CmoCh20G009390 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G009390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 4887659 .. 4888490 (-)
RNA-Seq ExpressionCmoCh20G009390
SyntenyCmoCh20G009390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTACTCTGTGAGTTTCCCAACTTTTTGTGCAGGTCTTGCTGAAATAAACACTAACAAAATGGAGCTATTTAGAGAGAAATAGAGGTGAAAATAACCAAATTGAAAGTAACAAACACTTCAATTATAACTTGAGTCTGTTAAGAAATGTGCTGGATTAAGAGTGGACATTGGCACCGCGTGCATCGATGGTTTTTTGACTGGCCACCATCTGCTCATTTGACAGCTTGATGATTATGCTGCGCCCAAATATGATCCCCCGCGGCCGTTTTTGAATAGCAGCGTGTTGGTGGGTTCCGGGGTTTACGAAGTTGTTGTGGATGGATCAATCAGTATAGGACCATTTTTTGCCACCCGTGGTTATGCAGCCAAAACCGATCGCACAAGAGGCAAGTTTCTCAGATTGTTGCCCCATTGTGGGTCAGATCGCCAGTAGCGGTCGCTCGGGTTTGTCGCCAATCAAGTCTTCTTGTGTTTAGCCATGGCTCTCCTAGTGCTATTGCTTCCCTCTAAAGCTGAATTGTAATGGTCATGACATTCATGGTGTAAGAGTGGAAGGCCTCATGCGCTCCTTGTTTGGCTTCAACCTTTTGGAGGAAAAAGGTTATTGGTTATGATGCTATATTAGAAACCACTTAATAAGTGGTACTTAGAAAGAATGTATTTTTATGTAGTTTAGTTTACGGGTAGATTTTAGATTTTGGTTGAAATTAGTGTAGCCCGGTCATGGCCATTGTTCATTTATTTTCAATAATAAGTATTTTTCAGCGAAATATGTTTAATTAAGAAGTTCTTATGAAGTGTATGGACTATCAAGAAGGAAAGTGCAC

mRNA sequence

ATGCATTACTCTCTTGATGATTATGCTGCGCCCAAATATGATCCCCCGCGGCCGTTTTTGAATAGCAGCGTGTTGGTGGGTTCCGGGGTTTACGAAGTTGTTGTGGATGGATCAATCAGTATAGGACCATTTTTTGCCACCCGTGGTTATGCAGCCAAAACCGATCGCACAAGAGGCAAGTTTCTCAGATTGTTGCCCCATTGTGGGTCAGATCGCCAGTAGCGGTCGCTCGGGTTTGTCGCCAATCAAGTCTTCTTGTGTTTAGCCATGGCTCTCCTAGTGCTATTGCTTCCCTCTAAAGCTGAATTGTAATGGTCATGACATTCATGGTGTAAGAGTGGAAGGCCTCATGCGCTCCTTGTTTGGCTTCAACCTTTTGGAGGAAAAAGGTTATTGGTTATGATGCTATATTAGAAACCACTTAATAAGTGGTACTTAGAAAGAATGTATTTTTATGTAGTTTAGTTTACGGGTAGATTTTAGATTTTGGTTGAAATTAGTGTAGCCCGGTCATGGCCATTGTTCATTTATTTTCAATAATAAGTATTTTTCAGCGAAATATGTTTAATTAAGAAGTTCTTATGAAGTGTATGGACTATCAAGAAGGAAAGTGCAC

Coding sequence (CDS)

ATGCATTACTCTCTTGATGATTATGCTGCGCCCAAATATGATCCCCCGCGGCCGTTTTTGAATAGCAGCGTGTTGGTGGGTTCCGGGGTTTACGAAGTTGTTGTGGATGGATCAATCAGTATAGGACCATTTTTTGCCACCCGTGGTTATGCAGCCAAAACCGATCGCACAAGAGGCAAGTTTCTCAGATTGTTGCCCCATTGTGGGTCAGATCGCCAGTAG

Protein sequence

MHYSLDDYAAPKYDPPRPFLNSSVLVGSGVYEVVVDGSISIGPFFATRGYAAKTDRTRGKFLRLLPHCGSDRQ
Homology
[Close]
BLAST of CmoCh20G009390 vs. NCBI nr
Match: KAG6571195.1 (hypothetical protein SDJN03_30110, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 9.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 5  LDDYAAPKYDPPRPFLNSSVLVGSGVYEVVVDGSISIGPFFATRGYAAKTDRTRGKFLRL 64
          LDDYAAPKYDPPRPFLNSSVLVGSGVYEVVVDGSISIGPFFATRGYAAKTDRTRGKFLRL
Sbjct: 32 LDDYAAPKYDPPRPFLNSSVLVGSGVYEVVVDGSISIGPFFATRGYAAKTDRTRGKFLRL 91

Query: 65 LP 67
          LP
Sbjct: 92 LP 93

The following BLAST results are available for this feature:
BLAST of CmoCh20G009390 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G009390 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G009390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571195.19.6e-27100.00hypothetical protein SDJN03_30110, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh20G009390 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G009390.1CmoCh20G009390.1mRNA