CmoCh20G007410 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G007410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDUF1279 domain-containing protein
LocationCmo_Chr20: 3707078 .. 3707515 (-)
RNA-Seq ExpressionCmoCh20G007410
SyntenyCmoCh20G007410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTCAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

mRNA sequence

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTCAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTCAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Protein sequence

MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGLTPPIARMLARRGIMRSG
Homology
BLAST of CmoCh20G007410 vs. ExPASy TrEMBL
Match: A0A6J1FU56 (uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC111448454 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 146
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

BLAST of CmoCh20G007410 vs. ExPASy TrEMBL
Match: A0A6J1JD52 (uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.1e-67
Identity = 143/152 (94.08%), Postives = 144/152 (94.74%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KDQSQTSP       DDGLVIEESPAS+ QSTVAQEPRTRNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIRIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. ExPASy TrEMBL
Match: A0A6J1I2F7 (uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.6e-61
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 132/152 (86.84%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. ExPASy TrEMBL
Match: A0A6J1CXM4 (uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015379 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 131/152 (86.18%), Postives = 135/152 (88.82%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KDQ QT P       DDG VIEE P S+ QST  QEPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIRIPITI LTPPI+R+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. NCBI nr
Match: XP_022943842.1 (uncharacterized protein LOC111448454 [Cucurbita moschata] >KAG6571014.1 hypothetical protein SDJN03_29929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010845.1 hypothetical protein SDJN02_27641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 146
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

BLAST of CmoCh20G007410 vs. NCBI nr
Match: XP_023513086.1 (uncharacterized protein LOC111777632 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 6.9e-69
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTG ALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 146
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

BLAST of CmoCh20G007410 vs. NCBI nr
Match: XP_022986110.1 (uncharacterized protein LOC111483951 [Cucurbita maxima])

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 143/152 (94.08%), Postives = 144/152 (94.74%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KDQSQTSP       DDGLVIEESPAS+ QSTVAQEPRTRNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIRIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. NCBI nr
Match: XP_022971121.1 (uncharacterized protein LOC111469888 [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 5.3e-61
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 9.1e-61
Identity = 132/152 (86.84%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 146
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

BLAST of CmoCh20G007410 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 0

Query: 9   RFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSP 68
           R +E++KKYGKVA+GVHFSVS  SI+G Y+AIKNNVDVESLL+K  +  FSSK+    S 
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENPNPSL 63

Query: 69  DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGL 128
           D  L  + S  SD            N+T +LA S GGALALAVLCNKAL PIR+PIT+ L
Sbjct: 64  DLKLEEQGSVTSD------------NKTKQLAKSAGGALALAVLCNKALFPIRVPITMAL 123

Query: 129 TPPIARMLARRGIMRSG 146
           TPPIAR L +R I+++G
Sbjct: 124 TPPIARFLRQRKILKTG 128

BLAST of CmoCh20G007410 vs. TAIR 10
Match: AT2G27290.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 41.2 bits (95), Expect = 8.3e-04
Identity = 37/129 (28.68%), Postives = 54/129 (41.86%), Query Frame = 0

Query: 11  RELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDD 70
           +ELL KYG   +    ++S  S +  YV + + VDV++LL K+   G S+          
Sbjct: 104 KELLAKYGGAYLATSITLSLISFSLCYVLVTSGVDVQALLLKV---GIST---------- 163

Query: 71  GLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGLTP 130
                                  N T E      GA ALA   +KA  PIR P T+ LTP
Sbjct: 164 -----------------------NETGEKV----GAFALAYAAHKAASPIRFPPTVALTP 192

Query: 131 PIARMLARR 140
            +A  + ++
Sbjct: 224 IVANWIGKK 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FU566.7e-70100.00uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC1114484... [more]
A0A6J1JD529.1e-6794.08uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951... [more]
A0A6J1I2F72.6e-6187.50uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888... [more]
A0A6J1G6W34.4e-6186.84uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513... [more]
A0A6J1CXM42.2e-6086.18uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
XP_022943842.11.4e-69100.00uncharacterized protein LOC111448454 [Cucurbita moschata] >KAG6571014.1 hypothet... [more]
XP_023513086.16.9e-6999.31uncharacterized protein LOC111777632 [Cucurbita pepo subsp. pepo][more]
XP_022986110.11.9e-6694.08uncharacterized protein LOC111483951 [Cucurbita maxima][more]
XP_022971121.15.3e-6187.50uncharacterized protein LOC111469888 [Cucurbita maxima][more]
XP_022947464.19.1e-6186.84uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet... [more]
Match NameE-valueIdentityDescription
AT2G20940.11.7e-3357.66Protein of unknown function (DUF1279) [more]
AT2G27290.18.3e-0428.68Protein of unknown function (DUF1279) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009688Protein FAM210A/B-like domainPFAMPF06916DUF1279coord: 9..130
e-value: 4.7E-26
score: 91.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..93
NoneNo IPR availablePANTHERPTHR21377:SF0PROTEIN FAM210B, MITOCHONDRIALcoord: 8..143
NoneNo IPR availablePANTHERPTHR21377UNCHARACTERIZEDcoord: 8..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007410.1CmoCh20G007410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion