CmoCh20G007120 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G007120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	Cmo_Chr20: 3505632 .. 3506806 (-)
RNA-Seq Expression	CmoCh20G007120
Synteny	CmoCh20G007120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGGCTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGACTCTCACTTGAAAACTATGATTTTTTTTTTTAATTATCGGACCATATAATCTTCCTCTCAAACAAAGAATTGTTCGTTGGTAGGCTAAAGTGCCCAAGTGATTGATCTAACGGATTAAATAAAAGGTTGAAAGCTTCCATTCGAAGTAAGGTAAGAAGGGTCGATCGGTCAAAGACAGAGGCATAGTACCCGTTCCATCTCTAATCTTTAACAGGGCGTAACTTGTTGAAGCATGATACATGCAAAGAACGTACACCACAATTTTGAAAAAAAAAAATCCCAAGTAAAATTAGCTTGTTGCCGTTTGCTATGTGTTCTGACAGTTGCAGATGAAGCTGGAAAAGTAGGCGGCTATGGTAGTTTGTGCTTCTTTGTCGACTATGATTAGCGGACGCTGAGGGGCGGGCACAACAACTACATAGACCCCTTCCTTTCTGTTGTTCCGACTTACTAGTTGGTGCATCTTTGTCAGCTATGATCAGTGGAGGTCGAGGGAGCAAGCACAGTAGCTACATGGACGCCTTCCTTTCTTTTGTTGCGCTCCAGGAAATGAGATCCCGACCGAGAAGAAAAACCCGACTCTACATCAAATCAAATACATGTCCATTTGAATAGCATCTAAAACTTTCAAATAATCAATCTTCATTACACTGTGCAATTGTTCAATCGTTAAATAAATCTCATCAGCTCTTGGATTGAACTCATCTCCAGCAACAAATCTCCAACTCTGTGAGTTAATATGCACCAAACTGTATCCAGCAACAACCTTGACTCCTCTCTCTTTTGCCAACCTCCTCATCTTTGCAGAATCACTCATTAGCCCGCAGTTCGCATACAAGTTCGACGCAAGCATGTAGCCAGTCGAGTTCAACGGTTCGAGTTCAAGAACACGAGAGGCCGCTCCCGAGCCAAGCATAATGTTTCCATAGCTCCTACAAGAGCTCAATAG

mRNA sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGGCTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACTTCGCATACAAGTTCGACGCAAGCATGTAGCCAGTCGAGTTCAACGGTTCGAGTTCAAGAACACGAGAGGCCGCTCCCGAGCCAAGCATAATGTTTCCATAGCTCCTACAAGAGCTCAATAG

Coding sequence (CDS)

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGGCTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACTTCGCATACAAGTTCGACGCAAGCATGTAGCCAGTCGAGTTCAACGGTTCGAGTTCAAGAACACGAGAGGCCGCTCCCGAGCCAAGCATAATGTTTCCATAGCTCCTACAAGAGCTCAATAG

Protein sequence

MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRIQVRRKHVASRVQRFEFKNTRGRSRAKHNVSIAPTRAQ

Homology

[Close]

BLAST of CmoCh20G007120 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-36
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy Swiss-Prot
Match: Q0ZIV5 (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-36
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy Swiss-Prot
Match: Q06R67 (50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-36
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFT+KS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTEKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy Swiss-Prot
Match: Q0PUX7 (50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa OX=3747 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.2e-36
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGP MGHTMHYR  I
Sbjct: 61 RMGPTMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy Swiss-Prot
Match: Q09FP7 (50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.2e-36
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy TrEMBL
Match: A0A2H4T1X4 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy TrEMBL
Match: A0A344AXT7 (50S ribosomal protein L23, chloroplastic OS=Cucurbita pepo OX=3663 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy TrEMBL
Match: A0A0S2IFZ5 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy TrEMBL
Match: A0A0S2IEI3 (50S ribosomal protein L23, chloroplastic OS=Cucurbita argyrosperma OX=34294 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. ExPASy TrEMBL
Match: A0A0S2IGM7 (50S ribosomal protein L23, chloroplastic OS=Cucurbita pepo var. texana OX=37651 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. NCBI nr
Match: YP_009447493.1 (ribosomal protein L23 [Cucurbita maxima] >YP_009447513.1 ribosomal protein L23 [Cucurbita maxima] >YP_009447578.1 ribosomal protein L23 [Cucurbita moschata] >YP_009447599.1 ribosomal protein L23 [Cucurbita moschata] >YP_009505122.1 ribosomal protein L23 [Cucurbita pepo] >YP_009505142.1 ribosomal protein L23 [Cucurbita pepo] >ALO21711.1 ribosomal protein L23 [Cucurbita argyrosperma] >ALO21798.1 ribosomal protein L23 [Cucurbita argyrosperma var. palmeri] >ALO21888.1 ribosomal protein L23 [Cucurbita argyrosperma subsp. sororia] >ALO22037.1 ribosomal protein L23 [Cucurbita ecuadorensis] >ALO22121.1 ribosomal protein L23 [Cucurbita ficifolia] >ALO22185.1 ribosomal protein L23 [Cucurbita foetidissima] >ALO22267.1 ribosomal protein L23 [Cucurbita lundelliana] >ALO22323.1 ribosomal protein L23 [Cucurbita maxima subsp. andreana] >ALO22426.1 ribosomal protein L23 [Cucurbita okeechobeensis] >ALO22499.1 ribosomal protein L23 [Cucurbita okeechobeensis subsp. martinezii] >ALO22575.1 ribosomal protein L23 [Cucurbita pepo subsp. fraterna] >ALO22665.1 ribosomal protein L23 [Cucurbita pepo subsp. ovifera] >ALO22711.1 ribosomal protein L23 [Cucurbita pepo var. ozarkana] >ALO22764.1 ribosomal protein L23 [Cucurbita pepo subsp. pepo] >ALO22820.1 ribosomal protein L23 [Cucurbita pepo var. texana] >ALO22874.1 ribosomal protein L23 [Cucurbita pedatifolia])

