CmoCh20G008870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G008870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 4482334 .. 4482540 (-)
RNA-Seq ExpressionCmoCh20G008870
SyntenyCmoCh20G008870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCAATGGTGGAGTCATGGATGAGCGAGCTGGGGAAGTGGAAGAACAGAGTTGAAGCTCAGAAGAAGAAGAAGCCATTGATGCCCAAATCCAACCAATTCCTCCAAAACGACGTCGTCTCTGCACATTCCGACGACACAGAAACTGAAAGAGAACGAGAAACCACCATCTGTTTGCTCATCGATCGCTTCGCTCCGTCGTGA

mRNA sequence

ATGTCGGCAATGGTGGAGTCATGGATGAGCGAGCTGGGGAAGTGGAAGAACAGAGTTGAAGCTCAGAAGAAGAAGAAGCCATTGATGCCCAAATCCAACCAATTCCTCCAAAACGACGTCGTCTCTGCACATTCCGACGACACAGAAACTGAAAGAGAACGAGAAACCACCATCTGTTTGCTCATCGATCGCTTCGCTCCGTCGTGA

Coding sequence (CDS)

ATGTCGGCAATGGTGGAGTCATGGATGAGCGAGCTGGGGAAGTGGAAGAACAGAGTTGAAGCTCAGAAGAAGAAGAAGCCATTGATGCCCAAATCCAACCAATTCCTCCAAAACGACGTCGTCTCTGCACATTCCGACGACACAGAAACTGAAAGAGAACGAGAAACCACCATCTGTTTGCTCATCGATCGCTTCGCTCCGTCGTGA

Protein sequence

MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQNDVVSAHSDDTETERERETTICLLIDRFAPS
Homology
BLAST of CmoCh20G008870 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 51/76 (67.11%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1   MSAMVESWMSELGKWKNRVEAQ--KKKKPLMPKSNQFLQND-------VVSAHSDDTETE 60
           MSAMVESWM+ELGKW+NRVEAQ    KKPLMPKS Q LQ D          A SDDTET 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAKTHMADSDDTETS 96

Query: 61  RERETTICLLIDRFAP 68
              E+TICLLIDRFAP
Sbjct: 97  VLSESTICLLIDRFAP 111

BLAST of CmoCh20G008870 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQNDVVSAHSDDTETERERETTICL 60
          MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQNDVVSAHSDDTETERERETTICL
Sbjct: 1  MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQNDVVSAHSDDTETERERETTICL 60

Query: 61 LIDRFAPS 69
          LIDRFAPS
Sbjct: 61 LIDRFAPS 68

BLAST of CmoCh20G008870 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-13
Identity = 51/76 (67.11%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1   MSAMVESWMSELGKWKNRVEAQ--KKKKPLMPKSNQFLQND-------VVSAHSDDTETE 60
           MSAMVESWM+ELGKW+NRVEAQ    KKPLMPKS Q LQ D          A SDDTET 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAKTHMADSDDTETS 96

Query: 61  RERETTICLLIDRFAP 68
              E+TICLLIDRFAP
Sbjct: 97  VLSESTICLLIDRFAP 111

BLAST of CmoCh20G008870 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 1  MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQND--------VVSAHSDDTETER 60
          M+AMVESWMSELGKWKNRVEAQ KKKPLMPKS    Q D        V+SA SDD E   
Sbjct: 1  MAAMVESWMSELGKWKNRVEAQ-KKKPLMPKSKLCHQRDLKESENNLVISADSDDREATL 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP242.1e-1367.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6571144.14.3e-29100.00hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61756.14.3e-1367.11hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6605111.11.1e-0860.29hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..53
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 1..68
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008870.1CmoCh20G008870.1mRNA