CmoCh20G007990 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G007990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionGlutamine amidotransferase type-1 domain-containing protein
LocationCmo_Chr20: 3940334 .. 3944919 (+)
RNA-Seq ExpressionCmoCh20G007990
SyntenyCmoCh20G007990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTACATGTAAGTATGTTACATCTGCACAATGTTGTCTTAAAAAATCTGAAGGGTCATACTAGAGTTAGTGTTGTAATTTGAAGATCTGCTTCTTTAACATGTGTCTGGTCCTGGACATACTCTTTGAGCATCAAAAAGTGACTATCATATAAGTAATACATCGGAGGAACCCCAATTCATAAACCACCTCATCAATTTCTCTGCATAACATTAAGACATTTGGTTGACTTGGGAAGCATCTACTTTTACATTGTTAATTGGTTTTGTTTTGTTCTATATACTAGACTAACTCTTAATGTAGTGATTAGTTTCTTCCTTTTACTTTTAATCCGGACATTAAGGAAAGACTTCCATATTATTGACACATAGAAAATGTGCATCGATAAATAAATTTAATCGCTTACGAATCAAAAGTTTCAGTTGACAAAGATTCTTGCTTGCTTATATAGGAAACTGAAAGTTTTGTACCTCTAATGGTCACTTCCATTGCAACTGATATTTGTCATTGATGTTCAAGTGGCTTCATTCCACCTTTTCTTATCTAATCATCTACATATAAAGACTCCCTTTACATTGACATTCAACTCTACCTTCTATAGACAGAAAACAAGAAGAAAAGTTGTCAAAACTGCAAGCTGGATTGCTCTTTGTTTTTTTTTTTTCAATCTTTTATGAAGTATACAGTCTGGAGGTGACATCTATGAAGGCTTCTTCATTGCAGGGAATGGTCAAACCTCCTGTTGGATGGTTGAATCCAAACTCTTCTTCAGCCCTACTGAGCAAATTTACAAATGAAGGATGGTTCAAGTAAGATATTGGAACCAAAAACCGCTTCCTCTGAATTTCTCCCACGTATACTGCAATGTGACCTTTGGGTACGTTGGATTGACCTCGTACAGATACTGACTGTGTCTTCAGAATTTGTTTGGCACTAAAGAGAAGAGAAGGTAGACGAATTCCCATGTCTAAAATTGATTGAAATGAAAGAACAGTCAAGTACTGACTTCGAATGGTTGAGCTCTTGCGATGAATCTGGAAATCGTAGATTGTACTGCTTAAATGAGAATATGTGAGAAGATTTGAGTTGGATATCTGCTGTTTATTTGGTATGTATATATAGGAGATAAGAACGAAAGTATTGAAGATATCCACATGGGGTGCTCCAGTAGTTGAAGTACAGTTGTTATCAAATTTTATCCAAATTCTGGTACTGTGGATTTCTCTGTCCCAATAAATGAAGTCATATTCAAACATACATATCTGGCTGAAAACTATTAACAGGTATTGAGAAAATGACTAGAAGCGATTCGAAAATTTGGACTGGTCCAAAAATATGTGGTATATATGATGGTAAATGTTGCGACATTATCAGCATAAATGGACCTAAATGTCTGGAGGATGTTTATAATCTTAGAGGCTTGTCATTAAGGTGGTTCTAATATATGTTTGCTGCCTTGCAATACTAAGTGGACGAGGTGCTTCTCATCTCAACATACAAAAATCCATCTCCCAACAAACTGCTGGGAGATGATGTTGAACTTTTCTGCATATTTTTTTTTTTTGTTGGATTTCCATTTATATCTTTTGTTTTATTGATTGTGTATTGTGCATATATTCCTTATTTATATTTGTAATATTTCCTTTCTTATTGATTGATGGGACAATGATAACCATATTATTTTGAAGGAAGGTACCGATCCCATTAACGTGCACCCCTACCAGTATCTGCATACTCAAAAAGGGGAAACTGAATGCATGATAGCTGACATGCTAGATGCGGGTATTGTTCAAATAAATGTAAGTTCTTTCTCCAGTCCATTGATCTTAGTGAAAAAAGGGGAGCTGAAGGGTTTCTGTGAGTTCGTAGTTATGTCTTTTGGTTTAACCAATGCACTGAGATTAGAAATAATTTGTTTAAGAACATCATTTTAGAATGAGATTACCGGCACTCTTGAATTGGCGGGGTGTTTGGCTGTTTTTGTATTCGTTTGGTAATCAGTATGAAATCAGTTTCCTTAAGGAACTGTAGATCAAAAGTTTCAGTTGATGAAATTGCAAAATGAAAATCTTAGTTTCACTGCAATTGATATTTTTCATTGATATTCAAGTGGTTCTGTAATTCTCCACCTTTTCAAATAAAATTCACTTTATAGTAACATTTGACTCTTATCTCCCGCAGAAAAAGAAGATTTGAAAAAAGTTGTCAAAATTTCAAGCGAGATTGCTCTTTGTTCTCAAGCTTTCATGAAGTACATTAAGCATTGATTATTGAAACTCCTCAGTCCTTGCTTAGTACATTAAGCATTGATTAACTGTGAAGCCTACCAATTTGAACGAGCTTTTAGTTGATGTTTTTCTGTAGCATATGGATTGTGTCACAATTGCACCCCTCCGGGATGTTTATAAGCAATTGTACGGCACTTATTCTGTGCACCAAGTGAGTCAGGCAACTCAAAATTGTGTCGCCTACAGCCTGATGACGTATGCTCAAGCTTCTGGGCTCGTTTGAGAATAAAGTTTTAGAAAATGGGTAGAGAGATTTTTGAAAGAGGGTTTGAAAGCAAGATTAAAAGAAAGGTTGAAAAGCAACACACCGGCTTAAATAATATATAACTCTGAGTAGGAAAAATTGACAACTAGTCGCATTCCTCTATAATAGATTTTGAGGCATTTCAAGTCTACAGTATAATTTTATCGAAACTTCATATACTTAGGAAATACAAAAAAATGAACTATACATAATGAAAGCGATAAAAGAAAACAGTAAAGTGATATATGTGGCCATGGACAATACGTCTTGGACAAACATGACTGTGACACATTACATCTATTTCTTGGGACATGGATCATTAGCAATGGGAAAGAAGTTACATGTAACTTTTCTTGACCTTCTTCAAACTGATTAACTGACCATTCCATTTTCTATGTTTTCAGGCACATGGACCTACTTGCATTTCAACTTGGATTTGACTCGAGACTCGCTTCATAGAGCACGATATCCTCTTCAGCTTGGCCACTTCCTGGCCCCAGCCTCGGATCCACTTAGCTCCATATTGCAGGACTTTCGTCAAAGCAGTCGCTCACCGAGCACCTCGCCAACAAAAATTAAGTTCATTTTTCCATATGGAAGTATGTTAAGATTTGCAGTCACAGCTCCAAATTCATTGGCTCAGGTCACTGCTTTCTTTTTCTTGTCCTTGAAGGTTTTGAGGATTCATTATCTGAGATAAAAATTTTACTACCAATACTGTAAGATCCCACGTCGGGTGGAGAGGAAAACGAAACATTTCTTATAAGGATGTGGAAATCTCTTCCTAGCAGACGTGTTTCAAAACCTTGAGAGGAAGCCCGGAAGGAAAAGTCTGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGGGCTTGGGCTGTTACAAATGATATTAGAGCCCGACACCGAACAGTGTGTCAGCGATGACGCTGGAGGCCTTCAAGGAGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAGAGGAATGAAGCATTCCTTATAAGGGTGTGGAAACTTCTTCCTAGCAGACGCGTTTTAAAATCTTGAGGGAAAGCCCGAGAGGACCATCTTCGCACTTAATTGCAAACAAGAATAAGTTGATAATTAGTGGTGAATAAGGCCTTGTTTGCAAAAAAAAAAAATCAAAGTTTTATTTCAACTGATATTTGTCAGGCTGTTCAAGTGGCTTTGTAACTCTCCACTTTTTCTAATCTAACCATTTACATACAAAATTTTCCTTATACACTAAGATGAAGAGGAAAAATTTGTCAAAACTGTGAGGAGAATTGCTCCTTGTTCACAAATCATTCATGAAGTGTGCAGTCTAGAAGTAACATCAATGAAGGCTTCTTCTTTGCAGGGAATCGTCAAACCTCCAGTTGGTTGGCTGAATCCAAACTCTTCTTCAGCCCTATCGAGCAAGTCCACGAACGAAGGATGACTCAAGTACGATATCGGAACAAAAAACCGCTTCCTCTCGGTTTCTCCTACGTAAACCGGAATGTGGCCTTTGGGAACATTTGACTGACATACTACAGAAACAGACTGCATCTTGAGAATTTGCTTAGCAGCACCAAGGAGTATCGAAAGCAAACGAATTCCCATCGTAAATTTGATTGAAGTGAGACGACAGCAACGAAGACGAAGAACGTCAAACGGGTATTGAATATGGATGTAGAAGTAGCTATAGCTAGTAAACTTCAATGCTTGGATGAGAAAATGTGAGAGATTTAAGTTGTAGATCAGCTGTTTGTTTGGTATCTATATATAGGCAACCAAGAAAGCTGGCTTCATCAATGGCTCACATGGGTTGCTCATTTGAACCAATTTATGGTAAGCTGGCCCCATCAGCCACAACATATGAAGGGTCGCAGATACTTGGAGGTACTTCCAAATAGCATTACAACCATGCCAAGGAAACTAGATGTTGCCCCAATAAAGGCCTGGCGTCGCCCAACACTTGGCACAAATTTGGGGGCTGATATCTCCACATCCACAAAATTCTTGTTTGTGGCCGAGGGGGAAAGTGCGTTGGAACAAAATTAG

mRNA sequence

ATGTTTCTACATGGAATGGTCAAACCTCCTGTTGGATGGTTGAATCCAAACTCTTCTTCAGCCCTACTGAGCAAATTTACAAATGAAGGATGGTTCAAATGCGGGTATTGTTCAAATAAATGCACATGGACCTACTTGCATTTCAACTTGGATTTGACTCGAGACTCGCTTCATAGAGCACGATATCCTCTTCAGCTTGGCCACTTCCTGGCCCCAGCCTCGGATCCACTTAGCTCCATATTGCAGGACTTTCGTCAAAGCAGTCGCTCACCGAGCACCTCGCCAACAAAAATTAAGTTCATTTTTCCATATGGAAGTATGTTAAGATTTGCAGTCACAGCTCCAAATTCATTGGCTCAGGGAATCGTCAAACCTCCAGTTGGTTGGCTGAATCCAAACTCTTCTTCAGCCCTATCGAGCAAAAACAGACTGCATCTTGAGAATTTGCTTAGCAGCACCAAGGAGTATCGAAAGCAAACGAATTCCCATCGCAACCAAGAAAGCTGGCTTCATCAATGGCTCACATGGGTTGCTCATTTGAACCAATTTATGGTAAGCTGGCCCCATCAGCCACAACATATGAAGGGTCGCAGATACTTGGAGGTACTTCCAAATAGCATTACAACCATGCCAAGGAAACTAGATGTTGCCCCAATAAAGGCCTGGCGTCGCCCAACACTTGGCACAAATTTGGGGGCTGATATCTCCACATCCACAAAATTCTTGTTTGTGGCCGAGGGGGAAAGTGCGTTGGAACAAAATTAG

Coding sequence (CDS)

ATGTTTCTACATGGAATGGTCAAACCTCCTGTTGGATGGTTGAATCCAAACTCTTCTTCAGCCCTACTGAGCAAATTTACAAATGAAGGATGGTTCAAATGCGGGTATTGTTCAAATAAATGCACATGGACCTACTTGCATTTCAACTTGGATTTGACTCGAGACTCGCTTCATAGAGCACGATATCCTCTTCAGCTTGGCCACTTCCTGGCCCCAGCCTCGGATCCACTTAGCTCCATATTGCAGGACTTTCGTCAAAGCAGTCGCTCACCGAGCACCTCGCCAACAAAAATTAAGTTCATTTTTCCATATGGAAGTATGTTAAGATTTGCAGTCACAGCTCCAAATTCATTGGCTCAGGGAATCGTCAAACCTCCAGTTGGTTGGCTGAATCCAAACTCTTCTTCAGCCCTATCGAGCAAAAACAGACTGCATCTTGAGAATTTGCTTAGCAGCACCAAGGAGTATCGAAAGCAAACGAATTCCCATCGCAACCAAGAAAGCTGGCTTCATCAATGGCTCACATGGGTTGCTCATTTGAACCAATTTATGGTAAGCTGGCCCCATCAGCCACAACATATGAAGGGTCGCAGATACTTGGAGGTACTTCCAAATAGCATTACAACCATGCCAAGGAAACTAGATGTTGCCCCAATAAAGGCCTGGCGTCGCCCAACACTTGGCACAAATTTGGGGGCTGATATCTCCACATCCACAAAATTCTTGTTTGTGGCCGAGGGGGAAAGTGCGTTGGAACAAAATTAG

