CmoCh20G008820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G008820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionmitochondrial import receptor subunit TOM6 homolog
LocationCmo_Chr20: 4453669 .. 4455927 (-)
RNA-Seq ExpressionCmoCh20G008820
SyntenyCmoCh20G008820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTTGTCGACGAGGACCTTGGGTGAGTGACACGTCACTGTTCATGAATTTAAGGCCCTCGAGTTTTCATCTTCTGCGGACCATCACATTCCAATCTTCCATGTGTCTATTGCCACGTCACCAACCCTCCTCTCGATATATTATCAAACATAATTCCAACCTATCTCAAATTCATTAAATTCCGGTCCTATCCAAACCCAAACAACCTTCGAAGTTTATCCAAGGTATAACTCCGATCACTTAAAGAGATACACTAGTTGAGTAGGTCTCTAACTAAACTTAGCAACACCACTTCAAACAAAGCATTAACTCGAGCATCAATGCAAAGTCTGACCTATCACGCTAGCTTGTTTTTGAACCCGCTGGCATGTACTTATTCAACCATATTCTCGCATCATAGTATAATACAATTGTTCGATATATTACTTAAATCATATTCAATATGATGATATCATACAAATCTCATGCGATTAAATAGGAAAAGAATATTAAAAAAAAATTAAAATATTAAATATTGAAATAGGATAACGTTTTTGTTAGTTGAATTAATGGAAAAAATTGGCTTTCAAAAAGAATCGGAGGTGGAAGACACGTGGCAGAATTTGATTGGAGAAAGTGGGTAGATGTGGGCACAGAGGAGCAGAAAGTAAAAAGTGGTGGCCTACAGAAGAGGAGAGCAGGGATCTTCCATGAAATTTGATGCCAAAAAGGAAAACCCATTCATACGTAAAACAAAATATAATAATAATAATAATAATTAATTAATTAATTAAAAAGAAAATAAATAATTAAGATAATAAGAATGGATGTATGAGAACCACTGCAATAGCCATGTTTAGAGTCCACAGCCACAAAGTCATAAAAAAAATAAAAAATTAATTTTAATAATAAATAAATAAATAAAATTTGGGTCAAAAGGTGATATTGATGTGAAAGGAAACTTTTTACATAATGGAGCACTGAAAATATGTTGGCCAATACAAATTCTCTCCCTATATCATTGAATGATATTATAGGAAAAAATGTGTTTTTTTTTAATATTTAATAAAATTTTAAATTATTAATTTTATATCTAAAAAATAAATTTACAATATTTATCTAAGGTTTAAATTTTAAAAAATAAATATAGTTGTTATTCCATTCTCTTTAAAATATAAATTTGGTCCCAATAATTTCAAAAAAATTTAAAATTTAAGTGTTTTTGAAAGATACATTACAAATAATTTATATATTTTTGATAAGTTTTTATCTAATTTTTAAAAATTTAATTAAAAACAAATATCCATCCGAACAATTATATATTAAATAAAGAGTTGACAATGTTTTTTTTTATTATTTGCTCGATTTTATTAATTTAAATTTAAATTTCAATCGAATTAGATCATAGACTTAATTAAAATTGTAATTTTAATAATTATATATTAAAATTAAGTGATTTATCGAATTAAAAAAATCAATAAATTTATTAAATGTAAAATTAAAATTTGTATTTAATAATTTATTCATTCTTAAATATTTAAATTTTTTGAAAAAATTATTAGACTAAATTAATAAGAATATCCTTACAAACGTGTCTCAAAATACTCATAAACTTTCAAAAGTTTCAATAGTTTCAATAATATTAATTTTGGATGAAACAGTTAATATTGTATTTCAAAAAAAAAATTAACTCCAAAAGAGTTTAAAAGATACTCGTTAACTTCTAAAACATCCTTAAAACTTTCAAAAAAAAAAATATTATTAATGTCCTTAAATTTAAGGTTTAAAAAATACTAATAAATTTTCAAGAGTAACATTAAATGATTTTCATTCGTTCGGATAACAAAAAAATTTTAACATTTTTTTAAAATAAAGTACTAACCGTAAAAGTATTTTTAATTTTTTTAATTCGAAGAATATTTTAAAAATAAAATATTAACCATTTTTATTATTGATATTATTAGGAGTATTTTTTAAATAAAAATTAAAGAATATTTTTATGTAAAAATATGGTTCGGACTCGGCCTTAAACCCACCCCAACTCGAAAATCCCAAATTAGAGTTCTAGGGTTTTATTGTCGACTTTCGATCATTCCTCTGTTCTGCGAAAAATGTTTCCAGGAATGTTCATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

mRNA sequence

ATGCGATTTGTCGACGAGGACCTTGGGGTTTTATTGTCGACTTTCGATCATTCCTCTGTTCTGCGAAAAATGTTTCCAGGAATGTTCATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Coding sequence (CDS)

