CmoCh20G007160 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G007160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsorcin-like
LocationCmo_Chr20: 3524137 .. 3527537 (+)
RNA-Seq ExpressionCmoCh20G007160
SyntenyCmoCh20G007160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATACGGGAATTCTGAAGGAGTGGTTCGATCGAGTTGATTCGGAGAAGTCTGGAAGCATCATAGCTCCTCAGCTTCAGGTTGATCTTCTTCTTTTTCTTATTCAAAGATTTTATCCTCTTCGTCTCAAAGTCCCGATCGTTGACAAAATTTCTGGATTCCTCCATGATCAGAATGCTCTGGCGGTTGGAAACCTCAACTTTCCTCTCTCAATTGTGCAGCAAATGATCAGGTTTCCGAAATCTCTTATTCTTATCATCTCTGTAAAGAACTTTCTGCTGATTTATTATTATTATTTTTTGGTTAGGATGTATGATTTTGATAGAAATGGAACTATGAGCTTCGAAGGCAAGTATGATAATATTTTATAGTGCGGCTTTTGTTTTCGTTTGAGAATCGGTATTTGATTTTGATGATCTCTCTGGTGTTGTGATGCATTTTTCACAGAGTTTGTAGCTCTCAACAAGTTCCTCATTAAGGTTTGTATTTTCGATGATTTTTCTATCTTATGATATTCATGAAATTATGTTCAGCTTAATCTTTTGTGAATATGAAAAACCAATTGAATCGAAGTATCTGCTCTTCCTTCGATCTTCTGATTACTTTTTAATTTCTGTTTCAGCTTCAGCAAGCCTTCTCTGACTTGGAAAGGTGAGTCGGAATTTTCTTTCGATAGTTTTGATGACTACTTGAGCCCTATCTTGCTTGACATAAGACATTTTATTAGAAAATTTTGTTGTAAAGTGCTTGGAGATTTACAAATAATTTGAAACCATTATTCGTATGCCAGAGGCAGCTTCTGCTCTATATATGGCCAGATTGCCTTCTGTCTCCGTATCTGCTGTTGGCCAAATAAATTATATACCATAAATAGAAGTAGCCAGAACTCCTAGTTGGAGCTGAAACGAACTTCAAACGTTTAGCTAATTTCTTGATGGATCTAAACTTGTCATCTCTTTGTGTGTTGTTACAGAGGTCGTGGTTATCTGGTCCCAGAGGATGTATATGAGGTGTGTACTTGGTTTTAAGTATTAACTTCTATATATCTATTAGGATCAATTTTGAAAGAATAATATTCACATTGCGTTTGCATTTAAAATTGTTTTCCTACTGAAATATCCTTTCAGGCATTGGTTAAGATTGGCTTCACGCTGGACTCTCCGGCATTTTATACTGTCTGCGAGGTAAACCATATTTCACCATTGAAATAAAGAACTATCAGTAGTTTTAGTTGGTAAATTTTGTGGTGACAAAGTTAGCATAACTTACCTTCGACCAAGAGATTTGAGGTTCGAATCCCCTTAGTTAGTATATATCGTGGTAAATTTGTGTAGGTTAAAAGCTTTAGAGATTAGTTTAGTGAAGTGATCAAGCTTAATGAAACTTGATGGTTGGAACTTATCTTTAAAACTTGATTAGCAGTCCTTGACTGCTTACTTTAGAATCAATAATGCAAATTAGTGAAATTTCCGTGCATGGGGTGTTGAATCATAAGATAATTGACGCATGAAGATACATACATTCATAAGTGGAGTGTTAACAAGCAATCCTAACGCAGGAAGACGAAGGAAGTAATATTCAGCATAAACCATTCTTTTGTAGTCTTCCATTAGAGAGCCTTCTTTTTTCATCTCTCCATTTTGTCTGTTTGGTTGGTTCCTCTCATCCTTCTAATTATCTTTTTGTAAAAGGAACTCTGCCTTGCCATTTTCTTTTCCATCTCCACAATGCTTTGTAAGTGTGATTTATTTGGTTTGCTGCTTTGTAAATGGAACCTGCCTTTTCAAAATATTTAGTTATGCAAGACATATCGAACTTGTATTTTATTTCTATATATATTTGCAGAGCTTTGATCAGAAGAAGAATGGGAGATTTCGGCTTGACGACTTCATATCTCTCTGTATATTTGTTCAATCAGCTAGGTAGGTTCACTGTTAAATTGGTCAATATCAATCTTTTTTTCGCTTATCTTCTGACGAAAAACTCCTCTTTTTTTTTTTTTGTGGGGGCTCCCATATGCTGTGTATGTATAATTTTCTTTCATTTAACCAAATCAAAAGTTTACGAACCTATTTGATATTTTCGAAGTTTAAAGACGGGTTAAATGTTCTTTAAAGTTCATGACCTATTAGATACAAATATAAAAGTAGGGACTAGATTTGTAATTTAACCTTATTCTTACTTTTTATTATGCAGCTGATTTTCCTTAGAGACGTGTTTTGAATTTTTCTAGTAGTTCTCTAGTTGGTAGAAATCTAACATTGTCTTTTGATTACTTTGAAGTTTCACTAAAAAAAAAAAATTCGGATTGGTTGCAGGAATTTGTTTAATTCCTTTGATACAGCAAAACAAGGCAGGGTGACTCTAGATCTCAACCAATTTGTCTATTGCAGTGAGTATCTGAATTCTAACTCTCGTCTTTTGCCAGCATGTTGTGAATTCATTTTCCTCGTAGTTCGGCGTTTTTATGTTATTCCCTGCCCTCACCTAACAAATTAACCACGGATTAGAGATTGGTGTTGTTATTACTAGATTTTCCCAAGTGTTTAGTGCTCTGTTTGTTTGAGTATTAAATTATAGATGTAAGAGGACATGAGGCAGAATACAATAAATTGCCATCGTTTTTTGTCATGATCTGATATATTAACCCAAGGGGTGGCCGCGCCGGCAAGGACTCGAGGCCTTTTGGTCATACCGGCCTATAAAGTCCAAAGTTTGAATCTTCAGAGGAGCTTAACACCAAAAAAACTGACCCACACAGCCATATTATTGTCAGCCTACCTAGAGATCAAACACTCCCCCTGGCATATTGGCTAGGGCGATCGCTTAGTCACCGACGTTGCTGTTGTTCGTTCCTGATGTTTGCAGATTGATATTAATTTAGTAATCGTGAGCCTACGCCTAAAGCACATCTAACTCGGAACTCAAAATATTCACTGTTCAATTTCTTGCTGTCTAATTTGAAGCACCTGTGTTCTAACTACTGATTGATTTGTTCCTTCACGTTTCCTTTCAGCTGCTAATTGCAGAATATGAAAGTGTAAATATTTTCGATGAAGAGGGGACAGCATAGCATACTGCAGAAACTGTTCGTGCAACCTGTGGATTTAGAATGGTAGGATATGAACTGTAAACTTACTTTTCTGTAGCATAATCTATCTTGCTTGTTTATCTGTTGGTTTGGATCCTTGTCTTCGATGCTGGAAAAGGCTTTATGTGATTGGAAAACTAGTAATTGAGTTCTATTCATCTACCATATAGCCCGTACGTATATTTTCTTGTAGCCATTCAGTTATATGATTAGTCAATATATTGGTTTATTTTGTTAGTTTCATATTATTATTCGTAAATACCGTTATGTAGAAATGAACTTGACGATCTAAAATGGACTCCTGTA

mRNA sequence

ATGGAGAATACGGGAATTCTGAAGGAGTGGTTCGATCGAGTTGATTCGGAGAAGTCTGGAAGCATCATAGCTCCTCAGCTTCAGGTTGATCTTCTTCTTTTTCTTATTCAAAGATTTTATCCTCTTCGTCTCAAAGTCCCGATCGTTGACAAAATTTCTGGATTCCTCCATGATCAGAATGCTCTGGCGCTTCAGCAAGCCTTCTCTGACTTGGAAAGAGGTCGTGGTTATCTGGTCCCAGAGGATGTATATGAGGCATTGGTTAAGATTGGCTTCACGCTGGACTCTCCGGCATTTTATACTGTCTGCGAGCTGCTAATTGCAGAATATGAAAGTGTAAATATTTTCGATGAAGAGGGGACAGCATAGCATACTGCAGAAACTGTTCGTGCAACCTGTGGATTTAGAATGGTAGGATATGAACTGTAAACTTACTTTTCTGTAGCATAATCTATCTTGCTTGTTTATCTGTTGGTTTGGATCCTTGTCTTCGATGCTGGAAAAGGCTTTATGTGATTGGAAAACTAGTAATTGAGTTCTATTCATCTACCATATAGCCCGTACGTATATTTTCTTGTAGCCATTCAGTTATATGATTAGTCAATATATTGGTTTATTTTGTTAGTTTCATATTATTATTCGTAAATACCGTTATGTAGAAATGAACTTGACGATCTAAAATGGACTCCTGTA

Coding sequence (CDS)

ATGGAGAATACGGGAATTCTGAAGGAGTGGTTCGATCGAGTTGATTCGGAGAAGTCTGGAAGCATCATAGCTCCTCAGCTTCAGGTTGATCTTCTTCTTTTTCTTATTCAAAGATTTTATCCTCTTCGTCTCAAAGTCCCGATCGTTGACAAAATTTCTGGATTCCTCCATGATCAGAATGCTCTGGCGCTTCAGCAAGCCTTCTCTGACTTGGAAAGAGGTCGTGGTTATCTGGTCCCAGAGGATGTATATGAGGCATTGGTTAAGATTGGCTTCACGCTGGACTCTCCGGCATTTTATACTGTCTGCGAGCTGCTAATTGCAGAATATGAAAGTGTAAATATTTTCGATGAAGAGGGGACAGCATAG

Protein sequence

MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNALALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCELLIAEYESVNIFDEEGTA
Homology
[Close]
BLAST of CmoCh20G007160 vs. ExPASy TrEMBL
Match: A0A6J1JFX0 (sorcin-like OS=Cucurbita maxima OX=3661 GN=LOC111484048 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.2e-28
Identity = 75/118 (63.56%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSIIAPQLQ  L +  +   +PL +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQNALAVGNLN--FPLSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          + LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLIKLQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. ExPASy TrEMBL
Match: A0A6J1FSK3 (sorcin-like OS=Cucurbita moschata OX=3662 GN=LOC111448408 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.2e-28
Identity = 75/118 (63.56%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSIIAPQLQ  L +  +   +PL +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQNALAVGNLN--FPLSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          + LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLIKLQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. ExPASy TrEMBL
Match: A0A0A0KAX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G118890 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 73/118 (61.86%), Postives = 81/118 (68.64%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSI APQLQ  L +  +   +P  +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSITAPQLQNALAVGNLN--FPHSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          L LQQAFSDLERGRGYLVP+DVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLLKLQQAFSDLERGRGYLVPDDVYEALVKIGFTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. ExPASy TrEMBL
Match: A0A6J1CIP5 (sorcin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011328 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGS+ APQLQ  L +  +   +PL +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSVTAPQLQKALAVGNLN--FPLSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          L LQQAFSDLERGRG+LVP DVYEALVKIG+TLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLLKLQQAFSDLERGRGFLVPNDVYEALVKIGYTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. ExPASy TrEMBL
Match: A0A6J1CGJ0 (sorcin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011328 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGS+ APQLQ  L +  +   +PL +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSVTAPQLQKALAVGNLN--FPLSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          L LQQAFSDLERGRG+LVP DVYEALVKIG+TLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLLKLQQAFSDLERGRGFLVPNDVYEALVKIGYTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. NCBI nr
Match: KAG7010818.1 (hypothetical protein SDJN02_27614 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 103/141 (73.05%), Postives = 104/141 (73.76%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSIIAPQLQVDLL+FLIQRFYPLRLKVPIVDKISGFLHDQN
Sbjct: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLVFLIQRFYPLRLKVPIVDKISGFLHDQN 60

Query: 61  ALA-------------------------------------LQQAFSDLERGRGYLVPEDV 105
           ALA                                     LQQAFSDLERGRGYLVPEDV
Sbjct: 61  ALAVGNLNFPLSIVQQMIRMYDFDRNGTMSFEGKVCSSQQLQQAFSDLERGRGYLVPEDV 120

[Close]
BLAST of CmoCh20G007160 vs. NCBI nr
Match: XP_022943751.1 (sorcin-like [Cucurbita moschata] >XP_022986228.1 sorcin-like [Cucurbita maxima] >KAG6570981.1 hypothetical protein SDJN03_29896, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 75/118 (63.56%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSIIAPQLQ  L +  +   +PL +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQNALAVGNLN--FPLSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          + LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLIKLQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. NCBI nr
Match: XP_023511846.1 (sorcin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 74/118 (62.71%), Postives = 82/118 (69.49%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSIIA QLQ  L +  +   +PL +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSIIASQLQNALAVGNLN--FPLSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          + LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLIKLQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. NCBI nr
Match: XP_004139969.1 (sorcin isoform X2 [Cucumis sativus] >KGN46663.1 hypothetical protein Csa_005521 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.1e-26
Identity = 73/118 (61.86%), Postives = 81/118 (68.64%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSI APQLQ  L +  +   +P  +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSITAPQLQNALAVGNLN--FPHSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          L LQQAFSDLERGRGYLVP+DVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLLKLQQAFSDLERGRGYLVPDDVYEALVKIGFTLDSPAFYTVCE 113

[Close]
BLAST of CmoCh20G007160 vs. NCBI nr
Match: XP_011656916.1 (sorcin isoform X1 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.1e-26
Identity = 73/118 (61.86%), Postives = 81/118 (68.64%), Query Frame = 0 

Query: 1   MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQN 60
           MENTGILKEWFDRVDSEKSGSI APQLQ  L +  +   +P  +   +   I  +  D+N
Sbjct: 1   MENTGILKEWFDRVDSEKSGSITAPQLQNALAVGNLN--FPHSI---VQQMIRMYDFDRN 60

Query: 61  A--------------LALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE 105
                          L LQQAFSDLERGRGYLVP+DVYEALVKIGFTLDSPAFYTVCE
Sbjct: 61  GTMSFEEFVALNKFLLKLQQAFSDLERGRGYLVPDDVYEALVKIGFTLDSPAFYTVCE 113

The following BLAST results are available for this feature:
BLAST of CmoCh20G007160 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G007160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JFX09.2e-2863.56sorcin-like OS=Cucurbita maxima OX=3661 GN=LOC111484048 PE=4 SV=1[more]
A0A6J1FSK39.2e-2863.56sorcin-like OS=Cucurbita moschata OX=3662 GN=LOC111448408 PE=4 SV=1[more]
A0A0A0KAX12.9e-2661.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G118890 PE=4 SV=1[more]
A0A6J1CIP55.0e-2660.17sorcin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011328 PE=4 SV=1[more]
A0A6J1CGJ05.0e-2660.17sorcin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011328 PE=4 SV=1[more]
BLAST of CmoCh20G007160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010818.12.0e-4573.05hypothetical protein SDJN02_27614 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022943751.11.9e-2763.56sorcin-like [Cucurbita moschata] >XP_022986228.1 sorcin-like [Cucurbita maxima] ... [more]
XP_023511846.11.6e-2662.71sorcin-like [Cucurbita pepo subsp. pepo][more]
XP_004139969.16.1e-2661.86sorcin isoform X2 [Cucumis sativus] >KGN46663.1 hypothetical protein Csa_005521 ... [more]
XP_011656916.16.1e-2661.86sorcin isoform X1 [Cucumis sativus][more]
BLAST of CmoCh20G007160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007160.1CmoCh20G007160.1mRNA