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-34
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. NCBI nr
Match: QBS50132.1 (ribosomal protein L23 [Syringa pubescens subsp. microphylla] >QBS50133.1 ribosomal protein L23 [Syringa pubescens subsp. microphylla] >QSQ71732.1 ribosomal protein L23 [Syringa pubescens subsp. microphylla] >QSQ71755.1 ribosomal protein L23 [Syringa pubescens subsp. microphylla])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSVRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. NCBI nr
Match: YP_009707931.1 (ribosomal protein L23 [Begonia pulchrifolia] >YP_009707953.1 ribosomal protein L23 [Begonia pulchrifolia] >YP_009733685.1 ribosomal protein L23 [Begonia guangxiensis] >YP_009733704.1 ribosomal protein L23 [Begonia guangxiensis] >YP_009775176.1 ribosomal protein L23 [Begonia versicolor] >YP_009775195.1 ribosomal protein L23 [Begonia versicolor] >YP_010117494.1 ribosomal protein L23 [Begonia coptidifolia] >YP_010117557.1 ribosomal protein L23 [Begonia coptidifolia] >QEU52793.1 ribosomal protein L23 [Begonia pulchrifolia] >QEU52794.1 ribosomal protein L23 [Begonia pulchrifolia] >QHV34433.1 ribosomal protein L23 [Begonia guangxiensis] >QHV34454.1 ribosomal protein L23 [Begonia guangxiensis] >QJA15232.1 ribosomal protein L23 [Begonia versicolor])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. NCBI nr
Match: WP_131792710.1 (50S ribosomal protein L23 [Candidatus Frankia datiscae])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. NCBI nr
Match: RXV70581.1 (50S ribosomal protein L23, partial [bacterium 1XD8-92])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPIMGHTMHYR  I
Sbjct: 61 RMGPIMGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-35
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPI+GHTMHYR  I
Sbjct: 61 RMGPILGHTMHYRRMI 76

[Close]

BLAST of CmoCh20G007120 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-35
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 RMGPIMGHTMHYRLRI 77
          RMGPI+GHTMHYR  I
Sbjct: 61 RMGPILGHTMHYRRMI 76

The following BLAST results are available for this feature:

BLAST of CmoCh20G007120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK6	2.1e-36	96.05	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q0ZIV5	2.1e-36	96.05	50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A P...	[more]
Q06R67	6.2e-36	94.74	50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=rpl...	[more]
Q0PUX7	8.2e-36	94.74	50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa OX=3747 GN=rpl23 P...	[more]
Q09FP7	8.2e-36	94.74	50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-...	[more]

BLAST of CmoCh20G007120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4T1X4	1.6e-34	97.37	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=rpl23 PE...	[more]
A0A344AXT7	1.6e-34	97.37	50S ribosomal protein L23, chloroplastic OS=Cucurbita pepo OX=3663 GN=rpl23 PE=3...	[more]
A0A0S2IFZ5	1.6e-34	97.37	50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=rpl23 ...	[more]
A0A0S2IEI3	1.6e-34	97.37	50S ribosomal protein L23, chloroplastic OS=Cucurbita argyrosperma OX=34294 GN=r...	[more]
A0A0S2IGM7	1.6e-34	97.37	50S ribosomal protein L23, chloroplastic OS=Cucurbita pepo var. texana OX=37651 ...	[more]

BLAST of CmoCh20G007120 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009447493.1	3.3e-34	97.37	ribosomal protein L23 [Cucurbita maxima] >YP_009447513.1 ribosomal protein L23 [...	[more]
QBS50132.1	1.3e-33	96.05	ribosomal protein L23 [Syringa pubescens subsp. microphylla] >QBS50133.1 ribosom...	[more]
YP_009707931.1	1.6e-33	96.05	ribosomal protein L23 [Begonia pulchrifolia] >YP_009707953.1 ribosomal protein L...	[more]
WP_131792710.1	1.6e-33	96.05	50S ribosomal protein L23 [Candidatus Frankia datiscae]	[more]
RXV70581.1	1.6e-33	96.05	50S ribosomal protein L23, partial [bacterium 1XD8-92]	[more]

BLAST of CmoCh20G007120 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	4.2e-35	90.79	ribosomal protein L23.1	[more]
ATCG01300.1	4.2e-35	90.79	ribosomal protein L23	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..84 e-value: 4.2E-16 score: 61.1
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 4..73 e-value: 1.3E-13 score: 51.1
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..76
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_B	Ribosomal_L23_B	coord: 1..92 score: 14.524805
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..113
None	No IPR available	PANTHER	PTHR11620:SF69	50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC	coord: 1..76
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G007120.1	CmoCh20G007120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome