CmoCh20G007860 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGGTTTGACAATTCTTTTTAGAGAAGATGCCTTTATCAACCTCATTTCTAGGCTGCATACTTCTTGAAAGAGTGAAGAAAAACAAATTTCCACACAGTTTTGCAGAATTTCTTTCATTGTTTTCTTCTTTTTGCCACAGTTGAGGAGTAGAATATCAATGCATAGTTAGTTTCTATATGTATGAAGAAGCAAAAGTTGATTCAATATCAGTGTACGATTTATAATTGCAGAGATGGAAATATAGAAATGGATTCACATTTTCTTATTGAAATACTGCTTGCTTCAGCCTCTGAATTTTGATCTATTTAAACTCCATCTTTTGACTCTTTCCTTGATGTTTTTGTGTTATGATACTTGGACATATATGTGCACTAATTTTTTTTCACAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGGTATCTTATTTACAAAGAAGTGTTAGATCACCTTGCACATGATGGAAACTAAACTCTTTCTCGACATGTTTGAGAACTCTTGGAATGAAGAACGGCTGAGATTCGATACTGTGACCATAGGGGTTTTCTTTCGATCTCTCCCATCTAAACTGCTAAATAATCGTCTAGAACATCTAGTTGGTTCAGGTGAAACGTATTGCATCTCAAGGATTTTCTTGCTATGCAGAATTAGAAAGTTAAGACCCGGTTCGATAACCATTTGAATTTTAGTTCTTATTTTGTAAAAGTAAGCTGACAAACACTACTTCTTAAGTGATTTATCATGATCTGGCAACAGTTTTTCTTAGTTCCATGGATTGCAGGTTAACCATCACAAATAAAGCAGAAAAGAAAAGGCTATATAGATATTGAAGCTAAATTGTGTTTTCTTTTGATTCACTTCTGTTGGTAAATGCACCATTACAATGCCACTCATTTACAGGCAAGAAAGGCATTCCATTCTACAACATTCTAGTATGGGTCAAAATACAATTGAGTCAGAAACAACCAGAAAAGGTTGTAAAAAATTGCAGCTTGAGCATTGCTGTTCATCCTTCAAGATACTTGCAGTCTAGAAGTGAGATCGATGAAGGCATCTTCTTTGCAAGGAATTGTTAGGCCCCCTTGAGGATGATGGAAGCCAAACTTCTCCTCTGCGTGGCTGAGCAGTTGCTGGAACGACGGGTGGTTTAGGTAAGATATTGGAACCACGAACCGCTTCCTTTGAATCTCTCCCACGTAAACTGCTACATGGCCTTTTGGAACATCCAACTGGTTTTTGGTGAAACCTGACTGCATCTTCAGAATTTGCTTGGCATGAGGAACCAAAGATAGAAATCGAATCCCCATTTTGTTGAGATGAAAGAGTGTCAAAAAGGTCAGGAGCTAACTATAAGAGGATGTAGTACTTAAAATGAGTTGAATTCGGTGTTTGAGTCTCATTTTGATGTTTATATTTATAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGGTTCATTGGTCAATTGTTTCCGTATATCTCCTGTCAACTTATAGATACTTCCACTCCATATTCTCTGTTTTGGCATTTGGTTTTGAAGTTTTCTTGATCTCTTATTTTGGATTATAAATGCACCTCAATGAAACCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA MFYISFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDIDNLEVNDHFSISMAFIQILEEFLKEVLSMLVSVAFPVALWGSDVWWLGIFEYTGSHGFAQLMKGPSIFFSHSIVSVFYTTNFSGTVTRSQGTYGSACIQTK Homology
BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 8.6e-06 Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJF9 (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05 Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.9e-05 Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05 Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05 Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A6J1CWI4 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015447 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08 Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A6J1KXM0 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682 PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07 Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A5D3BMR1 (Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001790 PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A0A0LM71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258780 PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A6J1CYI4 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015455 PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_022146165.1 (auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146166.1 auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146167.1 auxin-responsive protein SAUR21-like [Momordica charantia]) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07 Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_023007087.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima]) HSP 1 Score: 66.2 bits (160), Expect = 2.6e-07 Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_023533283.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533284.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533285.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 65.9 bits (159), Expect = 3.4e-07 Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 0
BLAST of CmoCh20G007860 vs. NCBI nr
Match: KGN61882.1 (hypothetical protein Csa_006681 [Cucumis sativus]) HSP 1 Score: 65.1 bits (157), Expect = 5.7e-07 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_022146176.1 (auxin-responsive protein SAUR21-like [Momordica charantia]) HSP 1 Score: 65.1 bits (157), Expect = 5.7e-07 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 55.5 bits (132), Expect = 4.2e-08 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G34770.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07 Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G13790.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07 Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07 Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 52.0 bits (123), Expect = 4.7e-07 Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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