CmoCh20G006680 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G006680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 3257692 .. 3258158 (+)
RNA-Seq Expression	CmoCh20G006680
Synteny	CmoCh20G006680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCTCGTACTTCCATCCCACCCTTTCTTCCTCTGCTTCAATATCATGTAACTCTGTTTTATCTGTGTTCATAAATTTTTATAGGATTATCATAATTATACATTTCAGCTTCTTTTACATATGTTTGTGTGTGATCTTTTGAAAATTTGGGGACAAATTCGAATTGGGTCATTGTTCATTTCTTATTTCCTGGCTCCGATGGGGTTGTTTTGCTGATATTGCAGGTTGTACCACCGGAGTCAGCTCTGTTTAAGTAGAAACCAAGGAAGTAGTTCTTGAAGAAGAGCCAAAGGAAGAAGCTGCTGAAGAATAGGCGGCTGAAGTGGCAGCTGAGCTTGTGGTGGAAGAGGAGACCAAACCAGCAGAGGCTGAGCCACCGGCGGTGGAGGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAGGAGAAGCCAGAAGAAGAATCTGCAGCTGAGAAGGCCGAGTAA

mRNA sequence

ATGCTTCCTCGTACTTCCATCCCACCCTTTCTTCCTCTGCTTCAATATCATCTTCTTTTACATATGTTGTACCACCGGAGTCAGCTCTGTTTAACTGAGCTTGTGGTGGAAGAGGAGACCAAACCAGCAGAGGCTGAGCCACCGGCGGTGGAGGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAGGAGAAGCCAGAAGAAGAATCTGCAGCTGAGAAGGCCGAGTAA

Coding sequence (CDS)

ATGCTTCCTCGTACTTCCATCCCACCCTTTCTTCCTCTGCTTCAATATCATCTTCTTTTACATATGTTGTACCACCGGAGTCAGCTCTGTTTAACTGAGCTTGTGGTGGAAGAGGAGACCAAACCAGCAGAGGCTGAGCCACCGGCGGTGGAGGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAGGAGAAGCCAGAAGAAGAATCTGCAGCTGAGAAGGCCGAGTAA

Protein sequence

MLPRTSIPPFLPLLQYHLLLHMLYHRSQLCLTELVVEEETKPAEAEPPAVEVVEEKPAEEAEEKPEEESAAEKAE

Homology

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BLAST of CmoCh20G006680 vs. NCBI nr
Match: KAG6570926.1 (hypothetical protein SDJN03_29841, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MLPRTSIPPFLPLLQYHLLL-------HMLYHRSQLCLTELVVEEETKPAEAEPPAVEVV 60
          MLPRTSIPPFLPLLQYH ++             +     ELVVEEETKPAEAEPPAVEVV
Sbjct: 1  MLPRTSIPPFLPLLQYHEVVVEEEPKEEAAEEEAAEVAAELVVEEETKPAEAEPPAVEVV 60

Query: 61 EEKPAEEAEEKPEEESAAEKAE 76
          EEKPAEEAEEKPEEESAAE+AE
Sbjct: 61 EEKPAEEAEEKPEEESAAEEAE 82

The following BLAST results are available for this feature:

BLAST of CmoCh20G006680 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G006680 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G006680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570926.1	1.9e-14	71.95	hypothetical protein SDJN03_29841, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh20G006680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G006680.1	CmoCh20G006680.1	mRNA