ATGCGATTTGTCGACGAGGACCTTGGGGTTTTATTGTCGACTTTCGATCATTCCTCTGTTCTGCGAAAAATGTTTCCAGGAATGTTCATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Protein sequence

MRFVDEDLGVLLSTFDHSSVLRKMFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Homology
[Close]
BLAST of CmoCh20G008820 vs. ExPASy Swiss-Prot
Match: Q9XIA7 (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

[Close]
BLAST of CmoCh20G008820 vs. ExPASy TrEMBL
Match: A0A6J1JEM5 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 GN=LOC111484330 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of CmoCh20G008820 vs. ExPASy TrEMBL
Match: A0A6J1FXI3 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662 GN=LOC111448504 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of CmoCh20G008820 vs. ExPASy TrEMBL
Match: A0A5A7TQX5 (Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001260 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of CmoCh20G008820 vs. ExPASy TrEMBL
Match: A0A0A0LP29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of CmoCh20G008820 vs. ExPASy TrEMBL
Match: A0A1S3C9U8 (mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LOC103498428 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of CmoCh20G008820 vs. NCBI nr
Match: XP_004154290.1 (mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_008459248.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis melo] >XP_011649217.1 mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_022943932.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022943933.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022948071.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022986654.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986655.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986656.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023007537.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023511843.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511844.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023532551.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_038900853.1 mitochondrial import receptor subunit TOM6 homolog [Benincasa hispida] >KAA0045963.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa] >KGN61761.1 hypothetical protein Csa_006573 [Cucumis sativus] >TYK13622.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of CmoCh20G008820 vs. NCBI nr
Match: XP_022148517.1 (mitochondrial import receptor subunit TOM6 homolog [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLEF 54

[Close]
BLAST of CmoCh20G008820 vs. NCBI nr
Match: MBA0872591.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKTHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]
BLAST of CmoCh20G008820 vs. NCBI nr
Match: MBA0815198.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
           MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 90  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 143

[Close]
BLAST of CmoCh20G008820 vs. NCBI nr
Match: XP_038992352.1 (mitochondrial import receptor subunit TOM6 homolog [Hibiscus syriacus])

HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 49/54 (90.74%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPYVLHYLSDEK+ELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYVLHYLSDEKDELKLEF 54

[Close]
BLAST of CmoCh20G008820 vs. TAIR 10
Match: AT1G49410.1 (translocase of the outer mitochondrial membrane 6 )

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

The following BLAST results are available for this feature:
BLAST of CmoCh20G008820 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XIA73.1e-1875.93Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=37... [more]
BLAST of CmoCh20G008820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JEM56.2e-22100.00mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1FXI36.2e-22100.00mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662... [more]
A0A5A7TQX56.2e-22100.00Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. mak... [more]
A0A0A0LP296.2e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1[more]
A0A1S3C9U86.2e-22100.00mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LO... [more]
BLAST of CmoCh20G008820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004154290.11.3e-21100.00mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_0084592... [more]
XP_022148517.13.7e-2198.15mitochondrial import receptor subunit TOM6 homolog [Momordica charantia][more]
MBA0872591.15.4e-2088.89hypothetical protein [Gossypium schwendimanii][more]
MBA0815198.15.4e-2088.89hypothetical protein [Gossypium harknessii][more]
XP_038992352.15.4e-2090.74mitochondrial import receptor subunit TOM6 homolog [Hibiscus syriacus][more]
BLAST of CmoCh20G008820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G49410.12.2e-1975.93translocase of the outer mitochondrial membrane 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034554Mitochondrial import receptor subunit TOM6 homologue, plantsPANTHERPTHR35999MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM6 HOMOLOGcoord: 24..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008820.1CmoCh20G008820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005742 mitochondrial outer membrane translocase complex