CmoCh20G008610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G008610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich RNA-binding protein-like
Location	Cmo_Chr20: 4334695 .. 4336494 (-)
RNA-Seq Expression	CmoCh20G008610
Synteny	CmoCh20G008610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGGGACCAATCACACGGCTTTTAGGTTAACCCTGATTGCACAAAAACCGCGTCAGTTCGATTTGCAGCAAACCCTAAAACTAACCCTAGTTAAATTCGGCCTTCTATATAACCAACCCATTGCTTCACCACCATCTCATTGTGCTCTTCTTTGGAGGTGTGGATTTGTGTTGGGTCCCCCTCTTTCTCTCATTTCTTCTTCTTCTACCCCGATTTAGGGTTAGGGTTTTCAGTTCCGATTTAATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGGTCCGTTTGTCGTCGAGATCTGGATTTGTCGATCCGAAATCTGATCTGTGACTCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCTCCTTTGATCGGTACGTTCACCTTCATCCTCTTTACAGAGACGAAGAACGATCGGTTTCTTTCTTTTTTTTCTTTTTTTTTTTTTTTGATTTTTTTGTTATTGCGAAATCGTTAATCGGTGTTGTTCTGTGGCTGATCTTGGTTTTCCTGTGATTTTTTCGTTCAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTTGAGGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGGCGTAGTATTACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGACGTCGTGAAGGTGGTGGTGGTGGTGGATACAACCGCGGCGGCGGTGGATACGGTGGTGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGGTACGGTGGTGGTGGTGATGGTGGCTCCCGTTACAACCGGGGAGGCGGAGGCGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAGGCTAAAATTTACGAATTAGCTTTTTGTTTTTGAAGTACTGGTGTGTCGAAAAAAAATCTTAGCAGCCTCTTTCATTATCAATTTGCGACTGTTTCTGTATTTCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTTCTTGTTCCTCATTATCACTATGTTACGATGAAGAAAAAATTGACAAAAAAATTTAGTATAGCTCTTCGATCTCCCCGTTGATCTTCTTCCCTGATCTCCTCTATGGCCAAGATTTATCCCAACAGGGAACTTTTCAAAAAAAAAAATCTCAGTCATTATTGATTTTCTCGTGTTCAGTTGGAAAGAGCGAAGAAATAGTTGTCTCTATTTTGATCTGATCCGATTTGACAGCTGGTCGGATTATCTTGGCGGAGTTGAGATATTTTCATTCAAGTTAAGATAATTTTCAATATTCGGTCTTTTGTATTGGGCCCACGTTGTGTTGTCTATCTTGGGCTGCGTGATAGTTGTTGGGCTTTGGGAACTTTTCACATGGGCCTATGTCGGCCTGTTTTTTTTTTTTTTTTGTACGGAAAAAGTGGTGGGATTCTATGGTGTGCATTGTGTATTAATTACGCCTATTGTTTTTCGGGTAATTCTTTGCTTAGTTTGGAAATGGGTTTTTGTCAATATTGTTCTTGTTATAATTTCCCCTGTTTTATTTTTATTATTTTTATTTTTTATTTTGAATTCCCTGACACACCTCAGTTTATG

mRNA sequence

CAGGGGACCAATCACACGGCTTTTAGGTTAACCCTGATTGCACAAAAACCGCGTCAGTTCGATTTGCAGCAAACCCTAAAACTAACCCTAGTTAAATTCGGCCTTCTATATAACCAACCCATTGCTTCACCACCATCTCATTGTGCTCTTCTTTGGAGGTGTGGATTTGTGTTGGGTCCCCCTCTTTCTCTCATTTCTTCTTCTTCTACCCCGATTTAGGGTTAGGGTTTTCAGTTCCGATTTAATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTTGAGGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGGCGTAGTATTACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGACGTCGTGAAGGTGGTGGTGGTGGTGGATACAACCGCGGCGGCGGTGGATACGGTGGTGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGGTACGGTGGTGGTGGTGATGGTGGCTCCCGTTACAACCGGGGAGGCGGAGGCGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAGGCTAAAATTTACGAATTAGCTTTTTGTTTTTGAAGTACTGGTGTGTCGAAAAAAAATCTTAGCAGCCTCTTTCATTATCAATTTGCGACTGTTTCTGTATTTCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTTCTTGTTCCTCATTATCACTATGTTACGATGAAGAAAAAATTGACAAAAAAATTTAGTATAGCTCTTCGATCTCCCCGTTGATCTTCTTCCCTGATCTCCTCTATGGCCAAGATTTATCCCAACAGGGAACTTTTCAAAAAAAAAAATCTCAGTCATTATTGATTTTCTCGTGTTCAGTTGGAAAGAGCGAAGAAATAGTTGTCTCTATTTTGATCTGATCCGATTTGACAGCTGGTCGGATTATCTTGGCGGAGTTGAGATATTTTCATTCAAGTTAAGATAATTTTCAATATTCGGTCTTTTGTATTGGGCCCACGTTGTGTTGTCTATCTTGGGCTGCGTGATAGTTGTTGGGCTTTGGGAACTTTTCACATGGGCCTATGTCGGCCTGTTTTTTTTTTTTTTTTGTACGGAAAAAGTGGTGGGATTCTATGGTGTGCATTGTGTATTAATTACGCCTATTGTTTTTCGGGTAATTCTTTGCTTAGTTTGGAAATGGGTTTTTGTCAATATTGTTCTTGTTATAATTTCCCCTGTTTTATTTTTATTATTTTTATTTTTTATTTTGAATTCCCTGACACACCTCAGTTTATG

Coding sequence (CDS)

ATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTTGAGGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGGCGTAGTATTACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGACGTCGTGAAGGTGGTGGTGGTGGTGGATACAACCGCGGCGGCGGTGGATACGGTGGTGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGGTACGGTGGTGGTGGTGATGGTGGCTCCCGTTACAACCGGGGAGGCGGAGGCGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN

Homology

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BLAST of CmoCh20G008610 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37
Identity = 117/159 (73.58%), Postives = 129/159 (81.13%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMR 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF +E SMR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGG---GGGGGYGGRREGGGGGGY-- 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG   GGG   GGGGGYGGRREGGGGGGY  
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121

Query: 124 --NRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRY 156
               GGGGYGGGGGGYGG   GG  D GYGGGG GGSR+
Sbjct: 122 RREGGGGGYGGGGGGYGGRREGG--DGGYGGGG-GGSRW 157

[Close]

BLAST of CmoCh20G008610 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 119/177 (67.23%), Postives = 136/177 (76.84%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF  E 
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SM  AIE MNG+ LDGR+ITVN+AQ RGGGGGGG   G GGGGGGYGGR     GGGY  
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG---GYGGGGGGYGGRE----GGGYGG 120

Query: 121 GGGGYGG---GGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGG-WRN 174
           GGGGYGG   GGGGYGGGGYGGG   GY GG +GG  Y  GGG GG  G  GG WRN
Sbjct: 121 GGGGYGGRREGGGGYGGGGYGGG-GGGY-GGREGGGGYGGGGGYGGNRGDSGGNWRN 168

[Close]

BLAST of CmoCh20G008610 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 121/172 (70.35%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG GGGG    GG GGGGGY      GGGGGY  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGG----GGRGGGGGY----RSGGGGGYGG 120

Query: 121 GGGGYGGGG--GGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGG 171
           GGGGYGGGG  GGY GGG GG   RG GGGG GG     GG GGG GGS GG
Sbjct: 121 GGGGYGGGGREGGYSGGG-GGYSSRGGGGGGYGGGGRRDGGEGGGYGGSGGG 163

[Close]

BLAST of CmoCh20G008610 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 120/182 (65.93%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGG-----GGGGGY-GGRREGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GGG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEG 172
           GGG   GGGGY GGGGGY     GGG YGGGR    GGGG GG      GGG GG G  G
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE--GGGGYGGGE----GGGYGGSGGGG 176

[Close]

BLAST of CmoCh20G008610 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-33
Identity = 124/175 (70.86%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGG--GGGGYGGRREGGGGGGY 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG G GGG   GGGG  GGGGYGG   GGG GG 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGG--GGGGYGGG 120

Query: 121 NRGGGGYGGGGGGYGGGGYGGGRDRGYGGGG--DGGSRYNRGGGGGGGGGSEGGW 172
            R GGGY GGGGGY   G GGG   GYGGGG  DGG  Y  G GGG GGG  GGW
Sbjct: 121 RREGGGYSGGGGGYSSRGGGGG---GYGGGGRRDGGG-YGGGEGGGYGGGGGGGW 169

[Close]

BLAST of CmoCh20G008610 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.1e-70
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of CmoCh20G008610 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 8.1e-62
Identity = 167/177 (94.35%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR--GGGGGGGGYGGRREGGGGGGY 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR  GGGGGGGGYGGRRE GGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGGY 120

Query: 121 NRGGGGY--GGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           NRGGGGY  GGGGGGYGGGGYGGGRDRGY GGGDGGSRYNR    GGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGY-GGGDGGSRYNR----GGGGGSEGGWRN 171

[Close]

BLAST of CmoCh20G008610 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 164/177 (92.66%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYNRGGGGGGGGYGGRREGGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR  GGGGGGGYNR GGGGGGGYGGRREGGGGGGY
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNR-GGGGGGGYGGRREGGGGGGY 120

Query: 121 NRGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGDG-GSRYNRGGGGGGGGGSEGGWRN 174
           NRGGGGYGGGGGGY GGGGYGGGRDRGYGGGG G G RY R  GGGGGGGSEGGWRN
Sbjct: 121 NRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQR--GGGGGGGSEGGWRN 174

[Close]

BLAST of CmoCh20G008610 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 163/175 (93.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGGYGGRREGGGGGGYN 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGYNR GGGGGGGYGGRRE GGGGGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNR-GGGGGGGYGGRRE-GGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDG-GSRYNRGGGGGGGGGSEGGWRN 174
           RGGGGYGGGGGGYGGGGYGGGRDRGYGGGG G G RY R  GGGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQR--GGGGGGGSEGGWRN 171

[Close]

BLAST of CmoCh20G008610 vs. ExPASy TrEMBL
Match: A0A6J1L3C8 (glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 147/176 (83.52%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYNRGGGGGGGGYGGRREGGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR  GGGGGGGYNRGGGGGGGGYGG          
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGGYGG---------- 120

Query: 121 NRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDG-GSRYNRGGGGGGGGGSEGGWRN 174
             GGGGYG      GGGGYGGGRDRGYGGGG G G RY R  GGGGGGGSEGGWRN
Sbjct: 121 --GGGGYG------GGGGYGGGRDRGYGGGGGGDGGRYQR--GGGGGGGSEGGWRN 156

[Close]

BLAST of CmoCh20G008610 vs. NCBI nr
Match: XP_022943401.1 (glycine-rich RNA-binding protein-like [Cucurbita moschata])

HSP 1 Score: 275.0 bits (702), Expect = 4.4e-70
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of CmoCh20G008610 vs. NCBI nr
Match: KAG6571119.1 (hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.2 bits (674), Expect = 7.7e-67
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRRE-GGGGGGYN 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRRE GGGGGGYN
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNR  GGGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNR--GGGGGGGSEGGWRN 172

[Close]

BLAST of CmoCh20G008610 vs. NCBI nr
Match: XP_022986624.1 (glycine-rich RNA-binding protein-like [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-61
Identity = 167/177 (94.35%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR--GGGGGGGGYGGRREGGGGGGY 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR  GGGGGGGGYGGRRE GGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGGY 120

Query: 121 NRGGGGY--GGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           NRGGGGY  GGGGGGYGGGGYGGGRDRGY GGGDGGSRYNR    GGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGY-GGGDGGSRYNR----GGGGGSEGGWRN 171

[Close]

BLAST of CmoCh20G008610 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 166/174 (95.40%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR GGGGGGGYGGRRE GGGGGYNR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR-GGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGY-GGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           GGGGYGGGGGGYGGGGY GGGRDRGY GGGDGGSRYNR  GGGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGGRDRGY-GGGDGGSRYNR--GGGGGGGSEGGWRN 169

[Close]

BLAST of CmoCh20G008610 vs. NCBI nr
Match: KAG6605080.1 (hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 4.1e-60
Identity = 163/174 (93.68%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFV+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGGYGGRREGGGGGGYN 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGYNR GGGGGGGYGGRRE GGGGGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNR-GGGGGGGYGGRRE-GGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           RGGGGYGGGGGGYGGGGYGGGRDRGYGGGG  G RY R GGGGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQR-GGGGGGGGSEGGWRN 171

[Close]

BLAST of CmoCh20G008610 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34
Identity = 120/182 (65.93%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGG-----GGGGGY-GGRREGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GGG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEG 172
           GGG   GGGGY GGGGGY     GGG YGGGR    GGGG GG      GGG GG G  G
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE--GGGGYGGGE----GGGYGGSGGGG 176

[Close]

BLAST of CmoCh20G008610 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-33
Identity = 117/171 (68.42%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+ RGGG  GGG GGRRE  GGGGY+ 
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH-RGGGSYGGG-GGRRE--GGGGYSG 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGW 172
           GGGGY   GG  GGG YGGGR    GGGG GG      GGG GG G  GGW
Sbjct: 121 GGGGYSSRGG--GGGSYGGGRRE--GGGGYGGGE----GGGYGGSGGGGGW 159

[Close]

BLAST of CmoCh20G008610 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-30
Identity = 112/171 (65.50%), Postives = 127/171 (74.27%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF +E +MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRG--------GGGGGGYNRGGGGG-GGGYGGRREGGG 123
            AIE MNG+ LDGR ITVNEAQ RG        GG GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYNRGGGGYGGGGGGYGGGGYGGG--RDRGYGGGGDGGSRYNRGGGGGG 164
           GGGY R  GGYG GGGG GG GYGGG  R+ G  GGGDGGS    GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGGG-GGRGYGGGGRREGGGYGGGDGGS---YGGGGGG 168

[Close]

BLAST of CmoCh20G008610 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 128.3 bits (321), Expect = 6.2e-30
Identity = 90/137 (65.69%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF +E +MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNRGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGG   G GG GGGY      GGGGGY+    
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGG---GRGGSGGGY----RSGGGGGYS---- 121

Query: 124 GYGGGGGGYGGGGYGGG 141
             GGGGGGY GGG GGG
Sbjct: 122 --GGGGGGYSGGGGGGG 125

[Close]

BLAST of CmoCh20G008610 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-17
Identity = 91/170 (53.53%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 9   RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMRSAIEA 68
           + F+GG+A++ D  +L +AF+ +GE+V+ +++ DRETGRSRGFGFVTF   ++  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQR---GGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNRGGGGY 128
           ++G++L GR + VN A  R   GG GGGGY    GGGGGGYGG    GGG G   G GGY
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGY----GGGGGGYGGSGGYGGGAGGYGGSGGY 160

Query: 129 GGGGGGYG---GGGYGGGRDRGYGG---GGDGGSRYNRGGGGGGGGGSEG 170
           GGG GGYG   GGGYGG    GYGG   GG GG     GG GGG G S G
Sbjct: 161 GGGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGG 206

The following BLAST results are available for this feature:

BLAST of CmoCh20G008610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03878	1.0e-37	73.58	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q99070	1.8e-34	67.23	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49310	1.5e-33	70.35	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03250	1.5e-33	65.93	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P49311	5.8e-33	70.86	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of CmoCh20G008610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRL7	2.1e-70	100.00	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1JGK0	8.1e-62	94.35	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]
A0A6J1L652	1.7e-59	92.66	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G631	1.7e-59	93.14	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1L3C8	1.3e-51	83.52	glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cuc...	[more]

BLAST of CmoCh20G008610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943401.1	4.4e-70	100.00	glycine-rich RNA-binding protein-like [Cucurbita moschata]	[more]
KAG6571119.1	7.7e-67	98.28	hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022986624.1	1.7e-61	94.35	glycine-rich RNA-binding protein-like [Cucurbita maxima]	[more]
XP_023512522.1	2.8e-61	95.40	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605080.1	4.1e-60	93.68	hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh20G008610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.1	1.1e-34	65.93	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	1.6e-33	68.42	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	3.6e-30	65.50	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	6.2e-30	65.69	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	2.7e-17	53.53	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 7.7E-28 score: 108.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 5.9E-23 score: 80.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.604216
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..107 e-value: 7.8E-31 score: 108.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..173
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..164
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..164
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G008610.1	CmoCh20G008610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding