CmoCh20G006460 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G006460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal_L30 domain-containing protein
LocationCmo_Chr20: 3166072 .. 3168596 (+)
RNA-Seq ExpressionCmoCh20G006460
SyntenyCmoCh20G006460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGGAAAGAAAAAAAAAAATTAGATATCCGACGCCGTTTCTCAACTCTCTCTTTCCCTCGATATTTTAGTTTCGTCTCTCAAACTCAAGCTTGAGACTTAACATCGGCAGCTATCAGTCGCTTCCCTTGATTCCTCTCCTTTCTTCTCCTCGAACTGGTAATATTGGATTCTCCACTTTCTTGATTTATGCTTTCTTCCCGCCTAATCTTCTGTTCTTGTTTTTTCTGCTATCTACTTTACTTGGGGCGGTTAATTTTCATTCTGTATTAGGAAAAATTGATTGTCTTTGTACTAGTTGGTTTATTAGAATGCTATTTAGTTTGAGCTCATTAAGAATGATGGGTTTCCATACTATTCTCAGGATATATCTTTAATTCCCCCCCTCCCCCCTCACTTTTCGTCTGTTTTTCAGACTTTCAGTGGCCTTTCATGATGTGGAGATTCCAGTTTCGTGATAATAATGTGTATTGCTGTTCTTTAGAATGTGAAAATATTTAGTAAATCAAAATTTGGTATCTGTAATGGGTGGCTGCAAAATTGATGCTTCGAATGTCCTGTCTGTTTTTTTTTTTTTTTGGTTTATGAATGTTTTCGTTTGAATATTACGTTATTCCTGAACGAGGATTTAATTCAATGCTGGGAATGAGATATAATGAAAGTGATATGAAAATCGTAATGAATTGGAATTAGAGACGGATTGCCTTAAGGATTGAGTTAGAAACGATTCTATTTTAACCCTAAGGATTGAGCTAGAAACGGATTGCCTAACGATCTTACTCTTGAGATAAAGAACAAGTTCCTTGGCTGAAGAATTGAACACTCCACTAGATAGGATGATAAATCCTACTTGAATGTTCTTGTTATGCAACTCGACGCATGAATTGCAAAATTCATGAAGTTCTCTTGTTGGCTAAACTTGAAAGAAGCACAAAGGTTAAAACTCGATTCATCATTATCTGTTTTGTACAACCTAGTCGACAGGCCTTAGATTACATCCCAGAACCCTGAATACATGCCACATTATAGAACATAGAAAGTGACTAAGAATAACCCTACTTAATATGTCATAAAAGGATAAAATTACATCAAAGTTATTGGATGAAGTATGAATAATAATTTGATGTCCTTGGTGATTCATATCAGAAAGTTCTTAATCAAACCAAATTGAATTTGTAAAACTGGTTTTAAACTGACAAAGAGTTTGGTTTAGTTAGCACATTTGGCAAGCTGATCATCATGGTTTTCAGTTTGTGGCTTTTTTGAACCATGCACGTCCCAGCATTAGTTCTATCACAATGCTATCAAGCTTACAGATCTCCTCCTTATCCGTTCTGCATTGGAAGTTTTTTGCTTCTTAGCATGCGCTTTCACCTTTTTTTAATGTTCCTTTTAAGACTGAATGCTGTGTCTATGAAAAATCTTATGTAAATTTCAAGGTCTAGATTGATGAAAATGATGTAGTTGAATGCTATATTGAAATGGTTTTGCTTCCAAGCATGCAGTTCTACCGTTTTAATTTTTTTAAATATTGTAGAAGACTTTATTGAAAGCTTCAGGTGGATATAAAGATGAATATATCTATTTGAGATGACGAATCATGGCGTGGATGTGGTTTCTACTTTAAGTAATCATCTATTTCTTTTCATGTTATTTTGTGCAAATAGAGCATTGGTAGAGCTTTCAATCTATTGAAGATGATCTTTTGTTTAATTGAAAGTTTGTGAACTGCAGAAGTTTTCCCGCCCAACAAATTAGAAGATTTTGTTGAGGTGCTTAGCTGAGATTGTTGATATGCTCGCAGAGAAATCTATTTCTTGATCATTTTTTTGTTTTGTAGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTTGCTTTTTATACTTATTCTCTACTGCGCACATGCACACACTACAGAACAACCTCATGGTGACTGAATGCCATGATCCCTTTTTCGTTGTTTTGCTTAATTTTATTATAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGCGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGAAACATGCATTGCTGTTAGATATCAGGTCTACTTCTCATTTATCGGGACGATGTGAGAAGGATTATATTTGAGCAGTGTACTTTTCTGGAATTATTTGATAATCAAGGCTTTTATACTCTATACATCTTGCTGAGTCTAGTTGCTAGCTAAAATAATTTATTGGAATAGATGCCTGTTTGAAAATGATGCCTATCAAAATCATTTGAGGATTCTACTTCCAGTAAGAAG

mRNA sequence

TTTTGGAAAGAAAAAAAAAAATTAGATATCCGACGCCGTTTCTCAACTCTCTCTTTCCCTCGATATTTTAGTTTCGTCTCTCAAACTCAAGCTTGAGACTTAACATCGGCAGCTATCAGTCGCTTCCCTTGATTCCTCTCCTTTCTTCTCCTCGAACTGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGCGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGAAACATGCATTGCTGTTAGATATCAGGTCTACTTCTCATTTATCGGGACGATGTGAGAAGGATTATATTTGAGCAGTGTACTTTTCTGGAATTATTTGATAATCAAGGCTTTTATACTCTATACATCTTGCTGAGTCTAGTTGCTAGCTAAAATAATTTATTGGAATAGATGCCTGTTTGAAAATGATGCCTATCAAAATCATTTGAGGATTCTACTTCCAGTAAGAAG

Coding sequence (CDS)

ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGCGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGA

Protein sequence

MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS
Homology
[Close]
BLAST of CmoCh20G006460 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]
BLAST of CmoCh20G006460 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]
BLAST of CmoCh20G006460 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Sbjct: 3  LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]
BLAST of CmoCh20G006460 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]
BLAST of CmoCh20G006460 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Sbjct: 2  SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]
BLAST of CmoCh20G006460 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. ExPASy TrEMBL
Match: A0A6J1JDZ2 (uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH AL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 2.2e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 6.3e-51
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLPSPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. NCBI nr
Match: XP_022986405.1 (uncharacterized protein LOC111484152 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH AL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 108

[Close]
BLAST of CmoCh20G006460 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-33
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 109
           M+ QVKR+VVVETEEMY ARK+    H ALRPPLVV+H  SP++ S++
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSH-SSPATDSSN 107

The following BLAST results are available for this feature:
BLAST of CmoCh20G006460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8FS511.6e-0448.1550S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31... [more]
Q8NSX31.6e-0446.3050S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM... [more]
C3PL272.1e-0442.5950S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D... [more]
A4QBL52.7e-0446.3050S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=... [more]
A8ZV752.7e-0443.8650S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390... [more]
BLAST of CmoCh20G006460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FUA41.1e-51100.00uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A1S3C2141.4e-4892.5950S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1[more]
A0A5A7VAZ61.4e-4892.5950S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1JDZ21.9e-4894.44uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152... [more]
A0A0A0LN295.4e-4892.59Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160... [more]
BLAST of CmoCh20G006460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944386.12.2e-51100.00uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet... [more]
KAG7010749.16.3e-5199.07rpmD [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023512952.15.4e-5097.22uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo][more]
XP_008455933.12.9e-4892.59PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 5... [more]
XP_022986405.13.8e-4894.44uncharacterized protein LOC111484152 [Cucurbita maxima][more]
BLAST of CmoCh20G006460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G55140.13.7e-3364.81ribosomal protein L30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005996Ribosomal protein L30, bacterial-typeTIGRFAMTIGR01308TIGR01308coord: 19..72
e-value: 4.5E-19
score: 65.9
IPR005996Ribosomal protein L30, bacterial-typePANTHERPTHR15892MITOCHONDRIAL RIBOSOMAL PROTEIN L30coord: 1..106
IPR005996Ribosomal protein L30, bacterial-typeHAMAPMF_01371_BRibosomal_L30_Bcoord: 16..73
score: 15.005798
IPR005996Ribosomal protein L30, bacterial-typeCDDcd01658Ribosomal_L30coord: 19..72
e-value: 4.99648E-16
score: 64.3646
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilyGENE3D3.30.1390.20coord: 17..78
e-value: 8.6E-19
score: 68.7
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilySUPERFAMILY55129Ribosomal protein L30p/L7ecoord: 18..72
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 20..69
e-value: 1.5E-16
score: 60.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..108
NoneNo IPR availablePANTHERPTHR15892:SF4RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G006460.1CmoCh20G006460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003735 structural constituent of ribosome