Protein sequence

MFLHGMVKPPVGWLNPNSSSALLSKFTNEGWFKCGYCSNKCTWTYLHFNLDLTRDSLHRARYPLQLGHFLAPASDPLSSILQDFRQSSRSPSTSPTKIKFIFPYGSMLRFAVTAPNSLAQGIVKPPVGWLNPNSSSALSSKNRLHLENLLSSTKEYRKQTNSHRNQESWLHQWLTWVAHLNQFMVSWPHQPQHMKGRRYLEVLPNSITTMPRKLDVAPIKAWRRPTLGTNLGADISTSTKFLFVAEGESALEQN
Homology
[Close]
BLAST of CmoCh20G007990 vs. ExPASy TrEMBL
Match: A0A7J6GGK7 (Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006667 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 5   GMVKPPVGWLNPNSSSALLSKFTNEGWFKCGYCSN 40
           G+V+PPVGW NPNSSSA  +KF N+GWFK  + SN
Sbjct: 109 GIVRPPVGWSNPNSSSARFNKFWNKGWFKYSFQSN 143

[Close]
BLAST of CmoCh20G007990 vs. NCBI nr
Match: KAG7010876.1 (hypothetical protein SDJN02_27674, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-48
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 42  TWTYLHFNLDLTRDSLHRARYPLQLGHFLAPASDPLSSILQDFRQSSRSPSTSPTKIKFI 101
           TWTYLHFNLDLTRDSLHRARYPLQLGHFLAPASDPLSSILQDFRQSSRSPSTSPTKIKFI
Sbjct: 35  TWTYLHFNLDLTRDSLHRARYPLQLGHFLAPASDPLSSILQDFRQSSRSPSTSPTKIKFI 94

Query: 102 FPYGSMLRFAVTAPNSLAQGIVKPPVGWLNPNSSSALSSKN 143
           FPYGSMLRFAVTAPNSLAQGIVKPPVGWLNPNSSSALSSK+
Sbjct: 95  FPYGSMLRFAVTAPNSLAQGIVKPPVGWLNPNSSSALSSKS 135

[Close]
BLAST of CmoCh20G007990 vs. NCBI nr
Match: KAG6571061.1 (hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-15
Identity = 52/103 (50.49%), Postives = 53/103 (51.46%), Query Frame = 0 

Query: 3   LHGMVKPPVGWLNPNSSSALLSKFTNEGW------------------------------- 62
           L  MV PPVGWLNPNSSSALLSK  NEGW                               
Sbjct: 47  LQEMVNPPVGWLNPNSSSALLSKSKNEGWNITNEFIEGVFFVRNCEAPPEDDGNQTLLLR 106

Query: 63  --FKCGYCSNKCTWTYLHFNLDLTRDSLHRARYPLQLGHFLAP 73
                G      TWTYLHFNLDLTRDSLHRARYPLQL   L+P
Sbjct: 107 GLAVAGMMGGLSTWTYLHFNLDLTRDSLHRARYPLQLPIHLSP 149

[Close]
BLAST of CmoCh20G007990 vs. NCBI nr
Match: KAF4382035.1 (hypothetical protein G4B88_006667 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-04
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 5   GMVKPPVGWLNPNSSSALLSKFTNEGWFKCGYCSN 40
           G+V+PPVGW NPNSSSA  +KF N+GWFK  + SN
Sbjct: 109 GIVRPPVGWSNPNSSSARFNKFWNKGWFKYSFQSN 143

The following BLAST results are available for this feature:
BLAST of CmoCh20G007990 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G007990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6GGK73.0e-0465.71Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa O... [more]
BLAST of CmoCh20G007990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010876.11.1e-4899.01hypothetical protein SDJN02_27674, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6571061.15.9e-1550.49hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF4382035.16.1e-0465.71hypothetical protein G4B88_006667 [Cannabis sativa][more]
BLAST of CmoCh20G007990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007990.1CmoCh20G007990.1mRNA