CmoCh20G007880 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G007880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR21-like
LocationCmo_Chr20: 3918934 .. 3921205 (+)
RNA-Seq ExpressionCmoCh20G007880
SyntenyCmoCh20G007880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCAGACTACCTTCACTTCTCCTCAATGCCAAGCAAATTGTCAAAATGCAGACCGTTTCTTCTAGAAATCAATGTGGCGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATCGAAAGGAAGCGGTTTGTGGTTCCAATATCATACTTGAACCATCCGTCTTTTTCAGCTTTGCTCAAGACTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGATTGACAATTCCTTGCAGAGAAGAGGTGTTCATCAATCTCACATCCAGTCTGCAAACTTCCTGAAAGAAGGAAGAAAGACAATCCAGCACACAATTTTGCCACATTCTCTCCATTTTTTCCCCATAGTTAAGAGTAGAAATCATTGTATAGTTAGTTTCAACGTGTTAATGATTGGGTAGCTGAAAGGTGATAACACATTGCCTATGTACCTGAACATCATTTACACAACTTACAATCACAGATCTGTAAACATGGAAATACAAATACTTAGTCACATTTCTTACTTAAAAAGGACTGCCCTCCTCCATGAACTTTAATTCATCTGAATTCTTCATGTTTTTCCTTTCCATGTTCTTGAAACATTATTTGGAAATATCTGGGCCCAAAACCTGTTCCCTGATGGTGCTCATAAGAGATTAAACTACTGAGTGTTTGTAATAATCAGAATATTAGAAACGTTCTCACTGAAATGGCATCAGAATTATCCTATATTGGTTATTGTTGAGCTCAAAATTCTCATTCACTAGGAAGTTCTTATTTTCGTGCATCTGAAAATTCACTTGCATGAAACTCAAAATTTTCATCATTCAAACCCAAAACCCATAGCCATATGCATCCATTCAATATTTATTGATAACATCCATAGCTTTACTTCTTTATATAAATAGATATGAAAATTTGTATTCTTCTTATATAATTTGGCTCTTGTGGATATCTAAAGAAATTCAGACGAAACTTCTATAAAGCCTTTTCAATTGAATACAATCTTTCTCGATAAAGCTGTTTTCTCTAACTGGACCTTCTCTTATAAGATGAATATTTTTTACCATATTTGGTGTACATAGATATTTTCCAAACAGACTGATAAGTGTTAGCGTAGCAATCCAGTGGTGAAGTATTGATACAACTAAATTTATCATAATCTATCAGCTTAAACTTTTGGGTTGATCGGCCATTTAACATATTTTTTCTGGTATGTTCTTTATATTTATTCGTTCGTTGCCATTTTTCTCTCGCACTGTAGGTTACATTAATCCTAAAACTACTTGGACTAGTGAGATTATGAAGCTGAACCCTCTTCAGTTATGTTAAAGCAGTGAGAGAAAAACAAGTAACTAATAAAAATTGGAATGAATGAGCTGATGACACAATTTTTTTGTAAGAGAATAATGTAATTCCCATTTCTCAAACAACCAAGTCACTGTACAGTATTATCTTACTCTACTTCCTAAATCTGGGGGTGGCAAAACTGTGATCAAGAACATTTCCTTTTTGTTCTTTCAACTTTCATGATCTGTGCAGCCTAGCAGCAAGATTTAAGAAAGCATCTTCTCTGCATGGAATCATCAAGCCGCCCACTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTAAGAAGATCTACAAAAGAAGGATGCTTCAAGTATGATATAGGTACCACAAATCTCTTCCTTTGAATCTCTCCCACATAGACTACAATGTGGCCTTTGGGAACATTGGATTGATTTCTTGCAGATATAGCTTGCATTTTCAGAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGATTCCCATATCGGATATTTCCTCGAAACAAGAGAAAGGTACTGACTTTGAATGGTGTTCTGGTTGATTCTGAATTTGATGTAGGAAATAGAGTACTTGTTGGATGAGAATGGCTTTATTTCTTATGTATATTTATAAACTAGGAACTGGAGAGGAGAACAAAAAGAGTATACTTCGAGGGCCTACTTCTCCAAAGGCTCACATGGGTTTGCTCTATCGATTAGAATTTTCTTTCATTTCCTCGTTGGTCCCACTTTTTCCAATAACAAGTGGTCAAAGAAAACTTCACCAAGTTCGTCATTATCTCTTGGAATATAAGTGGCAACATACCATGTGATACTCCCAATCCTCATTAAGTGCTTCCATTAATGGACCTATTGCAGTGGCTGAGAGTACATTGGTGGTGATAGGAGCTGTGAGTCAAATGAAATCTGAGCTACTTCCCTCACCTACAAGCTGGGTTCATTGA

mRNA sequence

ATGGGAATCAGACTACCTTCACTTCTCCTCAATGCCAAGCAAATTGTCAAAATGCAGACCGTTTCTTCTAGAAATCAATGTGGCGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATCGAAAGGAAGCGGTTTGTGGTTCCAATATCATACTTGAACCATCCGTCTTTTTCAGCTTTGCTCAAGACTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGATTGACAATTCCTTGCAGAGAAGAGGTCCTAGCAGCAAGATTTAAGAAAGCATCTTCTCTGCATGGAATCATCAAGCCGCCCACTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTAAGAAGATCTACAAAAGAAGGATGCTTCAAGTATGATATAGATATAGCTTGCATTTTCAGAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGATTCCCATATCGGATATTTCCTCGAAACAAGAGAAAGGAACTGGAGAGGAGAACAAAAAGAGTATACTTCGAGGGCCTACTTCTCCAAAGGCTCACATGGTGGCTGAGAGTACATTGGTGGTGATAGGAGCTGTGAGTCAAATGAAATCTGAGCTACTTCCCTCACCTACAAGCTGGGTTCATTGA

Coding sequence (CDS)

ATGGGAATCAGACTACCTTCACTTCTCCTCAATGCCAAGCAAATTGTCAAAATGCAGACCGTTTCTTCTAGAAATCAATGTGGCGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATCGAAAGGAAGCGGTTTGTGGTTCCAATATCATACTTGAACCATCCGTCTTTTTCAGCTTTGCTCAAGACTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGATTGACAATTCCTTGCAGAGAAGAGGTCCTAGCAGCAAGATTTAAGAAAGCATCTTCTCTGCATGGAATCATCAAGCCGCCCACTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTAAGAAGATCTACAAAAGAAGGATGCTTCAAGTATGATATAGATATAGCTTGCATTTTCAGAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGATTCCCATATCGGATATTTCCTCGAAACAAGAGAAAGGAACTGGAGAGGAGAACAAAAAGAGTATACTTCGAGGGCCTACTTCTCCAAAGGCTCACATGGTGGCTGAGAGTACATTGGTGGTGATAGGAGCTGTGAGTCAAATGAAATCTGAGCTACTTCCCTCACCTACAAGCTGGGTTCATTGA

Protein sequence

MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKTAEEEFGFKHPTGGLTIPCREEVLAARFKKASSLHGIIKPPTGWQNPNSSSDLLRRSTKEGCFKYDIDIACIFRICLALRRIDGKRIPISDISSKQEKGTGEENKKSILRGPTSPKAHMVAESTLVVIGAVSQMKSELLPSPTSWVH
Homology
[Close]
BLAST of CmoCh20G007880 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 0 

Query: 9  LLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKTAEEE 68
          LL AK+I+   T ++      PKG +AVYVG+ ++KR++VPISYLN PSF ALL  +EEE
Sbjct: 7  LLGAKKILSRSTTAA---SAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCREEV---LAARFKK 94
          FGF HP GGLTIPC E+    + +RF++
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRFQR 91

[Close]
BLAST of CmoCh20G007880 vs. ExPASy Swiss-Prot
Match: Q9FJF9 (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-18
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 9  LLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKTAEEE 68
          LL AK+I+   T S+      PKG +AVYVG+ ++KR++VP+SYL+ PSF ALL  +EEE
Sbjct: 7  LLGAKKILSRSTASA-----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCREE 86
          FGF HP GGLTIPC E+
Sbjct: 67 FGFDHPMGGLTIPCPED 78

[Close]
BLAST of CmoCh20G007880 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 9  LLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKTAEEE 68
          LL AK+I+   T +       PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEE
Sbjct: 7  LLGAKKILSRSTGAG---SAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCREE 86
          FGF HP GGLTIPC E+
Sbjct: 67 FGFDHPMGGLTIPCPED 80

[Close]
BLAST of CmoCh20G007880 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-18
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 9  LLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKTAEEE 68
          LL AK+I+   T +       PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +E+E
Sbjct: 7  LLGAKKILSRSTAA---VSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDE 66

Query: 69 FGFKHPTGGLTIPCREE 86
          FGF HP GGLTIPC E+
Sbjct: 67 FGFDHPMGGLTIPCHED 80

[Close]
BLAST of CmoCh20G007880 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-18
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 9  LLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKTAEEE 68
          LL AK+I+   T +       PKG +AVYVG+ ++KR++VP+SYL+ PSF ALL  +EEE
Sbjct: 7  LLGAKKILSRSTAAG---SAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCREE 86
          FGF HP GGLTIPC E+
Sbjct: 67 FGFAHPMGGLTIPCPED 80

[Close]
BLAST of CmoCh20G007880 vs. ExPASy TrEMBL
Match: A0A6J1FVI6 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448837 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLKTAEEEFGFKHPTGGLTIPCREEV
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 86

[Close]
BLAST of CmoCh20G007880 vs. ExPASy TrEMBL
Match: A0A6J1FVH4 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448819 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1   MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
           MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGD ERKRFVVPISYLNHPSFSA
Sbjct: 40  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKRFVVPISYLNHPSFSA 99

Query: 61  LLKTAEEEFGFKHPTGGLTIPCREEV 87
           LLKTAEEEFGFKHPTGGLTIPCRE+V
Sbjct: 100 LLKTAEEEFGFKHPTGGLTIPCREDV 125

[Close]
BLAST of CmoCh20G007880 vs. ExPASy TrEMBL
Match: A0A6J1JGW3 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484395 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 4.7e-40
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLLLNAKQ+VKMQTV SRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQVVKMQTVPSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLKTAEEEFGFKHPTGGLTIPCRE+V
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDV 86

[Close]
BLAST of CmoCh20G007880 vs. ExPASy TrEMBL
Match: A0A0A0LM71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258780 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLLLNAKQ+ KM TVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLK+AEEEFGFKHPTGGLTIPCRE+V
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDV 86

[Close]
BLAST of CmoCh20G007880 vs. ExPASy TrEMBL
Match: A0A5D3BMR1 (Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001790 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.6e-38
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLL NAKQ+ KM TVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSA
Sbjct: 1  MGIRLPSLLFNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLK+AEEEFGFKHPTGGLTIPCRE+V
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDV 86

[Close]
BLAST of CmoCh20G007880 vs. NCBI nr
Match: XP_022944372.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata])

HSP 1 Score: 177.9 bits (450), Expect = 8.8e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLKTAEEEFGFKHPTGGLTIPCREEV
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 86

[Close]
BLAST of CmoCh20G007880 vs. NCBI nr
Match: KAG6571049.1 (Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 7.5e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGD ERKRFVVPISYLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKRFVVPISYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLKTAEEEFGFKHPTGGLTIPCRE+V
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDV 86

[Close]
BLAST of CmoCh20G007880 vs. NCBI nr
Match: XP_022944352.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata])

HSP 1 Score: 174.9 bits (442), Expect = 7.5e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1   MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
           MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGD ERKRFVVPISYLNHPSFSA
Sbjct: 40  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKRFVVPISYLNHPSFSA 99

Query: 61  LLKTAEEEFGFKHPTGGLTIPCREEV 87
           LLKTAEEEFGFKHPTGGLTIPCRE+V
Sbjct: 100 LLKTAEEEFGFKHPTGGLTIPCREDV 125

[Close]
BLAST of CmoCh20G007880 vs. NCBI nr
Match: XP_022986729.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-40
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
          MGIRLPSLLLNAKQ+VKMQTV SRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQVVKMQTVPSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60

Query: 61 LLKTAEEEFGFKHPTGGLTIPCREEV 87
          LLKTAEEEFGFKHPTGGLTIPCRE+V
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDV 86

[Close]
BLAST of CmoCh20G007880 vs. NCBI nr
Match: XP_023512604.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-39
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1   MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60
           MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGD ERKRFVVPISYLNHPSFSA
Sbjct: 40  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDNERKRFVVPISYLNHPSFSA 99

Query: 61  LLKTAEEEFGFKHPTGGLTIPCREEV 87
           LLKTAEEEFGFKHP GGLTIPCRE+V
Sbjct: 100 LLKTAEEEFGFKHPPGGLTIPCREDV 125

[Close]
BLAST of CmoCh20G007880 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-24
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVK----MQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHP 60
          M IR+P +L ++KQI++    + + SS +   VPKG++AVYVG+   KRFVVP+SYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFSALLKTAEEEFGFKHPTGGLTIPCREEV---LAARF 92
          SF  LL+ AEEEFGF HP GGLTIPC EE+   LA+RF
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRF 98

[Close]
BLAST of CmoCh20G007880 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-24
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCG------VPKGHIAVYVG---DIERKRFVVPIS 60
          MG+   ++    KQI+K+ ++++RN+        VPKGH+AVYVG   ++E+KRFVVPIS
Sbjct: 1  MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61 YLNHPSFSALLKTAEEEFGFKHPTGGLTIPCREEV 87
          +LNHPSF   L  AEEEFGF HP GGLTIPCREEV
Sbjct: 61 FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEV 95

[Close]
BLAST of CmoCh20G007880 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGD-IERKRFVVPISYLNHPSFS 60
          M IR+  +L ++KQ++K  + SS N   +PKGH+AVYVG+ ++++RFVVP++YL+HP F 
Sbjct: 1  MAIRISRVLQSSKQLLKSLSHSS-NNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 ALLKTAEEEFGFKHPTGGLTIPCREEV---LAARFKKAS 96
           LL+ AEEEFGF HP GGLTIPC E++   LA+R   +S
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTSS 98

[Close]
BLAST of CmoCh20G007880 vs. TAIR 10
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-23
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGD--IERKRFVVPISYLNHPSF 60
          M IRL S ++N+KQ       S + Q  VPKGH+AVYVG+    +KRFVVPISYLNHPSF
Sbjct: 1  MAIRL-SRVINSKQ-------SQKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSF 60

Query: 61 SALLKTAEEEFGFKHPTGGLTIPCREE 86
            LL  AEEEFGF HP GGLTIPCREE
Sbjct: 61 QGLLSRAEEEFGFNHPIGGLTIPCREE 79

[Close]
BLAST of CmoCh20G007880 vs. TAIR 10
Match: AT4G34790.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-22
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 0 

Query: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCG-----------VPKGHIAVYVGD-IERKRFVV 60
          MG+ + S+L NAKQI K Q++ ++N              VPKGH+AVYVG+ +E+KRFVV
Sbjct: 1  MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSGLVPKGHVAVYVGEQMEKKRFVV 60

Query: 61 PISYLNHPSFSALLKTAEEEFGFKHPTGGLTIPCREE 86
          PISYLNHP F   L  AEEE GF H  GGLTIPCREE
Sbjct: 61 PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREE 96

The following BLAST results are available for this feature:
BLAST of CmoCh20G007880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJG01.5e-1953.41Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S... [more]
Q9FJF91.7e-1857.14Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 S... [more]
Q9FK621.7e-1857.14Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S... [more]
Q9FJF72.2e-1855.84Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S... [more]
Q9FJG13.8e-1855.84Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S... [more]
BLAST of CmoCh20G007880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FVI64.3e-41100.00auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A6J1FVH43.6e-4097.67auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A6J1JGW34.7e-4096.51auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484395... [more]
A0A0A0LM718.9e-3993.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258780 PE=3 SV=1[more]
A0A5D3BMR12.6e-3891.86Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CmoCh20G007880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944372.18.8e-41100.00auxin-responsive protein SAUR21-like [Cucurbita moschata][more]
KAG6571049.17.5e-4097.67Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022944352.17.5e-4097.67auxin-responsive protein SAUR21-like [Cucurbita moschata][more]
XP_022986729.19.8e-4096.51auxin-responsive protein SAUR21-like [Cucurbita maxima][more]
XP_023512604.16.3e-3996.51auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh20G007880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G38840.12.1e-2456.12SAUR-like auxin-responsive protein family [more]
AT4G34810.16.1e-2456.84SAUR-like auxin-responsive protein family [more]
AT2G21210.11.8e-2352.53SAUR-like auxin-responsive protein family [more]
AT4G34800.14.0e-2364.37SAUR-like auxin-responsive protein family [more]
AT4G34790.19.8e-2256.70SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 13..87
e-value: 3.1E-24
score: 84.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..176
NoneNo IPR availablePANTHERPTHR31929SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATEDcoord: 1..88
NoneNo IPR availablePANTHERPTHR31929:SF51AUXIN-RESPONSIVE PROTEIN SAUR22-LIKEcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007880.1CmoCh20G007880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin