CmoCh20G007860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G007860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR21-like
LocationCmo_Chr20: 3916788 .. 3918746 (+)
RNA-Seq ExpressionCmoCh20G007860
SyntenyCmoCh20G007860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGGTTTGACAATTCTTTTTAGAGAAGATGCCTTTATCAACCTCATTTCTAGGCTGCATACTTCTTGAAAGAGTGAAGAAAAACAAATTTCCACACAGTTTTGCAGAATTTCTTTCATTGTTTTCTTCTTTTTGCCACAGTTGAGGAGTAGAATATCAATGCATAGTTAGTTTCTATATGTATGAAGAAGCAAAAGTTGATTCAATATCAGTGTACGATTTATAATTGCAGAGATGGAAATATAGAAATGGATTCACATTTTCTTATTGAAATACTGCTTGCTTCAGCCTCTGAATTTTGATCTATTTAAACTCCATCTTTTGACTCTTTCCTTGATGTTTTTGTGTTATGATACTTGGACATATATGTGCACTAATTTTTTTTCACAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGGTATCTTATTTACAAAGAAGTGTTAGATCACCTTGCACATGATGGAAACTAAACTCTTTCTCGACATGTTTGAGAACTCTTGGAATGAAGAACGGCTGAGATTCGATACTGTGACCATAGGGGTTTTCTTTCGATCTCTCCCATCTAAACTGCTAAATAATCGTCTAGAACATCTAGTTGGTTCAGGTGAAACGTATTGCATCTCAAGGATTTTCTTGCTATGCAGAATTAGAAAGTTAAGACCCGGTTCGATAACCATTTGAATTTTAGTTCTTATTTTGTAAAAGTAAGCTGACAAACACTACTTCTTAAGTGATTTATCATGATCTGGCAACAGTTTTTCTTAGTTCCATGGATTGCAGGTTAACCATCACAAATAAAGCAGAAAAGAAAAGGCTATATAGATATTGAAGCTAAATTGTGTTTTCTTTTGATTCACTTCTGTTGGTAAATGCACCATTACAATGCCACTCATTTACAGGCAAGAAAGGCATTCCATTCTACAACATTCTAGTATGGGTCAAAATACAATTGAGTCAGAAACAACCAGAAAAGGTTGTAAAAAATTGCAGCTTGAGCATTGCTGTTCATCCTTCAAGATACTTGCAGTCTAGAAGTGAGATCGATGAAGGCATCTTCTTTGCAAGGAATTGTTAGGCCCCCTTGAGGATGATGGAAGCCAAACTTCTCCTCTGCGTGGCTGAGCAGTTGCTGGAACGACGGGTGGTTTAGGTAAGATATTGGAACCACGAACCGCTTCCTTTGAATCTCTCCCACGTAAACTGCTACATGGCCTTTTGGAACATCCAACTGGTTTTTGGTGAAACCTGACTGCATCTTCAGAATTTGCTTGGCATGAGGAACCAAAGATAGAAATCGAATCCCCATTTTGTTGAGATGAAAGAGTGTCAAAAAGGTCAGGAGCTAACTATAAGAGGATGTAGTACTTAAAATGAGTTGAATTCGGTGTTTGAGTCTCATTTTGATGTTTATATTTATAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGGTTCATTGGTCAATTGTTTCCGTATATCTCCTGTCAACTTATAGATACTTCCACTCCATATTCTCTGTTTTGGCATTTGGTTTTGAAGTTTTCTTGATCTCTTATTTTGGATTATAAATGCACCTCAATGAAACCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA

mRNA sequence

ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA

Coding sequence (CDS)

ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA

Protein sequence

MFYISFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDIDNLEVNDHFSISMAFIQILEEFLKEVLSMLVSVAFPVALWGSDVWWLGIFEYTGSHGFAQLMKGPSIFFSHSIVSVFYTTNFSGTVTRSQGTYGSACIQTK
Homology
BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-06
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP SYLS PSF ALL  +++EFGF HP G +
Sbjct: 38 KKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGL 73

BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJF9 (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP SYLS PSF ALL  +++EFGF HP G +
Sbjct: 36 KKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGL 71

BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.9e-05
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP SYL+ PSF ALL  +++EFGF HP G +
Sbjct: 38 KKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP SYL+ PSF ALL  +++EFGF HP G +
Sbjct: 38 KKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGL 73

BLAST of CmoCh20G007860 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP SYL+ PSF ALL  +++EFGF HP G +
Sbjct: 38 KKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A6J1CWI4 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015447 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSFVALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPISYLNHPSFVALLKSAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A6J1KXM0 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSFVALLK+A++EFGF+HPTG +
Sbjct: 43 RKRFVVPISYLNHPSFVALLKTAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A5D3BMR1 (Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001790 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A0A0LM71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258780 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. ExPASy TrEMBL
Match: A0A6J1CYI4 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015455 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 42 RKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGL 77

BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_022146165.1 (auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146166.1 auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146167.1 auxin-responsive protein SAUR21-like [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSFVALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPISYLNHPSFVALLKSAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_023007087.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-07
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSFVALLK+A++EFGF+HPTG +
Sbjct: 43 RKRFVVPISYLNHPSFVALLKTAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_023533283.1 (auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533284.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533285.1 auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-07
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTG 42
          RKRFVVP SYL+HPSFVALLK+A++EFGF+HPTG
Sbjct: 43 RKRFVVPISYLNHPSFVALLKTAEEEFGFKHPTG 76

BLAST of CmoCh20G007860 vs. NCBI nr
Match: KGN61882.1 (hypothetical protein Csa_006681 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 78

BLAST of CmoCh20G007860 vs. NCBI nr
Match: XP_022146176.1 (auxin-responsive protein SAUR21-like [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 42 RKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGL 77

BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-08
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KRFVVP SYL+HPSF  LL  A++EFGF HP G +
Sbjct: 37 KKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGL 72

BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G34770.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 5  SFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDIDNLEVNDHFS 54
          ++ RKRFV+P SYL+HP F  LL  A++EFGF HP G +      D+F+
Sbjct: 47 TYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFT 95

BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G13790.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP  YL+ PSF ALL+ A++EFGF HPTG +
Sbjct: 40 KKRYLVPVCYLNKPSFQALLRKAEEEFGFNHPTGGL 75

BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          ++RFVVP +YLSHP F  LL+ A++EFGF HP G +
Sbjct: 43 KRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGL 78

BLAST of CmoCh20G007860 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.0 bits (123), Expect = 4.7e-07
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0

Query: 4  ISFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          I   +KRFVVP S+L+HPSF   L  A++EFGF HP G +
Sbjct: 48 IEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FJG18.6e-0658.33Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S... [more]
Q9FJF91.1e-0558.33Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 S... [more]
Q9FK621.9e-0555.56Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S... [more]
Q9FJG02.5e-0555.56Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S... [more]
Q9FJF62.5e-0555.56Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S... [more]
Match NameE-valueIdentityDescription
A0A6J1CWI45.6e-0880.56auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1KXM01.2e-0777.78auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682... [more]
A0A5D3BMR12.8e-0777.78Auxin-responsive protein SAUR21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0LM712.8e-0777.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258780 PE=3 SV=1[more]
A0A6J1CYI42.8e-0777.78auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
XP_022146165.11.2e-0780.56auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146166.1 auxin... [more]
XP_023007087.12.6e-0777.78auxin-responsive protein SAUR21-like [Cucurbita maxima][more]
XP_023533283.13.4e-0782.35auxin-responsive protein SAUR21-like [Cucurbita pepo subsp. pepo] >XP_023533284.... [more]
KGN61882.15.7e-0777.78hypothetical protein Csa_006681 [Cucumis sativus][more]
XP_022146176.15.7e-0777.78auxin-responsive protein SAUR21-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT4G34800.14.2e-0863.89SAUR-like auxin-responsive protein family [more]
AT4G34770.11.2e-0748.98SAUR-like auxin-responsive protein family [more]
AT4G13790.12.1e-0758.33SAUR-like auxin-responsive protein family [more]
AT2G21210.12.7e-0758.33SAUR-like auxin-responsive protein family [more]
AT4G34810.14.7e-0755.00SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 8..39
e-value: 5.2E-10
score: 39.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007860.1CmoCh20G007860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin