CmoCh20G006610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G006610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	Cmo_Chr20: 3232462 .. 3233457 (+)
RNA-Seq Expression	CmoCh20G006610
Synteny	CmoCh20G006610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACCCTTCACACTCAAAGTAGGGTTTTAGCTTTAACCCTCTGCAGCCAAGAAGCCAGAGTCGAGTTCTTGTTGTTGATAGTCTGTACTAAGAACGGACTTTCAGAATCTATCATTTCTTCAGATTAACAATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGCGTTGCTTAATGCTTTTGCGTCCATTTGAAGTGCCAAAGATTCTGTATCTAGAGATCTTGGAGTTTCTTTTCTCCAAAAGGAGTCAACGAAAACGGTGTTCCATCTTCAAATTTATTTCTCTCAGTTTTTTAGTTGCGATACTAAGCTCTAGAACTTTGAAATGACAACAAGATAGCCTTTCTCCTTTACCTTGTTTTTAAACAACGAGCTCGGCAAAATGCTTCAATAAATTAGGTAATGTATTTTGCCTGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCATCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCTGCTGCGGTTGGCTTCCCGAAGGTGCGTAACTGATAATTGAACTCTGAAGTTTCTTGATCTGTCACGAGCTAGATCGAAAGAGGCAAGGACGCTAATATAAATTTGTATAGCTTGGAATTTAGATCATATCTACGATTTTAGCATGATTTCTTCCGTGGACAAGAAAGAAAGCTGATAATTTGCCGGAAGTTGATTTTCTATTTGCATTGGTTCTTCGTTGGATGAATCTCAGATTTATAATTATTTGCATGAATCAAGAAAGAGAGCAGTAGCTTGGGCGAGAATAATGGTCAACTATATTTATAAATAGTGATATCTATATTAAGGTTTAGGGGTCATAATCTGATGTTTCTTGA

mRNA sequence

AGAAACCCTTCACACTCAAAGTAGGGTTTTAGCTTTAACCCTCTGCAGCCAAGAAGCCAGAGTCGAGTTCTTGTTGTTGATAGTCTGTACTAAGAACGGACTTTCAGAATCTATCATTTCTTCAGATTAACAATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCATCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCTGCTGCGGTTGGCTTCCCGAAGGTGCGTAACTGATAATTGAACTCTGAAGTTTCTTGATCTGTCACGAGCTAGATCGAAAGAGGCAAGGACGCTAATATAAATTTGTATAGCTTGGAATTTAGATCATATCTACGATTTTAGCATGATTTCTTCCGTGGACAAGAAAGAAAGCTGATAATTTGCCGGAAGTTGATTTTCTATTTGCATTGGTTCTTCGTTGGATGAATCTCAGATTTATAATTATTTGCATGAATCAAGAAAGAGAGCAGTAGCTTGGGCGAGAATAATGGTCAACTATATTTATAAATAGTGATATCTATATTAAGGTTTAGGGGTCATAATCTGATGTTTCTTGA

Coding sequence (CDS)

ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCATCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCTGCTGCGGTTGGCTTCCCGAAGGTGCGTAA

Protein sequence

MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPFHSASSSALMTSMLSVSRSCCGWLPEGA

Homology

[Close]

BLAST of CmoCh20G006610 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 5  GARSVFRSFSGSARRAAAQIGSQAKSSSSTP--FRMATTKPLSHRTFRCAAEMSFCLESM 64
          GARS+ R  + S+R AAA  G  A  + S P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSVSRSCCGWLPE 91
          +P+HSA++SALMTS LS+S    GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of CmoCh20G006610 vs. ExPASy TrEMBL
Match: A0A6J1FX39 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRSCCGWLPEG+
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGS 92

[Close]

BLAST of CmoCh20G006610 vs. ExPASy TrEMBL
Match: A0A6J1FS03 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          SMMPFHSASSSALMTSMLSVSRSCCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 91

[Close]

BLAST of CmoCh20G006610 vs. ExPASy TrEMBL
Match: A0A6J1FTB0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPE 91
          SMMPFHSASSSALMTSMLSVSRSCCGWLPE
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPE 90

[Close]

BLAST of CmoCh20G006610 vs. ExPASy TrEMBL
Match: A0A6J1JFZ5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAK SSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRS CGWLPEG+
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGS 92

[Close]

BLAST of CmoCh20G006610 vs. ExPASy TrEMBL
Match: A0A6J1J7G1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAK SSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          SMMPFHSASSSALMTSMLSVSRS CGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 91

[Close]

BLAST of CmoCh20G006610 vs. NCBI nr
Match: XP_022943543.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022943544.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRSCCGWLPEG+
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGS 92

[Close]

BLAST of CmoCh20G006610 vs. NCBI nr
Match: XP_022943541.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          SMMPFHSASSSALMTSMLSVSRSCCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 91

[Close]

BLAST of CmoCh20G006610 vs. NCBI nr
Match: XP_022943542.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 3.1e-38
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPE 91
          SMMPFHSASSSALMTSMLSVSRSCCGWLPE
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPE 90

[Close]

BLAST of CmoCh20G006610 vs. NCBI nr
Match: KAG7010763.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRS CGWLPEGA
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGA 92

[Close]

BLAST of CmoCh20G006610 vs. NCBI nr
Match: XP_023512420.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRNFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          SMMPFHSASSSALMTSMLSVSRS CGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 91

[Close]

BLAST of CmoCh20G006610 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAAAQIGSQAK---SSSSTPFRMATTKPLSHRTFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  K   SS+ T FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          +P+H+A++SAL+ SMLSVSR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of CmoCh20G006610 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAAAQIGSQAK---SSSSTPFRMATTKPLSHRTFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  K   SS+ T FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          +P+H+A++SAL+ SMLSVSR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of CmoCh20G006610 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAAAQIGSQAK---SSSSTPFRMATTKPLSHRTFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  K   SS+ T FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSVSRSCCGWLPEG 92
          +P+H+A++SAL+ SMLSVSR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of CmoCh20G006610 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAAAQIGSQAK---SSSSTPFRMATTKPLSHRTFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  K   SS+ T FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSVSRSCCGWL 89
          +P+H+A++SAL+ SMLSVSR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]

BLAST of CmoCh20G006610 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAAAQIGSQAK---SSSSTPFRMATTKPLSHRTFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  K   SS+ T FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSVSRSCCGWL 89
          +P+H+A++SAL+ SMLSVSR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:

BLAST of CmoCh20G006610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	1.0e-07	44.32	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmoCh20G006610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX39	3.0e-39	98.91	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A6J1FS03	3.0e-39	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1FTB0	1.5e-38	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1JFZ5	2.1e-37	96.74	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A6J1J7G1	2.1e-37	97.80	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of CmoCh20G006610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943543.1	6.2e-39	98.91	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
XP_022943541.1	6.2e-39	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022943542.1	3.1e-38	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
KAG7010763.1	4.0e-38	98.91	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb...	[more]
XP_023512420.1	3.4e-37	97.80	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of CmoCh20G006610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28395.2	1.2e-11	47.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	1.2e-11	47.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	1.2e-11	47.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.4	7.6e-11	47.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.5	7.6e-11	47.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G006610.1	CmoCh20G006610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy