CmoCh20G008330 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G008330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 4157724 .. 4158363 (+)
RNA-Seq ExpressionCmoCh20G008330
SyntenyCmoCh20G008330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTTTAGATAAGAATCGTATGGTTTTAAATTATTTCTTTAAGATCCTTTGATTTCTTTGTGTTTTATTGTGTATAGTTCCTTCTTGTTCTGTTTATCTTTCTGGGGTTTGCAGAAATTCCCATGAACACTTAGATTTAGTGTTGTGTTGGTATTTGGGATTCTTGGGTTCCGCCGATCGGGTGCTGTTTTCCACCTTTTTGGTTCCCTCCGACACCCACAGCCGTCTCGGATTTCAGGGTAATTTTAGCTTAAACTATACTTATTGCTTAATCACTTTTGTTTGTTTATTCAAATATGAACTTAAAATATTCAATTCTTGTTGATTTCTTGTGCTGATCAGCTCTGCATGCAGGTTATGAGTAGCTTTATGTTGTTTGTTTGTTCTATTTCTTCTTGTTTTTGTGGGGTTTGGAGCTTTTTTGATTGATATTGTTGTGAATTTGGCTGCATATTAAGTAACTGGAGGATCTGTGGTCTTAGTGTTTGTTTTAACACTTCATTAGTCATTGAAAACCCTGTGGATTTGCCATCTTGGGTTGAGTTTTTGTTTGTTTGTTGACATTCAATTCAACTTTGATTAATTGGGGTCTGAAAGTTTTGTTAGGTGACAGCGTAGAAGCAGAAGAATTCTGA

mRNA sequence

ATGCAAATTTTAGATAAGAATCTTCCTTCTTGTTCTGTTTATCTTTCTGGGGTTTGCAGAAATTCCCATGAACACTTAGATTTAGTGTTGTGTTGGTATTTGGGATTCTTGGGTTCCGCCGATCGGGTGCTGTTTTCCACCTTTTTGGTTCCCTCCGACACCCACAGCCGTCTCGGATTTCAGGGTGACAGCGTAGAAGCAGAAGAATTCTGA

Coding sequence (CDS)

ATGCAAATTTTAGATAAGAATCTTCCTTCTTGTTCTGTTTATCTTTCTGGGGTTTGCAGAAATTCCCATGAACACTTAGATTTAGTGTTGTGTTGGTATTTGGGATTCTTGGGTTCCGCCGATCGGGTGCTGTTTTCCACCTTTTTGGTTCCCTCCGACACCCACAGCCGTCTCGGATTTCAGGGTGACAGCGTAGAAGCAGAAGAATTCTGA

Protein sequence

MQILDKNLPSCSVYLSGVCRNSHEHLDLVLCWYLGFLGSADRVLFSTFLVPSDTHSRLGFQGDSVEAEEF
Homology
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BLAST of CmoCh20G008330 vs. NCBI nr
Match: KAG6571088.1 (hypothetical protein SDJN03_30003, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 9.8e-21
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 17 GVCRNSHEHLDLVLCWYLGFLGSADRVLFSTFLVPSDTHSRLGFQGDSVEAEEF 71
          G   NSHEHLDLVLCWYLGFLGSADRVLFSTFLVPSDTHSRLGFQGDSVEAEEF
Sbjct: 24 GGAGNSHEHLDLVLCWYLGFLGSADRVLFSTFLVPSDTHSRLGFQGDSVEAEEF 77

The following BLAST results are available for this feature:
BLAST of CmoCh20G008330 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008330 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571088.19.8e-2194.44hypothetical protein SDJN03_30003, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh20G008330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008330.1CmoCh20G008330.1mRNA