHGLDNEC-LTWEEISKRIGLSRERVRQIGLVALEKLK 496
           + LY GL+ E  +++EEI K + LSRERVRQI  +AL+KL+
Sbjct: 376 LGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403

The following BLAST results are available for this feature:

BLAST of CmoCh20G009620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	2.1e-179	67.12	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	6.5e-125	48.96	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
O22056	1.1e-39	37.22	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
Q03065	1.2e-38	33.11	RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ...	[more]
P38023	3.0e-37	33.55	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]

BLAST of CmoCh20G009620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYA0	3.6e-283	100.00	RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1J7Q5	1.7e-269	96.27	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11148422...	[more]
A0A5D3BME8	6.5e-253	90.39	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	6.5e-253	90.39	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A6J1D604	9.8e-249	89.00	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]

BLAST of CmoCh20G009620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943800.1	7.3e-283	100.00	RNA polymerase sigma factor sigA-like [Cucurbita moschata]	[more]
KAG6571215.1	2.9e-279	98.63	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7011018.1	8.4e-279	98.62	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023513025.1	3.0e-276	97.85	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023513026...	[more]
XP_022986506.1	3.5e-269	96.27	RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_022986507.1 RNA pol...	[more]

BLAST of CmoCh20G009620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	1.5e-180	67.12	sigma factor A	[more]
AT1G64860.2	4.6e-166	66.05	sigma factor A	[more]
AT1G08540.1	7.9e-41	37.22	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.7e-35	32.27	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	2.9e-35	34.02	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 483..494 score: 53.71 coord: 319..327 score: 64.52 coord: 468..483 score: 48.75 coord: 448..460 score: 37.22 coord: 295..308 score: 49.68
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 295..308
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 447..496 e-value: 1.2E-11 score: 44.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 342..392 e-value: 2.3E-7 score: 32.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 426..504 e-value: 2.3E-20 score: 74.3
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 267..497 e-value: 8.1E-26 score: 88.6
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 351..421 e-value: 1.4E-11 score: 44.3
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 273..339 e-value: 1.6E-16 score: 59.8
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 141..341 e-value: 3.0E-30 score: 107.9
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 4..510
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 4..510
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 447..495 e-value: 7.31267E-8 score: 47.099
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 343..399
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 424..500
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 194..340

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G009620.1	CmoCh20G009620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0071461	cellular response to redox state
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity